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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1243 fasta sequence
[GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG]
[+] EMBL BX625200 [GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACNACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAA ]
[+] EMBL BX622622 [ AGGGTAGCCCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTACAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACAAAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCCAATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGTGGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCACCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGTCGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTTACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTTTTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTG ]
[+] EMBL BX613632 [ ATGGAATTCGAGCATTGAATCTTACTCACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATACACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG]
[+] EMBL BX608078 [ ATACACGAAGCTCATGGAGGCTGTCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATGAGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACAACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAAGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGG ]
consensusID : consensus_5991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[CCGCCCACGCGTCCGGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAGTAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGTGTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT]
[+] EMBL BM612751 [CCGCCCACGCGTCCGGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATCGGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTGCTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATATCGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAACAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACAAATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCTAAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCATACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAGTAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGTGTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5991#0 GTGGGTTACGAACGACCTGCGTGGTTTGATAAGAAAAATGCCACTAATGAAAAGGGTAGC 60
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 CCTAAATTTCGCATAGCCACAACCAACGGATTTGGTAAACCACATTGGTTTGACCATGTA 120
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 CAAAGCGAGTATGAAAATTGTCGCGAAAGAATAGGAATGAGCGATTACAGTACATTTACA 180
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 AAGATCGATTTGTGGTCCAAAGGAAATGAAGTAGTCGATCTGCTACAGTATCTTTGCTCC 240
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 AATGATGTAGATCAACCAGTAGGATCAATTATTCACACCGGCATGCACAACCGCCATGGT 300
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 GGATATGAGAATGATTGCTCATTGGCGCGGTTATCAGAAAATCATTACATGATGATTGCA 360
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 CCGACTGTACAGCAGGCTCGTTGTAAAGCATGGATTGATCGACATTTACCACCGGGAGGT 420
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 CGTGTAAGCGTATCAGATGTGACGTCTATGTACACTGCAATCTGCATTATGGGACCTTTT 480
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 ACTCGGATTATGCTTTCCGAGCTTACGGATACTGATTTGTCTCCAAAAAGTTTTCCATTT 540
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 TTCACTTGTAAGGAACTGGACGTCGGTCTTGCAAATGGAATTCGAGCATTGAATCTTACT 600
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 CACACTGGAGAACTCGGCTATGTCCTTTACATACCAAACGAATTCGCATTACACGTATAC 660
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 ACGAAGCTCATGGAGGCTGGCCAAAAATATGGAATACGACACTGCGGCTATTATGCTATG 720
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 AGAACACTTCGAGTAGAAAAGTTTTTTGCATTTTGGGGTCAGGATTTGGACACGTTTACA 780
consensus_5991#1 ------------------------------------------------------------
consensus_5991#0 ACTCCTTTAGAGTGCGGACGAATGTGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATC 840
consensus_5991#1 -CCGCCCACGCGTCCGG-------TGGCGCGTAAAGTTTAATAAAGGGGTAGATTTTATC 52
* * * ** *** ************************************
consensus_5991#0 GGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTG 900
consensus_5991#1 GGAAGAGATGCTTTGCTTCAGCAAAGAGATAAAGGAGTGGAACGTATGTACATACAGTTG 112
************************************************************
consensus_5991#0 CTGATCAACGATCACGATCCTGACCTTGACTTGTGGAGTTGGGGCGGTGAGCCGATATAT 960
consensus_5991#1 CTGATCAACGATCACGATCCTGACCTAGACTTGTGGAGTTGGGGCGGTGAGCCGATATAT 172
************************** *********************************
consensus_5991#0 CGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAA 1020
consensus_5991#1 CGTGATGGGATATACTGTGGGCAAACAACTACTACCGCATACGGATTTACTTTCAAAAAA 232
************************************************************
consensus_5991#0 CAGATTTGTCTCGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACA 1080
consensus_5991#1 CAGATTTGTCTTGGATTCGTAAAAAATTTGCATTCAAGTGGACGGGCACTTCCGGTAACA 292
*********** ************************************************
consensus_5991#0 AATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCT 1140
consensus_5991#1 AATGATTACATACTGAGTGGCGATTATGAGGTTGAAATAGCTGGAATACGTTATCCCGCT 352
************************************************************
consensus_5991#0 AAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCA 1200
consensus_5991#1 AAGGCTAATCTTCATTCTCCAAACTTGCCCACCAAGTACCCGGATCAAGAACGAGAGGCA 412
************************************************************
consensus_5991#0 TACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGG----------------- 1243
consensus_5991#1 TACAAAGCTACGCGTGATAAGATGGACGAGTCGAATCTTTTGGCTTATCGACCCAATAAG 472
*******************************************
consensus_5991#0 ------------------------------------------------------------
consensus_5991#1 TAATCCGTAGGACAATGGTTTGAGCGTTAGATCATTATTTGTTCTAATATTGTCGAATGT 532
consensus_5991#0 ----------------------------------------------------
consensus_5991#1 GTGAAAAATAACAGTTTGTTGCTGATTCGGTTAAAATAAAGGATTTTATTTT 584
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||