cluster # 5974

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Anopheles gambiae
cluster # 5974 cluster # 5974 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5974#0 length = 932 sequences # 3

consensus_5974#1 length = 650 sequences # 2

consensusID : consensus_5974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 932
fasta sequence

                              [TGGTGACCGCGGCGGGGCACGCCAATCTTACCTTTTTCCATCGCAGCACCCGCCGTCAGTTTGCTGCCGGGTTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATC-TTCATCGTTTAGTCCCGGCATTTGAAAGCACTGACCGAGCGAGAAATTGACATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCGATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAACGCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGATGCCACCGAAAAAGGATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATCTCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCATATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGGCTTCGTTATATTTTCAATTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGTGCTTTT]

[+] EMBL CNS09JLI             [TGGTGACCGCGGCGGGGCACGCCAATCTTACCTTTTTCCATCGCAGCACCCGCCGTCAGTTTGCTGCCGGGTTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATC TTCATCGTTTAGTCCCGGCATTTGAAAGCACTGACCGAGCGAGAAATTGACATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCGATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAACGCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGATGCCACCGAAAAAGGATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATCTCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCATATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGGCTTCGTTATATTTTCAATTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGTGCTTTT]
[-] EMBL CNS09JLJ             [                                                                        TTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTAGTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCGTTCATCGTTTAGTCCCGGCATTTGAAAGCACTGACCGAGCGAGAAATTGACATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCGATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAACGCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGATGCCACCGAAAAAGGATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATCTCAACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCATATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGG TTCGT                                                     ]
[+] EMBL BM622677             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              aGTGGCAAGAAGGGAGGTGGCGCTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAACAGCAGGGCAAAATAATGGAAGCCCTGCACAAGCTGAAGGAAGGCCACGCGTTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGTGGCGATCTCGGGTGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCAGCATTTGCGTTACCAATCTCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATACCATATTATAATGGT                                                                                           ]




>consensus_5974#0
TGGTGACCGCGGCGGGGCACGCCAATCTTACCTTTTTCCATCGCAGCACCCGCCGTCAGT
TTGCTGCCGGGTTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCG
TCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCG
CTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGA
TCTTCATCGTTTAGTCCCGGCATTTGAAAGCACTGACCGAGCGAGAAATTGACATTCAGT
GTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCGATGACAGC
AGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAACGCACAGGG
AACCGGCAGGACTGTTTTGGAAACAAACCCAAACGATGCCACCGAAAAAGGATGCTAAAG
GAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCGCTGAGGAAG
GTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGACACATCCTGTGCGAAA
AGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCGTTTAATGTGG
TGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGGTGGCAGATTC
GCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATCTCCACTACCA
ACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCATATTATAATGG
TGGAAGGCAAGAAGTAGGCACACCAATAAACGGCTTCGTTATATTTTCAATTCAAAAAAA
AAAAAAAAAAGGCCACATGTGCTCGTGCTTTT

consensusID : consensus_5974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [CGCACCCGCCGTCAGTTTGCTGCCGGATTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGGCCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTGTTGGCGAGAAATTCGGACATACTTTGTTGCCCTTTGGCACGGTCGTAGATCCATTGCGAGGCGTCGGTGGGCGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAGTCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTGCCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATACAGCACACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGAGGATTTCGTTCAGCATTATAGAAAAAAAATGCTGGACCGAAAACACGACGTGTTTATTTGCGG]

[-] EMBL BM657163             [CGCACCCGCCGTCAGTTTGCTGCCGGATTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGGCCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTGTTGGCGAGAAATTCGGACATACTTTGTTGCCCTTTGGCACGGTCGTAGATCCATTGCGAGGCGTCGGTGGGCGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAGTCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTGCCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATACAGCACACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGAGGATTTCGTTCAGCATTATAGAAAAAAAATGCTGGACCGAAAACACGACGTGTTTATTTGCGG]
[-] EMBL BM612713             [                                                  GCGTCTTGTTACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGATCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGGCCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTGTTGGCGAGAAATTCGGACATACTTTGTTGCCCTTTGGCACGGTCGTAGATCCATTGCGAGGCGTCGGTGGGCGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAGTCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTGCCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATACAGCACACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGAGGATTTCGTTCAGCATTATAGAAAAAAAATGCTGGACCGAAAACcgg                ]




>consensus_5974#1
CGCACCCGCCGTCAGTTTGCTGCCGGATTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTT
ACTGTTCAGTATCTCGTCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTC
CACCATCTGCCGGTCGCTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGA
CATCAACCGTGCGCGATCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCG
CCTCTTGTGTGCCGGGCCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTC
TTCGATGTCGCGATTGTTGGCGAGAAATTCGGACATACTTTGTTGCCCTTTGGCACGGTC
GTAGATCCATTGCGAGGCGTCGGTGGGCGAGATACAATCGTCCTCCACCGACTGCCCGTA
CTGATAGTCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGA
CATGGTGCCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGA
TTACATACAGCACACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGAGGATTTCGTTCAG
CATTATAGAAAAAAAATGCTGGACCGAAAACACGACGTGTTTATTTGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5974#0      TGGTGACCGCGGCGGGGCACGCCAATCTTACCTTTTTCCATCGCAGCACCCGCCGTCAGT 60
consensus_5974#1      --------------------------------------------CGCACCCGCCGTCAGT 16
                                                                   ***************

consensus_5974#0      TTGCTGCCGGGTTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCG 120
consensus_5974#1      TTGCTGCCGGATTTCGCACCCAGCGCCGCGGGTGGCGTCTTGTTACTGTTCAGTATCTCG 76
                      ********** *************************************************

consensus_5974#0      TCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGATCG 180
consensus_5974#1      TCCAGCGCCTTGCTGCATTCGTAATCGTGCTTCATGATCGCTTCCACCATCTGCCGGTCG 136
                      ******************************************************** ***

consensus_5974#0      CTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGA 240
consensus_5974#1      CTGCACGTTTCGCCGACAATATCCCGGATCTCATCCATACAGGACATCAACCGTGCGCGA 196
                      ************************************************************

consensus_5974#0      TCTTCATCGTTTAGTCCCGGCATTTGAAAGCACT---GACCGAGC-----GAGAAATTGA 292
consensus_5974#1      TCTTCATCGTTTAGTTCCGGCATTTGAAAGCACTCCGAATCGCGCCTCTTGTGTGCCGGG 256
                      *************** ******************    * ** **     * *     * 

consensus_5974#0      CATTCAGTGTTCATTCCATTCCTCAAAAAACGACTGACGTGTTGTCGAAGGACACGACCG 352
consensus_5974#1      CCTTCGCGACCCGTCTCAGCCGCCAGCTCATCGTCGTCTTCTTCTTCGATGTCGCGATTG 316
                      * ***      * *  **  *  **    *     * * * ** *   * * * ***  *

consensus_5974#0      ATGACAGCAGATTGCGTGCGTGCCGGTTGGTGGTAGATTAGAAAAGAAAACAAACCCAAC 412
consensus_5974#1      TTGGCGAGAAATT-CGGACATACT--TTGTTGCC--CTTTGGCACGGTCGTAGATCCATT 371
                       ** *   * *** **  * * *   *** **     ** *  * *     * * ***  

consensus_5974#0      GCACAGGGAACCGGCAGGACTGTTTTGGAAACAAACCCAAACGA-TGCCACCGAAAAAGG 471
consensus_5974#1      GCG--AGGCGTCGGTGGG--CGAGATACAATCGTCCTCCACCGACTGCCCGTACTGATAG 427
                      **    **   ***  **   *   *  ** *   * * * *** ****       *  *

consensus_5974#0      ATGCTAAAGGAGGAGCAAAAGCAGCCCCAGCCAAGGGTGGTGGCAAGAAGGGAGGTGGCG 531
consensus_5974#1      TCGTCATCGTCGTAATCATCGTAGACAGCGTTGCGCACATTTCGGTGGCGAGACATGGTG 487
                        *  *  *  * *   *  * ** *   *    *     *     *  * **  *** *

consensus_5974#0      CTGAGGAAGGTGCGGCGAAGGAGAAAAAGGGTGGAACTGCGGTAAAGGTACGAC-ACATC 590
consensus_5974#1      CCGCAATTTATTCTGTGTTGCTATAACGAAACTAAACTATTTTCTGTTCACGATTACATA 547
                      * *       * * * *  *    **        ****    *      ****  **** 

consensus_5974#0      CTGTGCGAAAAGCAGGGCAAAATAATGGAAGCCCTGGAGAAGCTGAAGGAAGGCCAGGCG 650
consensus_5974#1      CAGCAC---ACGTTTGCTGGGATGGTTTTTCCTGTTCAGTAGA-GGATTTCGTTCAG--- 600
                      * *  *   * *   *     **  *     *  *  ** **  * *    *  ***   

consensus_5974#0      TTTAATGTGGTGGCGACCAACTACAGCGAGGACAAGGCACGCCAGGGCGGCGATCTTGGG 710
consensus_5974#1      --CATTATAGAAAAAAAATGCTGGACCGAAAACACGACGTGTTTATTTGCGG-------- 650
                         * * * *     *    **  * ***  *** * *  *       *  *        

consensus_5974#0      TGGCAGATTCGCGGGGCCATGGTGGGACCGTTCCAGGATGCGGCATTTGCGTTACCAATC 770
consensus_5974#1      ------------------------------------------------------------
                                                                                  

consensus_5974#0      TCCACTACCAACGCGCCCAAGTACACGGATCCACCGATCAAGACCAAGTTCGGATATCAT 830
consensus_5974#1      ------------------------------------------------------------
                                                                                  

consensus_5974#0      ATTATAATGGTGGAAGGCAAGAAGTAGGCACACCAATAAACGGCTTCGTTATATTTTCAA 890
consensus_5974#1      ------------------------------------------------------------
                                                                                  

consensus_5974#0      TTCAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGTGCTTTT 932
consensus_5974#1      ------------------------------------------