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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1254 fasta sequence
[CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACCGGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGTGCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCCTGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCACCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCGGGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCAAATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCATCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACCAATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTACCATGC]
[+] EMBL BM597070 [CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCAC ]
[+] EMBL BM649276 [ ccgAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCAC CTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACAGCCAGCGGCGCTTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTATCAAGG ]
[+] EMBL BM575985 [ ccgGTGCATTGAAACTCCGAAGTCGAACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAATCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGTTGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTACTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTTTGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGGTACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCGCAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGG ]
[+] EMBL BX603440 [ AAAGAAGAAACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCTGTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTTTGTTCGGGGAACTACCCGCAAAAGCAGTTTTATCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATGATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACCGGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGTGCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCCTGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCACCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCGGGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCAAATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCATCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACCAATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTACCATGC]
consensusID : consensus_5993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence
[CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAAGTAAGTTTTTTTG]
[+] EMBL BM615120 [CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGCTATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAAGTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGAAGTAAGTTTTTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5993#0 -----------CCGGAAAAGAAGTGTGTTGTGCGTTAAGTATGAGCGAGTCGTGAAGTGC 49
consensus_5993#1 CCGCCCACGCGTCCGAAAAGAAGTGTGTTGTGTGTTAAGTATGAGCGAGTCGTGAAGTGC 60
* ****************** ***************************
consensus_5993#0 TATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAA 109
consensus_5993#1 TATATATTATTCCGTTTGCAATGCAAAGAGAAAACTTTGTTCGTATGCGTGCGAAAATAA 120
************************************************************
consensus_5993#0 GTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGA 169
consensus_5993#1 GTTAAAATGTAAACATTCGCGCTCGGACTCGGGCTCTGTGCATTGAAACTCCGAAGTCGA 180
************************************************************
consensus_5993#0 ACGTTCTGCGTGTTTCCGTGGATCTTGCAACCAGTATGAACTGTTCGAACGAGAATGGAA 229
consensus_5993#1 AG----TAAGTTTTTTTG------------------------------------------ 194
* * ** *** *
consensus_5993#0 TCAAATTCGATGAACAAGCAATATCATTGGTTCAAAAGACGACGGAGGATTTTCGTCAGT 289
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 TGCCGACACTGACCTCACCGACATTCGTTCTAACGGCATCACAAACTATCACATCACCTA 349
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 CTAGGACGATACCAACACCTGCTTCGCCTCCGATCCGGAACGCCCATCACAATAAGCCTT 409
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 TGTTTAAGGGCATACATCATTCGGCTGCTACTGCAAAGGACCAATCGCCAGTATCATTGG 469
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 TACAACCGACAGAAGCATTTTTCACAGTAGTGTCACTGGAAGGAACTAGCCCAAAGAAGA 529
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 AACCGAGCAGTTGCTTATATGAGTACGATCCTGTGACGCAACAGACGGCCAGCGGCGCCT 589
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 GTCTATCGTTTTACGAACAGCAACAGTTTGGAAACTACAGTCTGTTCGGGGAACTACCCG 649
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 CAAAAGCAGTTTTGTCAAGGCCTTCCTCATTGCCAGTTACCAAGGCAACGATCACTAATG 709
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 ATAGGAAGCGATCATCGATAGACGGTGACACGATCGCAATGCGCGATAGTTGGCTGTACC 769
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 GGCTGCAGCGCATAGTGGCCTCACAGCGTAGGCCCATGTTCAGCTATCTGCTTCCCTTGT 829
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 GCCTGCTGATCGGGATCATGCTATTAATCTACACATTCAGAGATACCGCCAAAGGTGTCC 889
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 TGTTCTGGATCGAAACGCAGAACACGTGGATAATATTTGTCATCTTTCTGTGCATGTTCA 949
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 CCGTCGTAAGTTTTCCCGTAACGGTCGGTTATCTAGTGCTGATGTTTGGGTTCATTCGCG 1009
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 GGCTGCTGACTGTGGTGATCGGCGCTAATCTTGGTGTGGCCATTGCGCACAATACAATCA 1069
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 AATCGCTTCAAAGCAAACTGCCCGTACACAAGCTCATCAGAAACGAAACCGGCCGTGCCA 1129
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 TCCTTCGGGTTATATCCGGACCAAGGGCCTTCAAAATTGTACTCTTTGCACGCTTAAACC 1189
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 AATACCATTCGGGCTGCAAAAACCATATTCGGCATAAGCTCCGTAAAATACCGGAGCTAC 1249
consensus_5993#1 ------------------------------------------------------------
consensus_5993#0 CATGC 1254
consensus_5993#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||