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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1481 fasta sequence
[AAATTTGTTACATTCGACCATTCGATACGGTTTTCATTCCGTGCGGACACGTCGTGGCATGTGGCAAGTGTGCCGCCTCTACTACAAAGTGTCCGATGTGCAATGAGTCGTATACTAGTGTTCAACGCATATTCCTTTCTTAGAGGATGTAGGATTTTGCAACTTATCATAACAGGTCGTGCGACACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGC-GCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGC-GTGTGCCATTCTCGGGTTCAC-GGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAG-AATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCATGTAGGGAGCCAAGCAATATACAAATAACTAGCTTGGGCCAA-AAACTGAGTCATTCCAAAAACCATTCATTCCAAA-TAAAATATTCCA-TATTG-TCTG-TACTTGGGATAGNNTGTATCGTGCCCGTATCCCCTCANG-TTCGAAAGGTTGCTCGCAACAAACACCATGACACCGAGA---TTATATATTAATCACACGTAGAAACGTCGACTCATCTGGGCAGCCTCGGGACCGGGGGGATGTCCGGCNTAATCCGATTTCCAACGGAATAATGG-TAGAGGAGGCGAAATGNTAAAAAAGCCTCGTCACAAAAAATAAAACAATAA-AAAAACAACGGATAATGGTCAAAGAAATGTTAAATTCATGTAAATGTTTTAAAATTCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTGAATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACTAGACACTAGATTGCTGCATAACAAATGGTTTTTGCTATCCGGATCATCGCAGAACATGTTCACCAACTGTCAAATTCATGGGCACGATTAAGCCGCCCACTGGTTAATCCGTCCCCGAAAAATCGACGTTCTTCTGTAATATAGATTCGTATAAAATTTTTTGTAACGTAATACGTAATATGTAATAATACTACAAAAATAAAATATGTCAGTTCAGCATAAAATTCAACACAAGGCAGCATGTG]
[+] EMBL BX626648 [AAATTTGTTACATTCGACCATTCGATACGGTTTTCATTCCGTGCGGACACGTCGTGGCATGTGGCAAGTGTGCCGCCTCTACTACAAAGTGTCCGATGTGCAATGAGTCGTATACTAGTGTTCAACGCATATTCCTTTCTTAGAGGATGTAGGATTTTGCAACTTATCATAACAGGTCGTGCGACACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGC GCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGC GTGTGCCATTCTCGGGTTCAC GGGTTGACNAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGNTTTCAAACATCGTGCCGCAGTCATAG AATTGACTCATAACGCATT ]
[+] EMBL AL931971 [ tggcttctGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTT ATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGCTGCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCTGTGTGCCATTCTCGGGTTCACTGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGCAATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCATGTAGGGAGCCAAGCAATATACAAATAACTAGCTTGGGCCAA AAACTGAGTCATTCCAAAAACCATTCATTCCAAA TAAAATATTCCA TATTG TCTG TACTTGGGATAGNNTGTATCGTGCCCGTATCCCCTCANG TTCGAAAGGTTGCTCGCAACAAACACCATGACACCGAGA TTATATATTAATCACACGTAGAAACGTCGACTCATCTGGGCAGCCTCGGGACCGGGGGGATGTCCGGCNTAATCCGATTTCCAACGGAATAATGG TAGAGGAGGCGAAATGNTAAAAAAGCCTCGTCACAAAAAATAAAACAATAA AAAAAC ]
[+] EMBL BM617879 [ ccgGTGTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGC GTGTGCCATTCTCGGGTTCAC GGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAG AATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCATGTAGGGAGCCAAGCAATATACAAATAACTAGC TGGCCCAACAAACTGAGTCATTCCAAAAA CATTCATTCCAAACTAAAATATTCCATTATTGTTTTGTTACTTGGGATAG TTGTATCGTGCCCGTATCCCCTCAGGTTTCG AAGGTTGCTCGCAACAAACACCATGACA CGAGATTTTTATATATAAAT ACA GTAG AACGTCGA TTATCTGGGCAG CTCGGGACCGGGCGGATGT CGG TTAAT CGATTTCC ACGG ATAATGGTTAGA GAGGCG AATGCT AAAAAGCCTCGT A AAAAAATAAAACAACAACAACAACAACGGATAATGGTCAAAGAAATGTTAAATTCATGTAAATGTTTTAAAATTCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTGAATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACTAGACACTAGATTGCTGCATAACAAATGGTTTTTGCTATCCG ]
[-] EMBL BX466744 [ TGTAAATGTTTTAAAATTCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTGAATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACTAGACACTAGATTGCTGCATAACAAAT GTTTTTGCTATCCGGATCATCGCAGAACATGTTCACCAACTGTCAAATTCATGGGCACGATTAAGCCGCCCACTGGTTAATCCGTCCCCGAAAAATCGACGTTCTTCTGTAATATAGATTCGTATAAAATTTTTTGTAACGTAATACGTAATATGTAATAATACTACAAAAATAAAATATGTCAGTTCAGCATAAAATTCAACACAAGGCAGCATGTG]
consensusID : consensus_5999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 980 fasta sequence
[CAGATCCCCCCGGTTATACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTATGTGTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTCACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGGATCTGGAGACGAATTTGAATATCATAGTAGGGAGCCAAGCAATATACAAATAACTAGCTGGCCAACAAACTGAGTCATTCCAAAAACATTCATTCCAAACTAACACATATTCCCATTATATGTCACTGTACAACTATGGGATAGTCAGNATCGTTGCCCGTATCCCCTCAGGTTTCGAAGGTNAGACTCGCCAACCAAAGCACCATGACACGAGATACACACTATATANAATANCAGTACGAACGTCGANAATCTGGGCANGCTACCGGGGGAAACCCGGNGACGGAATTGTCACGGACACACACCGGAGTACNCCCAAGGGGATAAACTAGGGNANACCAAGAAGGGCGGACACTGGCTCAAAAACANNAAGGCACTCCGGACAANNAANAACATCAACAAAAGCACAATAA]
[+] EMBL AL930347 [CAGATCCCCCCGGTTATACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATATGTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAATCCTTTATTATTTTAGATTTTATGTGTTTGCGTTAGTTGCCGTTTCGCTAATATCAGTTTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTACGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACTTTTACGATTATCATGCCGTGTGTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTTTGACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTCACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTCTATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGACTCATCAGCAGTTTCCCGGATCTGGAGACGAATTTGAATATCATAGTAGGGAGCCAAGCAATATACAAATAACTAGCTGGCCAACAAACTGAGTCATTCCAAAAACATTCATTCCAAACTAACACATATTCCCATTATATGTCACTGTACAACTATGGGATAGTCAGNATCGTTGCCCGTATCCCCTCAGGTTTCGAAGGTNAGACTCGCCAACCAAAGCACCATGACACGAGATACACACTATATANAATANCAGTACGAACGTCGANAATCTGGGCANGCTACCGGGGGAAACCCGGNGACGGAATTGTCACGGACACACACCGGAGTACNCCCAAGGGGATAAACTAGGGNANACCAAGAAGGGCGGACACTGGCTCAAAAACANNAAGGCACTCCGGACAANNAANAACATCAACAAAAGCACAATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5999#0 AAATTTGTTACATTCGACCATTCGATACGGTTTTCATTCCGTGCGGACACGTCGTGGCAT 60
consensus_5999#1 ------------------------------------------------------------
consensus_5999#0 GTGGCAAGTGTGCCGCCTCTACTACAAAGTGTCCGATGTGCAATGAGTCGTATACTAGTG 120
consensus_5999#1 ------------------------------------------------------------
consensus_5999#0 TTCAACGCATATTCCTTTCTTAGAGGATGTAGGATTTTGCAACTTATCATAACAGGTCGT 180
consensus_5999#1 -----------------------------------------------CAGATCCCCCCG- 12
** * * **
consensus_5999#0 GCGACACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATAT 240
consensus_5999#1 GTTATACTTGTACGGTTTGTTGTGAGTCAATATCATGAGTTCCGTAGTAGCGGAACATAT 72
* * *******************************************************
consensus_5999#0 GTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAA 300
consensus_5999#1 GTTTAATTGAATCATGAGGAAACGTTCATGTGTCGAGTGGTCTTGAGTTAAATCGCCAAA 132
************************************************************
consensus_5999#0 TCCTTTATTATTTTAGATTTTTATGTGTTTTGCGTTAGTTGCCGTTTCGCTAATATCAGT 360
consensus_5999#1 TCCTTTATTATTTTAGATTTT-ATGTGTTT-GCGTTAGTTGCCGTTTCGCTAATATCAGT 190
********************* ******** *****************************
consensus_5999#0 TTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTA 420
consensus_5999#1 TTGTCCAGAGTATAACTAGAGCCTCGCGAATCTGATACACTGAGACTGACGGGTCGAGTA 250
************************************************************
consensus_5999#0 CGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACT 480
consensus_5999#1 CGGGCTTTGAACGACGAAAACGGCGCTCCACTGCGATCGATCCCATGATCAAGGGACACT 310
************************************************************
consensus_5999#0 TTTACGATTATCATGCCGTGTGTTTTATCATTGCTGTGGCATACTGCTTAAAAGTGTT-G 539
consensus_5999#1 TTTACGATTATCATGCCGTGTGTTT-ATCATTGCTGTGGCATACTGCTTAAAAGTGTTTG 369
************************* ******************************** *
consensus_5999#0 ACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTC 599
consensus_5999#1 ACGATACTTGGTATTACAGAACACAATTCCATGTCTGGGGCGTGTGCCATTCTCGGGTTC 429
************************************************************
consensus_5999#0 ACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTC 659
consensus_5999#1 ACGGGTTGACAAATGGCGAATGTATGTCGCATTCATGGACTAATGTTCCGCAGTTCCGTC 489
************************************************************
consensus_5999#0 TATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGAC 719
consensus_5999#1 TATCATCACCGTTTTCAAACATCGTGCCGCAGTCATAGAATTGACTCATAACGCATTGAC 549
************************************************************
consensus_5999#0 TCATCAGCAGTTTCCCGCGATCTGGAGACGAATTTGAATATCAT-GTAGGGAGCCAAGCA 778
consensus_5999#1 TCATCAGCAGTTTCCCG-GATCTGGAGACGAATTTGAATATCATAGTAGGGAGCCAAGCA 608
***************** ************************** ***************
consensus_5999#0 ATATACAAATAACTAGCTTGGGCCAAAAACTGAGTCATTCCAAAAACCATTCATTCCAAA 838
consensus_5999#1 ATATACAAATAACTAGCT-GGCCAACAAACTGAGTCATTCCAAAAAC-ATTCATTCCAAA 666
****************** ** * * ********************* ************
consensus_5999#0 TAAA---ATATTCC----ATAT-TGTCTGTACT----TGGGATAGNNTGTATCGT-GCCC 885
consensus_5999#1 CTAACACATATTCCCATTATATGTCACTGTACAACTATGGGATAGTCAGNATCGTTGCCC 726
** ******* **** * ****** ******** * ***** ****
consensus_5999#0 GTATCCCCTCANGTTCGAAAGGTTG--CTCGC-AAC--AAACACCATGACACCGAGATTA 940
consensus_5999#1 GTATCCCCTCAGGTTTCGAAGGTNAGACTCGCCAACCAAAGCACCATGACACGAGATACA 786
*********** *** ***** ***** *** ** *********** *
consensus_5999#0 ---TATATTAATCACACGTAGAAACGTCGACTCATCTGGGCAGCCTCGGGACCGGGGGGA 997
consensus_5999#1 CACTATATANAATANCAGTACGAACGTCGANA-ATCTGGGCANGCT----ACCGGGGGAA 841
***** * * *** ******** ********* ** ******** *
consensus_5999#0 TGTCCGGCNTAATCCGATTTCCAACGGAATAATGGTAGAGGAGGCGAAATGNTAAAAAAG 1057
consensus_5999#1 -ACCCGGNGA---CGGAATTGTCACGGACACACACCGGAGTACNCCCAAGGGGATAAAC- 896
**** * ** ** ***** * *** * * ** * * ***
consensus_5999#0 CCTCGTCACAAAAAATAAAACAATAAAAAAACAACGGATAATGGTCAAAGAAATGTTAAA 1117
consensus_5999#1 ---------------TAGGGNANACCAAGAAGGGCGGACACTGGCTCAA-AAACANNAAG 940
** * ** ** **** * *** ** *** **
consensus_5999#0 TTCATGTAAATGTTTTAAAAT-TCACTGGTTTCACTAGAAATTTAGTAGAATATTTTTTG 1176
consensus_5999#1 GCACTCCGGACAANNAANAACATCAACAAAAGCACAATAA-------------------- 980
* * * ** *** *** * **
consensus_5999#0 AATCAATAACAATAGATTTAAAATTGTCTTTTATCAAAAATGAAGTTTTAAAATATCACT 1236
consensus_5999#1 ------------------------------------------------------------
consensus_5999#0 AGACACTAGATTGCTGCATAACAAATGGTTTTTGCTATCCGGATCATCGCAGAACATGTT 1296
consensus_5999#1 ------------------------------------------------------------
consensus_5999#0 CACCAACTGTCAAATTCATGGGCACGATTAAGCCGCCCACTGGTTAATCCGTCCCCGAAA 1356
consensus_5999#1 ------------------------------------------------------------
consensus_5999#0 AATCGACGTTCTTCTGTAATATAGATTCGTATAAAATTTTTTGTAACGTAATACGTAATA 1416
consensus_5999#1 ------------------------------------------------------------
consensus_5999#0 TGTAATAATACTACAAAAATAAAATATGTCAGTTCAGCATAAAATTCAACACAAGGCAGC 1476
consensus_5999#1 ------------------------------------------------------------
consensus_5999#0 ATGTG 1481
consensus_5999#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||