cluster # 5987

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Anopheles gambiae
cluster # 5987 cluster # 5987 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5987#0 length = 436 sequences # 4

consensus_5987#1 length = 282 sequences # 1

consensusID : consensus_5987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 436
fasta sequence

                              [AGCTAAAAGCTGCGGAATTCCTCGAGAACTGTTG-GCCAACTG----G--GTCAAATTTGTGTA-CG-CCAAAATA-CGCAACTTCATTGTA-C-CG-TCCGAATCATTTTGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCG-GTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTTCCAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCC]

[-] EMBL CNS08VRH             [AGCTAAAAGCTGCGGAATTCCTCGAGAACTGTTGCGCCAACTG    G  GTCAAATTTGTGTA CG CCAAAATA CGCAACTTCATTGTA C CG TCCGAGTCATTTGGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAAACTGGGCCG GTAACAAGGAGGACGAGGAAGAATTGAGCGTATGGGAGGACCACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCATCTGTCTCGATAACGCCGAAAtt                                                          ]
[-] EMBL CNS08FEE             [                         GAACTGTTG GCCTACTGAACAGCTGTCAAATTTGTGTACCGCCCAAAATACCGCAACTTCATTGTAGCGCGCTCCGAATCATTTTGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCG GTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCTACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATTTTAA                                             ]
[+] EMBL CNS08FED             [                                                    aAAATTTGTGTA CG CCAAAATA CGCAACTTCATTGTA C CG TCCGAATCATTTTGTTGTTTTAATAAAATATTCACCAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGCGTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTTCCAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCC]
[+] EMBL BM636896             [                                                                                                                                      ccgAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCG GTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCCC                                 ]




>consensus_5987#0
AGCTAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGGTCAAATTTGTGTACGC
CAAAATACGCAACTTCATTGTACCGTCCGAATCATTTTGTTGTTTTAATAAAATATTCAC
CAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTC
TGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGG
ACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATT
TCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGT
CTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTTCCAAAAAAAAAAAAAAGGC
CACATGTGCCCGAGCC

consensusID : consensus_5987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [CCGCGGACGCGTGGGCGGACAAGGAGAACAAGGATAAACCTAAACTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCGATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCC]

[+] EMBL BM654027             [CCGCGGACGCGTGGGCGGACAAGGAGAACAAGGATAAACCTAAACTTGATCTCGGTCTTCTGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGGACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATTTCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGTCTCGATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCC]




>consensus_5987#1
CCGCGGACGCGTGGGCGGACAAGGAGAACAAGGATAAACCTAAACTTGATCTCGGTCTTC
TGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGG
ACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATT
TCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGT
CTCGATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5987#0      AGCTAAAAGCTGCGGAATTCCTCGAGAACTGTTGGCCAACTGGGTCAAATTTGTGTACGC 60
consensus_5987#1      ------------------------------------------------------------
                                                                                  

consensus_5987#0      CAAAATACGCAACTTCATTGTACCGTCCGAATCATTTTGTTGTTTTAATAAAATATTCAC 120
consensus_5987#1      ------------------------------------------------------------
                                                                                  

consensus_5987#0      CAAAAAGCATCATGTCGGACAAGGAGAACAAGGATAAACCTAAGCTTGATCTCGGTCTTC 180
consensus_5987#1      CCGCGGACGCGTGGGCGGACAAGGAGAACAAGGATAAACCTAAACTTGATCTCGGTCTTC 60
                      *      *     * **************************** ****************

consensus_5987#0      TGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGG 240
consensus_5987#1      TGGAAGAAGACGATGAATTCGAGGAGTTTCCCGCCGAAGACTGGGCCGGTAACAAGGAGG 120
                      ************************************************************

consensus_5987#0      ACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATT 300
consensus_5987#1      ACGAAGAAGAACTGAGCGTATGGGAGGACAACTGGGACGACGATAATGTTGAGGACGATT 180
                      ************************************************************

consensus_5987#0      TCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGT 360
consensus_5987#1      TCAACCAGCAACTACGAGCCCAACTCGAAAAGCATAAGTGATCACTGTTCGGTCGTCTGT 240
                      ************************************************************

consensus_5987#0      CTCAATAACGCCGAAAATCAATAAATGTTAAATTAAATCTTCCAAAAAAAAAAAAAAGGC 420
consensus_5987#1      CTCGATAACGCCGAAAATCAATAAATGTTAAATTAAATCTCC------------------ 282
                      *** ************************************ *                  

consensus_5987#0      CACATGTGCCCGAGCC 436
consensus_5987#1      ----------------