cluster # 5983

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Anopheles gambiae
cluster # 5983 cluster # 5983 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5983#0 length = 955 sequences # 4

consensus_5983#1 length = 469 sequences # 1

consensusID : consensus_5983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 955
fasta sequence

                              [TACGCACGAGAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGGTCGACTGGCCTCGGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCGCTGCGAGGGCCTTCAGCTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTACCTGCGGAAAAGATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAGCCGTATGTTGTGGAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAATGCGCTCTGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCGAGTGTGCGTTCCGATCGCCCTGCGTCAGCTGTGCCCTGCGTCAGCTGTGCCTGCG-CCAGACCGAAAGTACTGTACGGTCGATCGCGTTGCTCATGAAGTCGGCTGGAAGTACCGAGACGTCGTGAACAACCTGGAAGCCAAGCGCAAGATCAAGGCTCGCATTGCTTACATGCACAAGAAGAAGCTGAAGAAAATCACATGGAGTGCTCGTGCCGTTGTGGCCAAGAGGATTGAGTCGCAGAATGCTGTATTGAAGCAGTATGGTTATCTCACATCGGAATTCGAGAAGAAGTACAGCAAACCAGTGGTGAACGCCGTTCCGCCGAAGCTTGGCAAGCGCAAGGCAAAGGAGCTATACGTTGCCGCCAAGGCCGCCCGTAAGGAAGCGAAATACGCAGCCAGGGCTGCAGCCAAGGCGAAAAAGGCAACCACGGCCACCAAGGCTCCGGCAAAGGCGAAGGCAAAGGCTTAATCTTATTAAATCGGAAGAAGTTTTGCCTTGACGGGGGAAAAATTTGGTGTGGTGATGGTGTTTGATGAAGAGCTTCAATTTCAACATCAATGGTTCTTAAAGATGCTATGGGGCAAGGCTGCGTTGCACAAGATT]

[+] EMBL CNS094QV             [TACGCACGAGAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGGTCGACTGGCCTCGGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCGCTGCGAGGGCCTTCAGCTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTACCTGCGGAAAAGATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAGCCGTATGTTGTGGAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAATGCGCTCTGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCGAGTGTGCGTTCCGATCGCCCTGCGTCAGCTGTGCCCTGCGTCAGCTGTGCCTGCG CCAGACCGAAAGTACTGTACGGTCGATCGCGTTGCTCATGAAGTCGGCTGGAAGTACCGAGACGTCGTGAACAACCTGGAAGCCAAGCGCAAGATCAAGGCTCGCATTGCTTACATGCACAAGAAGAAGCTGAAGAAAATCACATGGAGTGCTCGTGCCGTTGTGGCCAAGAGGATTGAGTCGCAGAATGCTGTATTGAAGCAGTATGGTTATCTCACATCGGAATTCGAGAAGAAGTACAGCAAACCAGTGGTGAACGCCGTTCCGCCGAAGCTTGGCAAGCGCAAGGCAAAGGAGCTATACGTTGCCGCCAAGGCCGCCCGTAAGGAAGCGAAATACGCAGCCAGGGCTGCAGCCAAGGCGAAAAAGGCAACCACGGCCACCAAGGCTCCGGCAAAGGCGAAGGCAAAGGCTTAATCTTATTAAATCGGAAGAAGTTTTGCCTTGACGGGGGAAAAATTTGGTGTGGTGATGGTGTTTGATGAAGAGCTTCAATTTCAACATCAATGGTTCTTAAAGATGCTAT                          ]
[-] EMBL CNS094QW             [                                                                                                                                                                                                                                                       ATCCTTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAATGCGCTCTGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCGAGTGTGCGTTCCGATCGCCCTGCTTCAGCTTTGCCCTGCTTCAGCTGTGCCTGCGCCCAGACCGAAAGTACTGTACGGTCGATCGCGTTGCTCATGAAGTCGGCTGGAAGTACCGAGACGTCGTGAACAACCTGGAAGCCAAGCGCAAGATCAAGGCTCGCATTGCTTACATGCACAAGAAGAAGCTGAAGAAAATCACATGGAGTGCTCGTGCCGTTGTGGCCAAGAGGATTGAGTCGCAGAATGCTGTATTGAAGCAGTATGGTTTTCTCACATCGGAATTCGAGAAGAAGTACAG                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS09J31             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCCGTAAGGAAGCAAAATACGCAGCCAGGGCTGCAGCCAAGGCGAAAAAGGCAACCACGGCCACCAAGGCTCCGGCAAAGGCGAAGGCAAAGGCTTAATCTTATTAAATCGGAAGAAGTTTTGCCTTGACGGGGAACAAATTTGGTGTGGTGATGGTGTTTGATGAAGAGCTTCAATTTCAACATCAATGGTTCTTAAAGATCGTGGGGGGCAAGGCTGCGTTGCACAAGATT]
[-] EMBL CNS08VIF             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGCGAAGGCAAAGGCTTAATCTTATTAAATCGGAAGAAGTTTTGAATTGAAGGGGGAAAAATTTGGTGTGGTGATGGTGTTTGATGAAGAGat                                                             ]




>consensus_5983#0
TACGCACGAGAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGGTCGACTGGCCTC
GGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCGCTGCGAGGGCCT
TCAGCTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTACCTGCGGAAAAG
ATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAGCCGTATGTTGTG
GAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAATGCGCTCTGTCG
CTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCGAGTGTGCGTTCC
GATCGCCCTGCGTCAGCTGTGCCCTGCGTCAGCTGTGCCTGCGCCAGACCGAAAGTACTG
TACGGTCGATCGCGTTGCTCATGAAGTCGGCTGGAAGTACCGAGACGTCGTGAACAACCT
GGAAGCCAAGCGCAAGATCAAGGCTCGCATTGCTTACATGCACAAGAAGAAGCTGAAGAA
AATCACATGGAGTGCTCGTGCCGTTGTGGCCAAGAGGATTGAGTCGCAGAATGCTGTATT
GAAGCAGTATGGTTATCTCACATCGGAATTCGAGAAGAAGTACAGCAAACCAGTGGTGAA
CGCCGTTCCGCCGAAGCTTGGCAAGCGCAAGGCAAAGGAGCTATACGTTGCCGCCAAGGC
CGCCCGTAAGGAAGCGAAATACGCAGCCAGGGCTGCAGCCAAGGCGAAAAAGGCAACCAC
GGCCACCAAGGCTCCGGCAAAGGCGAAGGCAAAGGCTTAATCTTATTAAATCGGAAGAAG
TTTTGCCTTGACGGGGGAAAAATTTGGTGTGGTGATGGTGTTTGATGAAGAGCTTCAATT
TCAACATCAATGGTTCTTAAAGATGCTATGGGGCAAGGCTGCGTTGCACAAGATT

consensusID : consensus_5983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [ACCCACGCGTCCGCTAGTCTAGATCGGAGCGGCGCCCTTTTTTTTTTTGTTGGTGTTTGCGAAAGTGATGGTACGCACGAAGAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGGTCGACTGGCCTCGGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCGCTGCGAGGGCCTTCAACTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTACCTGCGGAAAAGATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAGCCGTATGTTGTGGAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAATGCGCTCCGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCGAGTGTGCGTTCCGATCGCCCTGCGTCAGCTGTGCCTGCGCCCAGACCGA]

[+] EMBL BM626791             [ACCCACGCGTCCGCTAGTCTAGATCGGAGCGGCGCCCTTTTTTTTTTTGTTGGTGTTTGCGAAAGTGATGGTACGCACGAAGAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGGTCGACTGGCCTCGGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCGCTGCGAGGGCCTTCAACTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTACCTGCGGAAAAGATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAGCCGTATGTTGTGGAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAATGCGCTCCGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCGAGTGTGCGTTCCGATCGCCCTGCGTCAGCTGTGCCTGCGCCCAGACCGA]




>consensus_5983#1
ACCCACGCGTCCGCTAGTCTAGATCGGAGCGGCGCCCTTTTTTTTTTTGTTGGTGTTTGC
GAAAGTGATGGTACGCACGAAGAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGG
TCGACTGGCCTCGGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCG
CTGCGAGGGCCTTCAACTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTA
CCTGCGGAAAAGATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAG
CCGTATGTTGTGGAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAA
TGCGCTCCGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCG
AGTGTGCGTTCCGATCGCCCTGCGTCAGCTGTGCCTGCGCCCAGACCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5983#0      ------------------------------------------------------------
consensus_5983#1      ACCCACGCGTCCGCTAGTCTAGATCGGAGCGGCGCCCTTTTTTTTTTTGTTGGTGTTTGC 60
                                                                                  

consensus_5983#0      -----------TACGCACGA-GAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGG 48
consensus_5983#1      GAAAGTGATGGTACGCACGAAGAAGCCAATTTTAATTGACGGACGTGGACACTTGCTTGG 120
                                 ********* ***************************************

consensus_5983#0      TCGACTGGCCTCGGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCG 108
consensus_5983#1      TCGACTGGCCTCGGTCGTCGCCAAGCAGATCCTGTCTGGTAACTCGGTGGTCGTGGTGCG 180
                      ************************************************************

consensus_5983#0      CTGCGAGGGCCTTCAGCTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTA 168
consensus_5983#1      CTGCGAGGGCCTTCAACTGTCGGGCCATTTCTTCCGCAACAAGATCAAGTTCTTGGCCTA 240
                      *************** ********************************************

consensus_5983#0      CCTGCGGAAAAGATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAG 228
consensus_5983#1      CCTGCGGAAAAGATGTAACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGAG 300
                      ************************************************************

consensus_5983#0      CCGTATGTTGTGGAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAA 288
consensus_5983#1      CCGTATGTTGTGGAAGGCCATCCGTGGAATGGTCCCCCACAAGACCAAGCGCGGTGCGAA 360
                      ************************************************************

consensus_5983#0      TGCGCTCTGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCG 348
consensus_5983#1      TGCGCTCCGTCGCTTGAAGGTGTATGAGGGCATTCCTCCGCCATATGACAAGATGAAGCG 420
                      ******* ****************************************************

consensus_5983#0      AGTGTGCGTTCCGATCGCCCTGCGTCAGCTGTGCCCTGCGTCAGCTGTGCCTGCGCCAGA 408
consensus_5983#1      AGTGTGCGTTCCGATCGCCCTGCGTCAGCTGTGCC-TGCGCCCAGACCGA---------- 469
                      *********************************** **** *      *           

consensus_5983#0      CCGAAAGTACTGTACGGTCGATCGCGTTGCTCATGAAGTCGGCTGGAAGTACCGAGACGT 468
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      CGTGAACAACCTGGAAGCCAAGCGCAAGATCAAGGCTCGCATTGCTTACATGCACAAGAA 528
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      GAAGCTGAAGAAAATCACATGGAGTGCTCGTGCCGTTGTGGCCAAGAGGATTGAGTCGCA 588
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      GAATGCTGTATTGAAGCAGTATGGTTATCTCACATCGGAATTCGAGAAGAAGTACAGCAA 648
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      ACCAGTGGTGAACGCCGTTCCGCCGAAGCTTGGCAAGCGCAAGGCAAAGGAGCTATACGT 708
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      TGCCGCCAAGGCCGCCCGTAAGGAAGCGAAATACGCAGCCAGGGCTGCAGCCAAGGCGAA 768
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      AAAGGCAACCACGGCCACCAAGGCTCCGGCAAAGGCGAAGGCAAAGGCTTAATCTTATTA 828
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      AATCGGAAGAAGTTTTGCCTTGACGGGGGAAAAATTTGGTGTGGTGATGGTGTTTGATGA 888
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      AGAGCTTCAATTTCAACATCAATGGTTCTTAAAGATGCTATGGGGCAAGGCTGCGTTGCA 948
consensus_5983#1      ------------------------------------------------------------
                                                                                  

consensus_5983#0      CAAGATT 955
consensus_5983#1      -------