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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1377 fasta sequence
[TCGCCGAGGTNCTATCTTTCCATCCTCGGCACGTCTAGTGCGTCGTCCGTTACGACGCTTTCGATGGGTGGTAGTGGCCCCACCGTCAACCAGAACGTGCTCATCAACCGTGCATCGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACCACCACCACCACCACCATCGCGTACGACGATGACGATGACGAACGGTGCTGCTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATGACAACGATCGTCAACAGCAGCAGCAGCGTGTGAATGGTGGTGGCATCGATCACCAGCATCTTTACGAAGCGCTCACGCCCATTGCATCGCCACCGCGTGCCAAGCAACCAGGCGAGCAGGCGGCATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGTCTGGTGAAGCGTCCTACTTCGGCTGTGTCAGCTACGACGCCAACGTCGCCAACAAACCCAACAGCCACGACCGGCACAGGAACCAACAACAGTCGTGGCTGGGTGTTACAGCAAGTGCGAAGATTTCAGTGAAGATTTCACACTAGTATTTTGGTAACCTGTATTACATGTTTTAGTGTAACAGCTGGTGGTGGTGCTGAAACACGCCCCACGTGTGAGAAAGAGAGCATCATAACGCCGTCTCTGTCGCGCGCTCTTTCTCTCGGAAGATGGCCAAAGAAATGTAATTTCGATCAATCTAATTGATGTAAACTGAAAGGGAAACCCTGTAAGTAGCAAGAATATAGAAGTGCGTCAGGCCGGATCCACATCGCAACACCTAGTTTAGGCAGCAAATGCGTGCGTGTGTGCAGTTTTGCAATATATTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGGCAAATTACCCCGCAATACAATAACCGTAGTGTGTAGTAGTAATGTAGTAGTGATTTCCTTTTATGGCATGAATTTGCAGAAAACGGCGGAAAGCGGTTTGCCATCTTTAGTGCCTTTTACGGCGGCCTTTTAAACGTGTGCATTCTGAAGAGTTTTATGAAAGTTTATTTTTTATTTTAACTTATTGTATGTTCAAACATCACCCTTATACAGCATTGCCTTCGTGCATCCGAAGGTGAGCTAGCAATAGAGCGTAGCGCAAAGGAGAAAGTATAGAAAATTTACTAGCTGCAATCAATAAAATACAAAGTGGTAGCATT]
[+] EMBL AL931865 [TCGCCGAGGTNCTATCTTTCCATCCTCGGCACGTCTAGTGCGTCGTCCGTTACGACGCTTTCGATGGGTGGTAGTGGCCCCACCGTCAACCAGAACGTGCTCATCAACCGTGCATCGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACCACCACCACCACCACCATCGCGTACGACGATGACGATGACGAACGGTGCTGCTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATGACAACGATCGTCAACAGCAGCAGCAGCGTGTGAATGGTGGTGGCATCGATCACCAGCATCTTTACGAAGCGCTCACGCCCATTGCATCGCCACCGCGTGCCAAGCAACCAGGCGAGCAGGCGGCATCGAAC ]
[+] EMBL BM636291 [ ccgGGTGGTGGCATCGATCACCAGCATCTTTACGAAGCGCTCACGCCCATTGCATCGCCACCGCGTGCCAAGCAACCAGGCGAGCAGGCGGCATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGTCTGGTGAAGCGTCCTACTTCGGCTGTGTCAGCTACGACGCCAACGTCGCCAACAAACCCAACAGCCACGACCGGCACAGGAACCAACAACAGTCGTGGCTGGGTGTTACAGCAAGTGCGAAGATTTCAGTGAAGATTTCACACTAGTATTTTGGTAACCTGTATTACATGTTTTAGTGTAACAGCTGGTGGTGGTGCTGAAACACGCCCCACGTGTGAGAAAGAGAGCATCATAACGCCGTCTCTGTCGCGCGCTCTTTCTCTCGGAAGATGGCCAAAGAAATGTAATTTCGATCAATCTAATTGATGTAAACTGAAAGGGAAACCCTGTAAGTAGCAAGAATATAGAAGTGCGTCAGGCCGGATCCACATCGCAACACCTAGTTTAGGCAGCAAATGCGTGCGTGTGTGCAGTTTTGCAATATATTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGG ]
[+] EMBL BM622418 [ ccgTTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGGCAAATTACCCCGCAATACAATAACCGTAGTGTGTAGTAGTAATGTAGTAGTGATTTCCTTTTATGGCATGAATTTGCAGAAAACGGCGGAAAGCGGTTTGCCATCTTTAGTGCCTTTTACGGCGGCCTTTTAAACGTGTGCATTCTGAAGAGTTTTATGAAAGTTTATTTTTTATTTTAACTTATTGTATGTTCAAACATCACCCTTATACAGCATTGCCTTCGTGCATCCGAAGGTGAGCTAGCAATAGAGCGTAGCGCAAAGGAGAAAGTATAGAAAATTTACTAGCTGCAATCAATAAAATACAAAGTGGTAGCATT]
consensusID : consensus_5996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[AGATCCCGAGGTTATGCTTCGATGGGTGGTAGTGGCCCACCGTCACCAGAACGTGCTCATCAACCGTGCATCTGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACACACACAACAACATCGGTACGACGATACGATACGAACGGTGCTGCGTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATTGACAACGATCGTCAACAGCAGCAGCAGCGGTGTGAATTGGTGGTGGCATCGATCACCAGCATCTTTACGGAAGGCGCTCACGCCCATTGCGATTTGCACCGGTNGCCAAGCAACCCAGGCGAGCAGGCGGATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAAA]
[+] EMBL AL693765 [AGATCCCGAGGTTATGCTTCGATGGGTGGTAGTGGCCCACCGTCACCAGAACGTGCTCATCAACCGTGCATCTGATGCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGCATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCATGAATACACACACAACAACATCGGTACGACGATACGATACGAACGGTGCTGCGTTCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACAGTGGTGATTGACAACGATCGTCAACAGCAGCAGCAGCGGTGTGAATTGGTGGTGGCATCGATCACCAGCATCTTTACGGAAGGCGCTCACGCCCATTGCGATTTGCACCGGTNGCCAAGCAACCCAGGCGAGCAGGCGGATCGAACGGTGGTGATTCGGGTGGTGGTCCGCAAA]
consensusID : consensus_5996#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[CAAGGCCAAGAATCGCCACGAGGTGTNATTCGTGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGGTCTGGTGAAGCGTCCTACGTTCGGCTGTGTTCAGCTACGACGCCAACGTTNGCCAAGCAAACCCAACAGCCACGGACCGGCACAGGAACCAAGCAAGCAGGTCGTGGCGTGGGGGTGTTACAGCGAA]
[+] EMBL BX468023 [CAAGGCCAAGAATCGCCACGAGGTGTNATTCGTGGTGGTGGTCCGCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGGTCTGGTGAAGCGTCCTACGTTCGGCTGTGTTCAGCTACGACGCCAACGTTNGCCAAGCAAACCCAACAGCCACGGACCGGCACAGGAACCAAGCAAGCAGGTCGTGGCGTGGGGGTGTTACAGCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5996#0 TCGCCGAGGTNCTATCTTTCCATCCTCGGCACGTCTAGTGCGTCGTCCGTTACGACGCTT 60
consensus_5996#1 -----------------------------------------AGATCCCGAGGTTATGCTT 19
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 TCGATGGGTGGTAGTGGCCCCACCGTCAACCAGAACGTGCTCATCAACCGTGCATC-GAT 119
consensus_5996#1 -CGATGGGTGGTAGTGGCCC-ACCGTCA-CCAGAACGTGCTCATCAACCGTGCATCTGAT 76
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 GCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGC 179
consensus_5996#1 GCAGTCGGCGAATGGTGGTAACGGTAGTAACGATGCGCAACAACGGGACTCGGTGCTGGC 136
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 ATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCAT 239
consensus_5996#1 ATCGAGCTCCTCCAGTGACAGTGTATGCGACGAACACGCCATTCCCGCTGGATCATCCAT 196
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 GAATACCACCACCACCACCACCATCGCGTACGACGATGACGATGACGAACGGTGCTGC-T 298
consensus_5996#1 GAATACACACACAAC----AACATCG-GTACGACGAT-ACGAT-ACGAACGGTGCTGCGT 249
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 TCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACA 358
consensus_5996#1 TCTATGAGCGAACGGTCGAAGAGTGCCTGGAGCATGATTTTCGCGATTCCGCCGTCTACA 309
consensus_5996#2 ----------CAAGGCCAAGAATCGCCACGAG-GTGTNATTCGTGGTGGTG--GTCCGCA 47
* ** * * * *** *** ** **** * * * *** **
consensus_5996#0 GTGGTGAT-GACAACG--ATCGTCAACAGCAGCAGCAGCG-------TGTGAAT-GGTGG 407
consensus_5996#1 GTGGTGATTGACAACG--ATCGTCAACAGCAGCAGCAGCGG------TGTGAATTGGTGG 361
consensus_5996#2 ACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGGTCTGGTGA 107
** * * * * * * * * **** * ** ** * ****
consensus_5996#0 TGGCATCGATCACCAGC-ATCTTTACGAA--GCGCTCACGCCCATTGC--ATCGCCACCG 462
consensus_5996#1 TGGCATCGATCACCAGC-ATCTTTACGGAAGGCGCTCACGCCCATTGCG-ATTTGCACCG 419
consensus_5996#2 AGCGTCCTACGTTCGGCTGTGTTCAGCTACGACGCCAACGTTNGCCAAGCAAACCCAACA 167
* * * * ** * ** * * *** *** * ** *
consensus_5996#0 CGTGCCAAGCAACC-AGGCGAGCAGGCGGCATCGAACGGTGGTGATTCGGGTGGTGGTCC 521
consensus_5996#1 GTNGCCAAGCAACCCAGGCGAGCAGGCGG-ATCGAACGGTGGTGATTCGGGTGGTGGTCC 478
consensus_5996#2 GCCACGGACCGGCACAGG-AACCAAGCA--AGCAGGTCGTGGCG-TGGGGGTGTTA--CA 221
* * * * *** * ** ** * * **** * * ***** * *
consensus_5996#0 GCAACGGAATTCGGCTGCACCACCACCGATCCCAGCGAAACCGGCACATCTGGGTCTGGT 581
consensus_5996#1 GCAAA------------------------------------------------------- 483
consensus_5996#2 GCGAA------------------------------------------------------- 226
** *
consensus_5996#0 GAAGCGTCCTACTTCGGCTGTGTCAGCTACGACGCCAACGTCGCCAACAAACCCAACAGC 641
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 CACGACCGGCACAGGAACCAACAACAGTCGTGGCTGGGTGTTACAGCAAGTGCGAAGATT 701
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 TCAGTGAAGATTTCACACTAGTATTTTGGTAACCTGTATTACATGTTTTAGTGTAACAGC 761
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 TGGTGGTGGTGCTGAAACACGCCCCACGTGTGAGAAAGAGAGCATCATAACGCCGTCTCT 821
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 GTCGCGCGCTCTTTCTCTCGGAAGATGGCCAAAGAAATGTAATTTCGATCAATCTAATTG 881
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 ATGTAAACTGAAAGGGAAACCCTGTAAGTAGCAAGAATATAGAAGTGCGTCAGGCCGGAT 941
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 CCACATCGCAACACCTAGTTTAGGCAGCAAATGCGTGCGTGTGTGCAGTTTTGCAATATA 1001
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 TTTATCACTGCAGTTTTATCGTCTATTCGAGAAGCCCTTACTAACCATACGGCAGGCAAA 1061
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 TTACCCCGCAATACAATAACCGTAGTGTGTAGTAGTAATGTAGTAGTGATTTCCTTTTAT 1121
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 GGCATGAATTTGCAGAAAACGGCGGAAAGCGGTTTGCCATCTTTAGTGCCTTTTACGGCG 1181
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 GCCTTTTAAACGTGTGCATTCTGAAGAGTTTTATGAAAGTTTATTTTTTATTTTAACTTA 1241
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 TTGTATGTTCAAACATCACCCTTATACAGCATTGCCTTCGTGCATCCGAAGGTGAGCTAG 1301
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 CAATAGAGCGTAGCGCAAAGGAGAAAGTATAGAAAATTTACTAGCTGCAATCAATAAAAT 1361
consensus_5996#1 ------------------------------------------------------------
consensus_5996#2 ------------------------------------------------------------
consensus_5996#0 ACAAAGTGGTAGCATT 1377
consensus_5996#1 ----------------
consensus_5996#2 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||