cluster # 598

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Anopheles gambiae
cluster # 598 cluster # 598 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_598#0 length = 475 sequences # 1

consensus_598#1 length = 432 sequences # 1

consensusID : consensus_598#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CCGATTCATCGGTTGGAACATTGATTGTTGGACAAGTCTTGATCGCGAGAGGCAAAGGAAGATGGTAGAAGAGGTCTGGGAAAATTCATTTGTAGCAGAAGAAGTGTAGGAACAGAGTGAGGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGGAACGTTGCCGCAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGACGATTTTCTTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGAGGCGAGAAAATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGTGTCGGTGCGTTTGTAGTGTGTTGGGTACTGGTAAATGAGCAAGAGATAGATAGAGAGAGAGAGAGTGATCCTTTTTCACACACAAAGAGTATCCTTTCTTCGGTATGTTGGGAGCATCCTAGCAAGCGCAGCAG]

[+] EMBL BM620919             [CCGATTCATCGGTTGGAACATTGATTGTTGGACAAGTCTTGATCGCGAGAGGCAAAGGAAGATGGTAGAAGAGGTCTGGGAAAATTCATTTGTAGCAGAAGAAGTGTAGGAACAGAGTGAGGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGGAACGTTGCCGCAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGACGATTTTCTTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGAGGCGAGAAAATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGTGTCGGTGCGTTTGTAGTGTGTTGGGTACTGGTAAATGAGCAAGAGATAGATAGAGAGAGAGAGAGTGATCCTTTTTCACACACAAAGAGTATCCTTTCTTCGGTATGTTGGGAGCATCCTAGCAAGCGCAGCAG]




>consensus_598#0
CCGATTCATCGGTTGGAACATTGATTGTTGGACAAGTCTTGATCGCGAGAGGCAAAGGAA
GATGGTAGAAGAGGTCTGGGAAAATTCATTTGTAGCAGAAGAAGTGTAGGAACAGAGTGA
GGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGGAACGTTGC
CGCAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGACGATTTTC
TTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGAGGCGAGAA
AATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGTGTCGGTGCGTTTGTAGTGT
GTTGGGTACTGGTAAATGAGCAAGAGATAGATAGAGAGAGAGAGAGTGATCCTTTTTCAC
ACACAAAGAGTATCCTTTCTTCGGTATGTTGGGAGCATCCTAGCAAGCGCAGCAG

consensusID : consensus_598#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [ACCCACGCGTCCGATCGGTTGGAACATTGATTGTTGGACAAGTTTTGATCGCGAGAGGCAAAGGAAGATGGTAGGGGAGAGGTCTGGGAAAATTTATTTGTAGCAGAAGAAGTGTAGGAACAGAGCGAGGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGCAACGTTGCCACAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGACAATTTTCTTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGAGGCGAGAAAATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGGGTCGGTGCGTTTGTAGTGTGTTAGGCACTGGTAAATGAGTAAGAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAA]

[+] EMBL BM643296             [ACCCACGCGTCCGATCGGTTGGAACATTGATTGTTGGACAAGTTTTGATCGCGAGAGGCAAAGGAAGATGGTAGGGGAGAGGTCTGGGAAAATTTATTTGTAGCAGAAGAAGTGTAGGAACAGAGCGAGGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGCAACGTTGCCACAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGACAATTTTCTTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGAGGCGAGAAAATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGGGTCGGTGCGTTTGTAGTGTGTTAGGCACTGGTAAATGAGTAAGAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAA]




>consensus_598#1
ACCCACGCGTCCGATCGGTTGGAACATTGATTGTTGGACAAGTTTTGATCGCGAGAGGCA
AAGGAAGATGGTAGGGGAGAGGTCTGGGAAAATTTATTTGTAGCAGAAGAAGTGTAGGAA
CAGAGCGAGGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGC
AACGTTGCCACAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGA
CAATTTTCTTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGA
GGCGAGAAAATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGGGTCGGTGCGTT
TGTAGTGTGTTAGGCACTGGTAAATGAGTAAGAGATAGATAGAGAGAGAGAGAGAGAGAG
AGAGAGAGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_598#0      ------CCGATTCATCGGTTGGAACATTGATTGTTGGACAAGTCTTGATCGCGAGAGGCA 54
consensus_598#1      ACCCACGCGTCCGATCGGTTGGAACATTGATTGTTGGACAAGTTTTGATCGCGAGAGGCA 60
                            **    ****************************** ****************

consensus_598#0      AAGGAAGATGGTAGA--AGAGGTCTGGGAAAATTCATTTGTAGCAGAAGAAGTGTAGGAA 112
consensus_598#1      AAGGAAGATGGTAGGGGAGAGGTCTGGGAAAATTTATTTGTAGCAGAAGAAGTGTAGGAA 120
                     **************   ***************** *************************

consensus_598#0      CAGAGTGAGGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGG 172
consensus_598#1      CAGAGCGAGGAATTTCTACGGAGTTCAGGAAGAGATCCTTAAGGCTTAGGCTTGGTTGGC 180
                     ***** ***************************************************** 

consensus_598#0      AACGTTGCCGCAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGA 232
consensus_598#1      AACGTTGCCACAATCTTCGCTTATTCTGGGTGTTTTTGAATTAGTTTTCGTATGCGAAGA 240
                     ********* **************************************************

consensus_598#0      CGATTTTCTTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGA 292
consensus_598#1      CAATTTTCTTTCAGCAGACTATCGAACGTAGGGATGCGAAATAGCGGGGCAGCGAGGGGA 300
                     * **********************************************************

consensus_598#0      GGCGAGAAAATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGTGTCGGTGCGTT 352
consensus_598#1      GGCGAGAAAATATCCAAGAGAACCTAATACGAAGAGCACCAGTGTTCGGGTCGGTGCGTT 360
                     ************************************************ ***********

consensus_598#0      TGTAGTGTGTTGGGTACTGGTAAATGAGCAAGAGATAGATAGAGAGAGAGAGAGTGATCC 412
consensus_598#1      TGTAGTGTGTTAGGCACTGGTAAATGAGTAAGAGATAGATAGAGAGAGAGAGAGAGAG-- 418
                     *********** ** ************* ************************* **   

consensus_598#0      TTTTTCACACACAAAGAGTATCCTTTCTTCGGTATGTTGGGAGCATCCTAGCAAGCGCAG 472
consensus_598#1      --------AGAGAGAGAGTAAA-------------------------------------- 432
                             * * * ******                                        

consensus_598#0      CAG 475
consensus_598#1      ---