cluster # 60

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Anopheles gambiae
cluster # 60 cluster # 60 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_60#0 length = 583 sequences # 1

consensus_60#1 length = 518 sequences # 1

consensusID : consensus_60#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [GAAATGATAAGATCGCGATAGTAAGTTATTGTTTAAGGCAAAACGAAGGAGATTTTTGGGAAATTTAATAATCCTGCCACTGTCGGAGAAAAAACACACACGCAAACTAACACTTTCCTAAACCGTAACACCGTGCAGTGGCTAAACATTCATTTGCTTCTTTCGTGCCTCCCGGTAACTACTTACATTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTTTTTTATGTGAATGGCCCAGTTTTTCCCTTAAACATACCCACACACACACACACTCACACACGCGCGCACCCAATAATTGTATGACACGATTGTAAGAGTTAGAGGGGTTGAATTAGAATACAAAATAGAAGAACCTCTACTTAAATGGTGCTTTTTGCTCGAAAATAATGATAAAACAAAATAAAACAAAAAAAAACATCACAAATCCAAATCCACAGAAACAGGAAGGAGTTTTAAGAATAGTTAATGCAAAATATACCTTTCCAAATCCATTCAATTTAAAAACAAAAAACAAACACGTACAAGTTTTTTCTCGAACAAACAATAAAAACAACGACAATAAACAACCTAATAA]

[+] EMBL BM638236             [GAAATGATAAGATCGCGATAGTAAGTTATTGTTTAAGGCAAAACGAAGGAGATTTTTGGGAAATTTAATAATCCTGCCACTGTCGGAGAAAAAACACACACGCAAACTAACACTTTCCTAAACCGTAACACCGTGCAGTGGCTAAACATTCATTTGCTTCTTTCGTGCCTCCCGGTAACTACTTACATTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTTTTTTATGTGAATGGCCCAGTTTTTCCCTTAAACATACCCACACACACACACACTCACACACGCGCGCACCCAATAATTGTATGACACGATTGTAAGAGTTAGAGGGGTTGAATTAGAATACAAAATAGAAGAACCTCTACTTAAATGGTGCTTTTTGCTCGAAAATAATGATAAAACAAAATAAAACAAAAAAAAACATCACAAATCCAAATCCACAGAAACAGGAAGGAGTTTTAAGAATAGTTAATGCAAAATATACCTTTCCAAATCCATTCAATTTAAAAACAAAAAACAAACACGTACAAGTTTTTTCTCGAACAAACAATAAAAACAACGACAATAAACAACCTAATAA]




>consensus_60#0
GAAATGATAAGATCGCGATAGTAAGTTATTGTTTAAGGCAAAACGAAGGAGATTTTTGGG
AAATTTAATAATCCTGCCACTGTCGGAGAAAAAACACACACGCAAACTAACACTTTCCTA
AACCGTAACACCGTGCAGTGGCTAAACATTCATTTGCTTCTTTCGTGCCTCCCGGTAACT
ACTTACATTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTTTTTTATGTGAAT
GGCCCAGTTTTTCCCTTAAACATACCCACACACACACACACTCACACACGCGCGCACCCA
ATAATTGTATGACACGATTGTAAGAGTTAGAGGGGTTGAATTAGAATACAAAATAGAAGA
ACCTCTACTTAAATGGTGCTTTTTGCTCGAAAATAATGATAAAACAAAATAAAACAAAAA
AAAACATCACAAATCCAAATCCACAGAAACAGGAAGGAGTTTTAAGAATAGTTAATGCAA
AATATACCTTTCCAAATCCATTCAATTTAAAAACAAAAAACAAACACGTACAAGTTTTTT
CTCGAACAAACAATAAAAACAACGACAATAAACAACCTAATAA

consensusID : consensus_60#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [CCGCCGGTAACTACTTACAGTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTTTTTATGTGAATGGCCCAGTTTTTCCCTTAAACATACCCACACACACACACTCACACACGCGCGCACCCAATAATTGTATGACACGATTGTAAGAGTTAGAGGGGTAAATTAGAATACAAAATAGACAAAAAGGGGAAAACTCTCATCGGATGTCTTTGCAGCGTGCTTTTTGCTCGAACATAATAATAAAAAATAAAACAAAAAAAAAACAACACAAATCCAAATCCACAGAAACAGGGGGAGAGTGAAGAATAGTTAATGCAAAATATACCTTTCCTAATCCATTCAATTTAAAAATCAAAAAACAAACACGTACAAGTTTTTCTCGAATAAACAAAAAACAACAATAAACAAAGTAATAATCTCAACTCATGAACAAAGTCCAGCTAACAATAATAGCAGAGCGCCAAAAGGATAAAAGAAACTAAACAAAACTGTACCAATACAATGAAACAATA]

[+] EMBL BM629913             [CCGCCGGTAACTACTTACAGTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTTTTTATGTGAATGGCCCAGTTTTTCCCTTAAACATACCCACACACACACACTCACACACGCGCGCACCCAATAATTGTATGACACGATTGTAAGAGTTAGAGGGGTAAATTAGAATACAAAATAGACAAAAAGGGGAAAACTCTCATCGGATGTCTTTGCAGCGTGCTTTTTGCTCGAACATAATAATAAAAAATAAAACAAAAAAAAAACAACACAAATCCAAATCCACAGAAACAGGGGGAGAGTGAAGAATAGTTAATGCAAAATATACCTTTCCTAATCCATTCAATTTAAAAATCAAAAAACAAACACGTACAAGTTTTTCTCGAATAAACAAAAAACAACAATAAACAAAGTAATAATCTCAACTCATGAACAAAGTCCAGCTAACAATAATAGCAGAGCGCCAAAAGGATAAAAGAAACTAAACAAAACTGTACCAATACAATGAAACAATA]




>consensus_60#1
CCGCCGGTAACTACTTACAGTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTT
TTTATGTGAATGGCCCAGTTTTTCCCTTAAACATACCCACACACACACACTCACACACGC
GCGCACCCAATAATTGTATGACACGATTGTAAGAGTTAGAGGGGTAAATTAGAATACAAA
ATAGACAAAAAGGGGAAAACTCTCATCGGATGTCTTTGCAGCGTGCTTTTTGCTCGAACA
TAATAATAAAAAATAAAACAAAAAAAAAACAACACAAATCCAAATCCACAGAAACAGGGG
GAGAGTGAAGAATAGTTAATGCAAAATATACCTTTCCTAATCCATTCAATTTAAAAATCA
AAAAACAAACACGTACAAGTTTTTCTCGAATAAACAAAAAACAACAATAAACAAAGTAAT
AATCTCAACTCATGAACAAAGTCCAGCTAACAATAATAGCAGAGCGCCAAAAGGATAAAA
GAAACTAAACAAAACTGTACCAATACAATGAAACAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_60#0      GAAATGATAAGATCGCGATAGTAAGTTATTGTTTAAGGCAAAACGAAGGAGATTTTTGGG 60
consensus_60#1      ------------------------------------------------------------
                                                                                

consensus_60#0      AAATTTAATAATCCTGCCACTGTCGGAGAAAAAACACACACGCAAACTAACACTTTCCTA 120
consensus_60#1      ------------------------------------------------------------
                                                                                

consensus_60#0      AACCGTAACACCGTGCAGTGGCTAAACATTCATTTGCTTCTTTCGTGCCTCCCGGTAACT 180
consensus_60#1      ------------------------------------------------CCGCCGGTAACT 12
                                                                    *  *********

consensus_60#0      ACTTACATTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTTTTTTATGTGAAT 240
consensus_60#1      ACTTACAGTTTAATTGTTTTTGCTCGCCCTCTACTTAACTGGTGCTTTTTT-ATGTGAAT 71
                    ******* ******************************************* ********

consensus_60#0      GGCCCAGTTTTTCCCTTAAACATACCCACACACACACACACTCACACACGCGCGCACCCA 300
consensus_60#1      GGCCCAGTTTTTCCCTTAAACATACCCACACACACACAC--TCACACACGCGCGCACCCA 129
                    ***************************************  *******************

consensus_60#0      ATAATTGTATGACACGATTGTAAGAGTTAGAGGGGTTGAATTAGAATACAAAATAGA--- 357
consensus_60#1      ATAATTGTATGACACGATTGTAAGAGTTAGAGGGGT-AAATTAGAATACAAAATAGACAA 188
                    ************************************  *******************   

consensus_60#0      ------AGAACCTCTACTTAAATG----------GTGCTTTTTGCTCGAAAATAATGATA 401
consensus_60#1      AAAGGGGAAAACTCTCATCGGATGTCTTTGCAGCGTGCTTTTTGCTCGAACATAATAATA 248
                            ** ****  *   ***          **************** ***** ***

consensus_60#0      AAACAAAATAAAACAAAAAAAAA-CATCACAAATCCAAATCCACAGAAACAGGAAGGAGT 460
consensus_60#1      AAA---AATAAAACAAAAAAAAAACAACACAAATCCAAATCCACAGAAACAGGG-GGAGA 304
                    ***   ***************** ** **************************  **** 

consensus_60#0      TTTAAGAATAGTTAATGCAAAATATACCTTTCCAAATCCATTCAATTTAAAAA-CAAAAA 519
consensus_60#1      GTGAAGAATAGTTAATGCAAAATATACCTTTCCTAATCCATTCAATTTAAAAATCAAAAA 364
                     * ****************************** ******************* ******

consensus_60#0      ACAAACACGTACAAGTTTTTTCTCGAACAAACAATAAAAACAACGACAATAAACAACCTA 579
consensus_60#1      ACAAACACGTACAAGTTTTT-CTCGAATAAACAAAAAA-----CAACAATAAACAAAGTA 418
                    ******************** ****** ****** ***     * ***********  **

consensus_60#0      ATAA-------------------------------------------------------- 583
consensus_60#1      ATAATCTCAACTCATGAACAAAGTCCAGCTAACAATAATAGCAGAGCGCCAAAAGGATAA 478
                    ****                                                        

consensus_60#0      ----------------------------------------
consensus_60#1      AAGAAACTAAACAAAACTGTACCAATACAATGAAACAATA 518