cluster # 5982

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5982 cluster # 5982 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5982#0 length = 715 sequences # 2

consensus_5982#1 length = 553 sequences # 2
consensus_5982#2 length = 320 sequences # 1

consensusID : consensus_5982#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence

                              [CCGGCCAGCTGAACCATTGGACACCGACCTTGGTGGCGATAGAGCGTAAGGATTGGCCGCTCGTAGATCGGTTGCTGGCAAAAGGCGCCGAGCTGTCTACCGGTCAAACAAAGCTGCACACCATGCCCGTGTCTGAATTGGAGGAATTGGTTTGTGACTGTATTGCCGAAAATTGCACAACGTTGATCGTGTGGATATTGGAAAATCGCCCCGATTACCGAATAACCCAGCAAAACGTGTACACCTTATCGGTGTACGAAGAATTCGATGTTGATCTGCTCTTTCGTCTGCTAACGTTGGCCGAGGAGCAAGGGCTGACCGGTACGAATCCGTATCGGTACATTTTCGACAATAGCGCACTGGACAATGCCGTCGAAGATGAGCGCTTCGAACTGGCCAGCTTTCTCGTGGAACGACTTCACTTTGAGGCGACGGATGCATTTAACGAACTGCGCCAACAGTATGAACAGAACCCACAGTTCAACGACTACAAACGGCTTCATAGCTTGTGCCGGGACGGAGAATTTGCCATGGTACGACAGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACATATTCATTCAAGCAGCATCCAGCGGCAATCTGGAAACTGGTACAGTACCTTTGCGAGACGCACGGTTTCCACGCCCGGATCGATGATCGCGATGAGCACGGCTTTACGGCAATGCGGCAAG]

[+] EMBL BM576234             [CCGGCCAGCTGAACCATTGGACACCGACCTTGGTGGCGATAGAGCGTAAGGATTGGCCGCTCGTAGATCGGTTGCTGGCAAAAGGCGCCGAGCTGTCTACCGGTCAAACAAAGCTGCACACCATGCCCGTGTCTGAATTGGAGGAATTGGTTTGTGACTGTATTGCCGAAAATTGCACAACGTTGATCGTGTGGATATTGGAAAATCGCCCCGATTACCGAATAACCCAGCAAAACGTGTACACCTTATCGGTGTACGAAGAATTCGATGTTGATCTGCTCTTTCGTCTGCTAACGTTGGCCGAGGAGCAAGGGCTGACCGGTACGAATCCGTATCGGTACATTTTCGACAATAGCGCACTGGACAATGCCGTCGAAGATGAGCGCTTCGAACTGGCCAGCTTTCTCGTGGAACGACTTCACTTTGAGGCGACGGATGCATTTAACGAACTGCGCCAACAGTATGAACAGAACCCACAGTTCAACGACTACAAACGGCTTCATAGCTTGTGCCGGGACGGAGAATTTGCCATGGTACGACAGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACATATTCATTCAAGCAGCATCCAGCGGCAATCTGGAAACTGGTACAGTACCTTTGCGAGACGCACGGTTTCCACG                                                ]
[+] EMBL BX602870             [                                                                                              GTCCACCGGTCAAACAAAGCTGCACACCATGCCCGTGTCTGAATTGGAGGAATTGGTTTGTGACTGTATTGCCGAAAATTGCACAACGTTGATCGTGTGGATATTGGAAAATCGCCCCGATTACCGAATAACCCAGCAAAACGTGTACACCTTATCGGTGTACGAAGAATTCGATGTTGATCTGCTCTTTCGTCTGCTAACGTTTGCCGAGGAGCAAGGGCTGACCGGTACGGATCCGTATCGGTACATTTTCGACAATAGCGCGCTGGACAATGCCGTCGAAGATGAGCGTTTCGAACTGGCCAGGTTTCTTGTGGAACGACTTCACTTTGATGCGACGGATGTATTTAACGAACTGCGCCAACAGTATGAGCAGAACCCACAGTTCAACGACTACAAACGGCTGCATAGCTTGTGCAGGGACGGAGAATTTGCCATGGTACGACAGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACATATTCATTCAAGCAGCATCCAGCGGCAATCTGG AACTGGTACAGTACCTTTGCGAGACGCACGGTTTCCTCGCCCGGATCGATGATCGCGATGAGCACGGCTTTACGGCAATGCGGCAAG]




>consensus_5982#0
CCGGCCAGCTGAACCATTGGACACCGACCTTGGTGGCGATAGAGCGTAAGGATTGGCCGC
TCGTAGATCGGTTGCTGGCAAAAGGCGCCGAGCTGTCTACCGGTCAAACAAAGCTGCACA
CCATGCCCGTGTCTGAATTGGAGGAATTGGTTTGTGACTGTATTGCCGAAAATTGCACAA
CGTTGATCGTGTGGATATTGGAAAATCGCCCCGATTACCGAATAACCCAGCAAAACGTGT
ACACCTTATCGGTGTACGAAGAATTCGATGTTGATCTGCTCTTTCGTCTGCTAACGTTGG
CCGAGGAGCAAGGGCTGACCGGTACGAATCCGTATCGGTACATTTTCGACAATAGCGCAC
TGGACAATGCCGTCGAAGATGAGCGCTTCGAACTGGCCAGCTTTCTCGTGGAACGACTTC
ACTTTGAGGCGACGGATGCATTTAACGAACTGCGCCAACAGTATGAACAGAACCCACAGT
TCAACGACTACAAACGGCTTCATAGCTTGTGCCGGGACGGAGAATTTGCCATGGTACGAC
AGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACATATTCA
TTCAAGCAGCATCCAGCGGCAATCTGGAAACTGGTACAGTACCTTTGCGAGACGCACGGT
TTCCACGCCCGGATCGATGATCGCGATGAGCACGGCTTTACGGCAATGCGGCAAG

consensusID : consensus_5982#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 553
fasta sequence

                              [CAGAATCCGCACGATGAAACTGGTACAGTACTTTGCGCAGACGCACGGTTTCCACGCCCGGATCGATGATCGCGATGAGCACGGTTTTACGGCAATGCGGCAAGCGATGGTTCAGGACCATCAGCCGATTGTTCTTTATCTGCGCAAACATAATGCGACGGTGAATCCTTCCTGGATGCAACAATCTTCAAACGTAAGCGCAGTTGACGATAGCGAAATTGATACCGAAGATTTCCTTGCGCTGATAGCATGCGATCGGGAAAGGTTAGCACGATTAAGCATCGATTATAATCGTTACGAGAGTGGTGAATTACTGCTCCATTGCTACATACGCTACGTGGACGAACCGGATGAGGATACTTTCCGGTTTCTGCTAGCCCAATACGATAACGTCGACATTCGAACGGACGCATCGTGCGAACTGCGATAGCGGAGAAACTCCGCTGCATCTGGCATATCAGAGCGGGAACAAACGGTGCCGAGAAATATTGCTCGAGTCTGGTGCCGATATCTATGCGAAATCGCTTCGGCATGGGCTTACAACGCTGCACTT]

[+] EMBL BX466128             [CAGAATCCGCACGATGAAACTGGTACAGTACTTTGCGCAGACGCACGGTTTCCACGCCCGGATCGATGATCGCGATGAGCACGGTTTTACGGCAATGCGGCAAGCGATGGTTCAGGACCATCAGCCGATTGTTCTTTATCTGCGCAAACATAATGCGACGGTGAATCCTTCCTGGATGCAACAATCTTCAAACGTAAGCGCAGTTGACGATAGCGAAATTGATACCGAAGATTTCCTTGCGCTGATAGCATGCGATCGGGAAAGGTTAGCACGATTAAGCATCGATTATAATCGTTACGAGAGTGGTGAATTACTGCTCCATTGCTACATACGCTACGTGGACGAACCGGATGAGGATACTTTCCGGTTTCTGCTAGCCCAATACGATAACGTCGACATTCGAACGGACGCATCGTGCGAACTGCGATAGCGGAGAAACTCCGCTGCATCTGGCATATCAGAGCGGGAACAAACGGTGCCGAGAAATATTGCTCGAGTCTGGTGCCGATATCTATGCGAAATCGCTTCGGCATGGGCTTACAACGCTGCACTT]
[+] EMBL BX619628             [                                                                                                                                                                                                                                          CCTTGCGCTGATAGCATGCGATCGGGAGAGGTTAGCACGATTAAGCATCGATTATAATCGTTACGAGAGTGGTGAATTACTGCTCCATTGCTACATACGCTACGTGGACGAACCGGATGAGGATNCTTTCCGGTTTCTGCTAACCCAATCCG                                                                                                                                                                       ]




>consensus_5982#1
CAGAATCCGCACGATGAAACTGGTACAGTACTTTGCGCAGACGCACGGTTTCCACGCCCG
GATCGATGATCGCGATGAGCACGGTTTTACGGCAATGCGGCAAGCGATGGTTCAGGACCA
TCAGCCGATTGTTCTTTATCTGCGCAAACATAATGCGACGGTGAATCCTTCCTGGATGCA
ACAATCTTCAAACGTAAGCGCAGTTGACGATAGCGAAATTGATACCGAAGATTTCCTTGC
GCTGATAGCATGCGATCGGGAAAGGTTAGCACGATTAAGCATCGATTATAATCGTTACGA
GAGTGGTGAATTACTGCTCCATTGCTACATACGCTACGTGGACGAACCGGATGAGGATAC
TTTCCGGTTTCTGCTAGCCCAATACGATAACGTCGACATTCGAACGGACGCATCGTGCGA
ACTGCGATAGCGGAGAAACTCCGCTGCATCTGGCATATCAGAGCGGGAACAAACGGTGCC
GAGAAATATTGCTCGAGTCTGGTGCCGATATCTATGCGAAATCGCTTCGGCATGGGCTTA
CAACGCTGCACTT

consensusID : consensus_5982#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [CAAGATGAGCGTTTCGAACTGGCCAGGTTTCTTGTGGAACGACTTCACTTTGATGCGACGGATGTATTTAACGAACTGCGCCAACAGTATGAGCAGAACCCACAGTTCAACGACTACAAACGGCTGCATAGCTTGTGCAGGGACGGAGAATTTGCCATGGTACGACAGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACTTATTCTTTTNNTAGCAGCCATCCCGCGGCNTNNTGGAACTGGTACCAGTACCCTTTTGCGAGAACGCCCGGTTCCTCCGCCCCCGGATCGATGATCGCNN]

[+] EMBL BX619952             [CAAGATGAGCGTTTCGAACTGGCCAGGTTTCTTGTGGAACGACTTCACTTTGATGCGACGGATGTATTTAACGAACTGCGCCAACAGTATGAGCAGAACCCACAGTTCAACGACTACAAACGGCTGCATAGCTTGTGCAGGGACGGAGAATTTGCCATGGTACGACAGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACTTATTCTTTTNNTAGCAGCCATCCCGCGGCNTNNTGGAACTGGTACCAGTACCCTTTTGCGAGAACGCCCGGTTCCTCCGCCCCCGGATCGATGATCGCNN]




>consensus_5982#2
CAAGATGAGCGTTTCGAACTGGCCAGGTTTCTTGTGGAACGACTTCACTTTGATGCGACG
GATGTATTTAACGAACTGCGCCAACAGTATGAGCAGAACCCACAGTTCAACGACTACAAA
CGGCTGCATAGCTTGTGCAGGGACGGAGAATTTGCCATGGTACGACAGATGATCGAAGAA
AAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACTTATTCTTTTNNTAGCAGCCA
TCCCGCGGCNTNNTGGAACTGGTACCAGTACCCTTTTGCGAGAACGCCCGGTTCCTCCGC
CCCCGGATCGATGATCGCNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5982#0      CCGGCCAGCTGAACCATTGGACACCGACCTTGGTGGCGATAGAGCGTAAGGATTGGCCGC 60
consensus_5982#2      ------------------------------------------------------------
consensus_5982#1      ------------------------------------------------------------
                                                                                  

consensus_5982#0      TCGTAGATCGGTTGCTGGCAAAAGGCGCCGAGCTGTCTACCGGTCAAACAAAGCTGCACA 120
consensus_5982#2      ------------------------------------------------------------
consensus_5982#1      ------------------------------------------------------------
                                                                                  

consensus_5982#0      CCATGCCCGTGTCTGAATTGGAGGAATTGGTTTGTGACTGTATTGCCGAAAATTGCACAA 180
consensus_5982#2      ------------------------------------------------------------
consensus_5982#1      ------------CAGAATCCGCACGATGAAACTGGTACAGTACTTTGCGCAGACGCACGG 48
                                                                                  

consensus_5982#0      CGTTGATCGTGTGGATATTGG--AAAATCGCCCCGATTACCGAATAACCCAGCAAAACGT 238
consensus_5982#2      ------------------------------------------------------------
consensus_5982#1      TTTCCACGCCCGGATCGATGATCGCGATGAGCACGGTTTTACGGCAATGCGGCAAGCGAT 108
                                                                                  

consensus_5982#0      GTACACCTTATCGGTGTACGAAGAATTCGATGTTGATCTGCTCTTTCGTCTGCTAACGTT 298
consensus_5982#2      ------------------------------------------------------------
consensus_5982#1      GGTTCAGGACCATCAGCCGATTGTTCTTTATCTGCGCAAACATAATGCGACGGTGAATCC 168
                                                                                  

consensus_5982#0      GGCCGAGGAGCAAGGGCTGACCGGTACGAATCCGTATCGGTACATTTTCGACAATAGCGC 358
consensus_5982#2      ------------------------------------------------------------
consensus_5982#1      TTCCTGGATGCAACAATCTTCAAACGTAAGCGCAGTTGACGATAGCGAAATTGATACCGA 228
                                                                                  

consensus_5982#0      ACTGGACAATGCCGTCGAAGATGAGCGCTTCGAACTGGCCAGCTTTCTCGTGGAACGACT 418
consensus_5982#2      ----------------CAAGATGAGCGTTTCGAACTGGCCAGGTTTCTTGTGGAACGACT 44
consensus_5982#1      AGATTTCCTTGC-GCTGATAGCATGCGATCGGGAAAGGTTAGCACGATTAAGCATCGATT 287
                                       *      *** *  * *  **  **     *   * * *** *

consensus_5982#0      TCACTTTGAGGCGACGGATGCATTTAACGAACTGCGCCAACAGTATGAACAGAACCCACA 478
consensus_5982#2      TCACTTTGATGCGACGGATGTATTTAACGAACTGCGCCAACAGTATGAGCAGAACCCACA 104
consensus_5982#1      ATAATC----GTTACGAGAGTGGTGAATTA-CTGCTCCATTGCTACATACGCTA--CGTG 340
                        * *     *  ***   *   * **  * **** ***    **    *   *  *   

consensus_5982#0      GTTCAACGACTACAAACGGCTTCATAGCTTGTGCCGGGACGGAGAATTTGCCATGGTACG 538
consensus_5982#2      GTTCAACGACTACAAACGGCTGCATAGCTTGTGCAGGGACGGAGAATTTGCCATGGTACG 164
consensus_5982#1      GACGAACCGGATGAGGATACTTTCCGGTTTCTGCTAGCCCAATACGATAACGTCGACATT 400
                      *   ***      *     **     * ** ***  *  *       *  *   *  *  

consensus_5982#0      ACAGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACATATT 598
consensus_5982#2      ACAGATGATCGAAGAAAAATGTCTCGATGCACAGCAAGAGTACGATGGTAGCAACTTATT 224
consensus_5982#1      CGAACGGACGCATCGTGCGAACTGCGATA-GCGGAGAAACTCCGCTGCATCTGGCATATC 459
                        *   **   *            ****   * *  * * * ** **       * *** 

consensus_5982#0      CATTCAA--GCAG-C-ATCCAGCGGCAATCTG---GAAACTGGTAC-AGTACC--TTTGC 648
consensus_5982#2      CTTTTNNTAGCAG-CCATCCCGCGGCNTNNTG---GAA-CTGGTACCAGTACCCTTTTGC 279
consensus_5982#1      AGAGCGGGAACAAACGGTGCCGAGAAATATTGCTCGAGTCTGGTGCCGATATC--TATGC 517
                                **  *  * * * *      **   **  ***** *   ** *  * ***

consensus_5982#0      GAGA-CGCACGGTT--TCCACGCCCGGATCGATGATCGCGATGAGCACGGCTTTACGGCA 705
consensus_5982#2      GAGAACGCCCGGTTCCTCCGCCCCCGGATCGATGATCGCNN------------------- 320
consensus_5982#1      GAAATCGCTTCGGC---ATGGGCTTACAACGCTGCACTT--------------------- 553
                      ** * ***   *          *    * ** **  *                       

consensus_5982#0      ATGCGGCAAG 715
consensus_5982#2      ----------
consensus_5982#1      ----------