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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 914 fasta sequence
[CCGCAAGCGGCCTGGTGTCGTCACATTCTAGGAGGTCATCAAAGTGTTATTACAACAAAGTTGAGCTTTACTGCATCGATCCCGTTAAAGCAGTGGCGGATGCGTGGTGGCCAGAAATAGTTACCGAAATAGCGGAGGAACGATTGTTTGGATACCACGCGTGGGTTGGTATCGAAAGCGAAAACTAAGCAGTGTGTGTAGGTTGCAGCAGTGTGATTCAACTAAATGCACCACACCACCGCAAACACGCACGCCGCCATCCCACGCAAGCGCATTCACAGCACACCGAGCGCATCACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTAC-AAACTTGGTTCCAATTCAGTGTGCACCGGTTCGTGACCCATATCGAATCGAACGAAAAACAGCCAATTTGAAGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAACCACAACAACGGAACAGCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGATAATTGGTACGGCAATGGGACGAAAGGAACGGCCGATGTGCAACCGCACCAGCGTCCCCGAAGGCTATCGTTCAACGGGTCCGATATGGAGCTTTCCGACCTGAAGGGTGTTCAGGGAGCCGCATCCGATCGGGAGAAGAATGCCATCGACACGAAGCAAACGCTGATCTTGCTGGCCGTCGCCACAACGCTTGCGGTTTCCATCAAATATCTGCTTCCGTCCTTCGATCTGGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGC]
[+] EMBL BM602888 [CCGCAAGCGGCCTGGTGTCGTCACATTCTAGGAGGTCATCAAAGTGTTATTACAACAAAGTTGAGCTTTACTGCATCGATCCCGTTAAAGCAGTGGCGGATGCGTGGTGGCCAGAAATAGTTACCGAAATAGCGGAGGAACGATTGTTTGGATACCACGCGTGGGTTGGTATCGAAAGCGAAAACTAAGCAGTGTGTGTAGGTTGCAGCAGTGTGATTCAACTAAATGCACCACACCACCGCAAACACGCACGCCGCCATCCCACGCAAGCGCATTCACAGCACACCGAGCGCATCACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTAC AAACTTGGTTCCAATTCAGTGTGCACCGGTTCGTGACCCATATCGAATCGAACGAAAAACAGCCAATTTGAAGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAACCACAACAACGGAACAGCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGATAATTGGTACGGCAATGGGACGAAAGGAACGGCCGATGTGCAACCGCACCAGCGTCCC ]
[+] EMBL BM577298 [ ccgCACCGCAAACACGCACGCCGTCATCCCACGCAAGCGCATTCACAGCACACCGAGCGCATTACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTACGAAAATT GTTCCAATTCAGTGTGCACCGGTTCGTGACCCATATCGTATCGAACGAAAAACAGCCAATTTGAAGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAATCACAACAACGGAACAGCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGAAAAATGGTACGGCAATGGGACGAAAGGAACGGCCAATGTGCAACCGCACCAGCGTCCCCGAAGGCTATCGTTCAACGGGTCCGATATGGAGCTTTCCGACCTGAAGGGTGTTCAGGGAGCCGCATCCGATCGGGAGAAGAATGCCATCGACACGAAGCAAACGCTGATCTTGCTGGCCGTCGCCACAACGCTTGCGGTTTCCATCAAATATCTGCTTCCGTCCTTCGATCTGGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGC]
consensusID : consensus_6008#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 860 fasta sequence
[CCGAGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTCTCGGTACGTTCCGTTTAATACACGCCCTGGTGTTTTCTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCCAGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACCCGCGTCCGGCTGCCGATCTTCTCGTGGAAAATGGAAAACCTTCTCGAGCAGGCTGGTACGGTGTCGCATACGTTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTAGACAGCAGCATTCCGGGAGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAACGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCTCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGATAATAACGTCCCCATATAAAACAAAACGCCACACCCTGTGTGCCCGCTTCGTTCCGTAAAGTGCCTCCATGAGCTCTAGTATGAAACGCAGGGCAGCTACATATAATATTGCTTTCGCATTCCGGCAGATGATGTAAGGCGATGAGATTTTTTTGGAACTGTGCAATCCATTTACATCAACCATCGTGGCGTACACCGCATTACTCGTTTATCTTATTTATTTCTATCTATTTTTTTTACTAAATATTACCCTTTAACATTTCGTTCCTTTTTGCAACGAAAAACGGAAATAACGTGCGTATGTGAAGCTAAACTCGGGGTTTTATTTTAGTCTACGTTAGAAAAT]
[+] EMBL BM585556 [CCGAGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTCTCGGTACGTTCCGTTTAATACACGCCCTGGTGTTTTCTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCCAGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACCCGCGTCCGGCTGCCGATCTTCTCGTGGAAAATGGAAAACCTTCTCGAGCAGGCTGGTACGGTGTCGCATACGTTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTAGACAGCAGCATTCCGGGAGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAACGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCTCTGCTGAGCGGCGTGGTTGGATTC ]
[+] EMBL BX621993 [ AATAACCTCGGTTTCGGTACGTTCCGTTTAATACACGCCCTGGTGTTTTGTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCTCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACCCGTATCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTACGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTGGACAGCAGCATTCCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGATAATAACGTCCCCATATAAAACAAAACGCCACACCCTGTGTGCCCGCTTCGTTCCGTAAAGTGCCTCCATGAGCTCTAGTATGAAACGCAGGGCAGCTACATATAATATTGCTTTCGCATTCCGGCAGATGATGTAAGGCGATGAGATTTTTTTGGAACTGTGCAATCCATTTACATCAACCATCGTGGCGTACACCGCATTACTCGTTTATCTTATTTATTTCTATCTATTTTTTTTACTAAATATTACCCTTTAACATTTCGTTCCTTTTTGCAACGAAAAACGGAAATAACGTGCGTATGTGAAGCTAAACTCGGGGTTTTATTTTAGTCTACGTTAGAAAAT]
consensusID : consensus_6008#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[CCGCCCACGCGTCCGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTTTCGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTGGACAGCAGCATTCCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGAGTATAACGTCCCCATATAAAACAAAACGCCAAACCCTGTGTGCCCGCATCGCTCCGTAAAGT]
[+] EMBL BM644556 [CCGCCCACGCGTCCGGTTGCATGTGTAGTCATCTAATCTTGTGCCTTTATAAATAACCTCGGTTTCGAATCATACCGAACGATCGGTTCCCGAGTCGTCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGCTGTATGCGGTCGCTTTCGGGCTGCTGCTTTCGTCGTTTACCTGGTACATCATCTACCTGGACAGCAGCATTCCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCGAAGAAGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTTCACCTACCCTACATAACGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTAGGGCACGCATCGTGGACCATGGAGTATAACGTCCCCATATAAAACAAAACGCCAAACCCTGTGTGCCCGCATCGCTCCGTAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6008#1 -----------------------------CCGAGGTTGC--ATGTGTAGTCATC-TAATC 28
consensus_6008#2 ------------------------------------------------------------
consensus_6008#0 CCGCAAGCGGCCTGGTGTCGTCACATTCTAGGAGGTCATCAAAGTGTTATTACAACAAAG 60
consensus_6008#1 TTGTGCCTTTATAAAT-AACCTCGGTCTCGGTACGTTCCGTTTAATACACGCCCTGGTGT 87
consensus_6008#2 --------------CC-GCCCACGCGTCCGGTTGCATGTGTA-GTCATCTAATCTTGTGC 44
consensus_6008#0 TTGAGCTTTACTGCATCGATCCCGTTAAAGCAGTGGCGGATGCGTGGTGGCCAGAAATAG 120
* ** * * *
consensus_6008#1 TTTCTAAGATACGGCGAGCTTAATCCAATTTAATCATACCGATCGATCGGTTCCAGAGTC 147
consensus_6008#2 CTTTATAAATA-----ACCTCGGTT---TCGAATCATACCGAACGATCGGTTCCCGAGTC 96
consensus_6008#0 TTACCGAAATAGCGGAGGAACGATT-GTTTGGATACCACGCGTGGGTTGGTATCGAAAGC 179
* * *** * * ** ** * * *** * * *
consensus_6008#1 GTC------GCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACCCGGTGTACC-CGCGT 200
consensus_6008#2 GTC------GCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACC-CGTGT 149
consensus_6008#0 GAAAACTAAGCAGTG-TGTGTAGGTTGCAGCAGTGTGATTCAACTAAATGCACCACACCA 238
* ****** ** ** ** *** * *** ** *** *
consensus_6008#1 CCGGCTGCCGATCTTCTCGTGGAAAATGGAAAACCTTCTCGAGCAGGCTGGTACGGTGTC 260
consensus_6008#2 CCGGCTGCCGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTC 209
consensus_6008#0 CCGCAAACACGCACGCCGCCATCCCACGCAAGCGCATTCACAGCACACCG--AGCGCATC 296
*** * * * ** * * **** * * * **
consensus_6008#1 GCATACG--TTGTATGCGGTCGCTTTCGGGCTGCTGC--TTTCGTCGTTTACCTGGTACA 316
consensus_6008#2 GCATACG--CTGTATGCGGTCGCTTTCGGGCTGCTGC--TTTCGTCGTTTACCTGGTACA 265
consensus_6008#0 ACATACCGTTTGTGAGCGCGCGTGCTAGTGTTTGTGTATTTTTATTACAAACTTGGTTCC 356
***** *** *** ** * * * * ** *** * ** **** *
consensus_6008#1 TCATCTACCTAGACAGCAGCATT-CCGGGAGTGAATCCACCGACACCGTTTTCGGCCTCG 375
consensus_6008#2 TCATCTACCTGGACAGCAGCATT-CCGGGGGTGAATCCACCGACACCGTTTTCGGCCTCG 324
consensus_6008#0 AATTCAGTGTGCACCGGTTCGTGACCCATATCGAATCGAACGAAAA-ACAGCCAATTTGA 415
** * ** * * * ** ***** * *** * * *
consensus_6008#1 AAGA-AACGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTT-CACCTACCCTACA 433
consensus_6008#2 AAGA-AGCGCTACCGTGGTGGACCACCTAGCAAGGAACGCCGGTTT-CACCTACCCTACA 382
consensus_6008#0 AGTATAATGTCGTCTTCAATACACGTCGAGAGTGCGGCACAGAACCACAACAACGGAACA 475
* * * * * * * * ** * * * * ** * ** ***
consensus_6008#1 TAA--CGGCTCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTA 491
consensus_6008#2 TAA--CGGCCCTGCTGAGCGGCGTGGTTGGATTCTTAATTGTACTTCTCGTCAATGAGTA 440
consensus_6008#0 GCAGCCGGCGGCGGTACTATGCCCGTCGGGGCGGATAATTG-GTACGGCAATGGGACGAA 534
* **** * * ** * ** ****** * * *
consensus_6008#1 GGGCACGCATCGTGGACCATGGATAATAACGTCCCCATATAAAACAAAACGCCACACCCT 551
consensus_6008#2 GGGCACGCATCGTGGACCATGGAGTATAACGTCCCCATATAAAACAAAACGCCAAACCCT 500
consensus_6008#0 AGGAACGGCCGATGTGCAACCG-CACCAGCGTCCCCGAAGGCTATCGTTCAACGGGTCCG 593
** *** ** * * * * ******* * * * * **
consensus_6008#1 GTGTGCC-CGCTTCGTTCCGTAAAGTGCCTCCA----TGAGCTCTAGTATGAAACGCAGG 606
consensus_6008#2 GTGTGCC-CGCATCGCTCCGTAAAGT---------------------------------- 525
consensus_6008#0 ATATGGAGCTTTCCGACCTGAAGGGTGTTCAGGGAGCCGCATCCGATCGGGAGAAGAATG 653
* ** * ** * * * **
consensus_6008#1 GCAGCTACATATAATATTGCTTTCGCATTCCGGCAGATGATGTAAGGCGATGAGATTTTT 666
consensus_6008#2 ------------------------------------------------------------
consensus_6008#0 CCATCGACACGAAGCAAACGCTGATCTTGCTGGCCGTCGCCACAACGCTTGCGGTTTCCA 713
consensus_6008#1 TTGGAACTGTGCAATCCATTTAC-ATCAACCATCGTGGCGTACACCGCATTACTCGTTTA 725
consensus_6008#2 ------------------------------------------------------------
consensus_6008#0 TCAAATATCTGCTTCCGTCCTTCGATCTGGAATCATACCGAACGATCGGTTCCCGAGTCG 773
consensus_6008#1 TCTTATTTATTTCTA-TCTAT-------TTTTTTTACTAAATATTACCCTTTAACATTTC 777
consensus_6008#2 ------------------------------------------------------------
consensus_6008#0 TCGCAGTGGTGGATAATGTGTGGCAAGATTTCCTAACTCGGTGTACCCGTGTCCGGCTGC 833
consensus_6008#1 GTTCCTTTTTGCAACGAAAAACGGAAATAACGTGCGTATGTGAAGCTAAACTCGGGGTTT 837
consensus_6008#2 ------------------------------------------------------------
consensus_6008#0 CGACCTTTTCGTGGAAGATGGAAAACCTTCTCCAGCAGGCTGGTGCGGTGTCGCATACGC 893
consensus_6008#1 TATTTTAGTCTACGTTAGAAAAT 860
consensus_6008#2 -----------------------
consensus_6008#0 TGTATGCGGTCGCTTTCGGGC-- 914
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||