cluster # 6006

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Anopheles gambiae
cluster # 6006 cluster # 6006 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6006#0 length = 609 sequences # 4

consensus_6006#1 length = 354 sequences # 1

consensusID : consensus_6006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 609
fasta sequence

                              [CCGGGATCGCATAGAAGCGCACACGAAAAAATTGGACGATGGAAAACGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGTAAGTGT-GTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAGTAA-TTCACCGTAATAAATATCTA]

[+] EMBL BM646194             [CCGGGATCGCATAGAAGCGCACACGAAAAAATTGGACGATGGAAAACGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGTAAGTGTGGTGTGTGGAAGTATCCCGGTGTATGTACATTTC                                        ]
[+] EMBL BX626940             [                                     GATGGAAAACGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGTAAGTGT GTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAGTAA TTCACCGTAATAAATATCTA]
[+] EMBL BM635360             [                                                          ccgGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGACGACGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGT AG GT GTGTGTGGAAGTGTCCCGGTGTATGTACATTTCGTGTTATTAGTTTCAGTAATTTCAC               ]
[-] EMBL CNS08W5Q             [                                                                                                                                                                                                                                                                 GCCACCGTGCAGGTGGAGAATGCGGTCGAAGACGACGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGTTGCTCCAGAAGCGTAAGACGGAGCTGTAAATGT GTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAGTAA TTCACCGTAATAA       ]




>consensus_6006#0
CCGGGATCGCATAGAAGCGCACACGAAAAAATTGGACGATGGAAAACGCCTCCAAGGAGG
AGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACG
TTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACA
CGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACA
AACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGATGTCGCGGACC
CCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCC
GTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGG
AACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGA
GCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGTAAGTGTGTG
TGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAGTAATTCACCGTAAT
AAATATCTA

consensusID : consensus_6006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [TCCGTCTGCTGCCGTTCTGTTTACGGGGATTGCACACGAAAAATTGGACGATGGAAAACGCCTCCAAGGAGCAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGAATGCGGTCGAAGAGACGCGGACCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCG]

[+] EMBL CNS08W5P             [TCCGTCTGCTGCCGTTCTGTTTACGGGGATTGCACACGAAAAATTGGACGATGGAAAACGCCTCCAAGGAGCAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGAATGCGGTCGAAGAGACGCGGACCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCG]




>consensus_6006#1
TCCGTCTGCTGCCGTTCTGTTTACGGGGATTGCACACGAAAAATTGGACGATGGAAAACG
CCTCCAAGGAGCAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGA
TCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGG
AGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGA
CGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGAATGCGGTCGAAG
AGACGCGGACCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6006#0      --------------CCGGGATCGCATAGAAGCGCACACGAAAAAATTGGACGATGGAAAA 46
consensus_6006#1      TCCGTCTGCTGCCGTTCTGTTTACG-GGGATTGCACACGAAAAA-TTGGACGATGGAAAA 58
                                        * *  *   * *  ************ ***************

consensus_6006#0      CGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCT 106
consensus_6006#1      CGCCTCCAAGGAGCAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCT 118
                      ************* **********************************************

consensus_6006#0      GATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGAT 166
consensus_6006#1      GATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGAT 178
                      ************************************************************

consensus_6006#0      GGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCC 226
consensus_6006#1      GGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCC 238
                      ************************************************************

consensus_6006#0      GACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGA 286
consensus_6006#1      GACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGAATGCGGTCGA 298
                      ************************************************* * ********

consensus_6006#0      AGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGA 346
consensus_6006#1      AGA-GACGCGGACCC-ATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCG-- 354
                      *** * ********* ******************************************  

consensus_6006#0      GGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCT 406
consensus_6006#1      ------------------------------------------------------------
                                                                                  

consensus_6006#0      GAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGT 466
consensus_6006#1      ------------------------------------------------------------
                                                                                  

consensus_6006#0      GCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGA 526
consensus_6006#1      ------------------------------------------------------------
                                                                                  

consensus_6006#0      GCTGTAAGTGTGTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAG 586
consensus_6006#1      ------------------------------------------------------------
                                                                                  

consensus_6006#0      TAATTCACCGTAATAAATATCTA 609
consensus_6006#1      -----------------------