|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6011#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1028 fasta sequence
[GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGATGAGATTAAGTTC-CGATGGCGGGCGGCGGCGGTTC-GAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCG-CTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCG-GCGGTCGACTATCATCGGGC-GGGGGCCTCCGGCTAGC-ACACCCACCGACGGTGCGCCCAGCGAGGGCCGCCGTCTGTCGCACAGCAAATCGTGGCGAAAGGGACCGAGAACGAGAACTACATGGTGCCGCATCGCCCGTCCCATCAGCGAAGAGCTGCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGGTGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCACAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGCAGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGGCCGCGA-CGAAGCTGGGCCGTACGCCGAGCGACACCGGCGG-CCGACACCGCACCTTGTCACCTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGGCTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGGGGATTTTTTGTGTTG-TTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTATACAAAGCGAAAACCAACGAAATAAAGATATATTTCTGTGTGTGCGT]
[+] EMBL AGA281227 [GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGATGAGATTAAGTTCTCGATGGCGGGCGGCGGCGGTTC GAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCG CTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCG GCGGTCGACTATCATCGGGCGGGGGGCCTCCGGCTAGC ACACCCACCGACGGTGCGCCCAGCGAGGGCCGCCGT ]
[+] EMBL AL692231 [ c gaggttaGGGCGGCGGCGGTTCTGAACGGTGGGTACGCCGTGGTACGACCGCAAAGCCTCTCGTCTCAGCATGAACAGCATGGGTAGCGATAATTCCGAGCAGAGCAGCGNGCGGTCGACTATCATCGGGC GGGGGCCTCCGGCTATCTACACCCACGGACGGTGCGCCCAGCGAGGGCCGACGTCTGTCGCACAGCAAATCGTGGCGAAAGGGACCGAGAACGAGAACTACATGGTGCCGCATCGCCCGTCCCATCAGCGAAGAGCTGCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGGTGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCACAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGCAGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGGCCGCGA CGAAGCTGGGCCGTACGCCGAGCGACACCGGCGG CCGAC ]
[-] EMBL AGA282284 [ AATCGC CTTACGTAATGTATCCCTCGAATGTGCCGGTGTT TGCGGGCGG TGCAGAGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGG CGCGACCGAAGCTGGGCCGTACGCCGAGCGACACCGGCGGCCCGACACCGCACCTTGTCACCTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGGCTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGGGGATTTTTTGTGTTG TTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCT ]
[-] EMBL AGA282849 [ TCGTGCTCTCGGGATGGGGGGGATATTTTGTGTTGTTTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAACGACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGTGTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTATACAAAGCGAAAACCAACGAAATAAAGATATATTTCTGTGTGTGCGT]
consensusID : consensus_6011#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 973 fasta sequence
[GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTACGACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGAGCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGTGACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTGGCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCATCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAGGACAAAGATNAGGGGAACAGCGTACAGNTACAGGGTTGGCAGCTATAAAAACCCCGGCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAAGNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCCAATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCACCCGGAGGNGTCNTACCCGCATTGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGGAGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTGGCTTACANCNTTAAACAGGGGTNTAACACATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTTTGACACCCAGGGGGGATTGGGATTTATCATGGGACCANTGTGGCGGCCAGGTGGGCGTGTGCCCATGTGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTATGTCACACTGCGTAGACAGGAGTGGGCAGGGCACTTAGCAATCGGGCCCAACCAACCGAAAACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGCCGTGAAGGC]
[+] EMBL AL692270 [GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTACGACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGAGCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGTGACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTGGCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCATCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAGGACAAAGATNAGGGGAACAGCGTACAGNTACAGGGTTGGCAGCTATAAAAACCCCGGCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAAGNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCCAATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCACCCGGAGGNGTCNTACCCGCATTGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGGAGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTGGCTTACANCNTTAAACAGGGGTNTAACACATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTTTGACACCCAGGGGGGATTGGGATTTATCATGGGACCANTGTGGCGGCCAGGTGGGCGTGTGCCCATGTGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTATGTCACACTGCGTAGACAGGAGTGGGCAGGGCACTTAGCAATCGGGCCCAACCAACCGAAAACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGCCGTGAAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6011#0 GCGGGCAGGGAATGGGTCGGCCGGTGGTGCGAGCGACCCGCCCGGTGCGGACGTGTGCGA 60
consensus_6011#1 ------------------------------------------------------------
consensus_6011#0 TGAGATTAAGTTCCGATG-GCGGGCGGCGGCGGTTC-GAACGGTGGGTACGCCGTGGTAC 118
consensus_6011#1 --------------GAGGTATNTGCGGCGGCGGTTCTGAACGGTGGGTACTCCGTGNTAC 46
** * ************* ************* ***** ***
consensus_6011#0 GACCGCAAAGCCTCTCG-CTCAG-CATGAACAGCATGG-GTAGCGATAATTCCGAGCAGA 175
consensus_6011#1 GACCGCAAAGCCTCTCGTCTCAGACATGAACAGCATTGTGTAGCGATAATTCCGAGCAGA 106
***************** ***** ************ * *********************
consensus_6011#0 GCAGCGG--CGGTCGACTATCATCGGGCGGGGG---CCTCCGGCTAGC-ACACCCACCG- 228
consensus_6011#1 GCAGCTGTGCGGTCGACTATCATCGGGCGGANGTGGCCTCCGGCTATCTACACCCACTGT 166
***** * ********************* * ********** * ******** *
consensus_6011#0 -ACGGTGCGC---CCAGCGAGGGC-----CGCCGTCTG--TCGCACAGC-AAATC-GTGG 275
consensus_6011#1 GACTGTGTGCTGCCCAGCTGAGGTGCCTGCACTGTCTTGTCNGCACAGCTAAATCTGTTG 226
** *** ** ***** ** * * **** ******* ***** ** *
consensus_6011#0 ---CGAAAG-GGACCG-AGAAC-GAGAACTACAT-GGTGCC-GCATCG---CCCGTCCCA 324
consensus_6011#1 GCCCGAAAGTGGACCGCAGAACTGAGAACTACATTGGTGCCTGCATCTGCCCCTGTCCCA 286
****** ****** ***** *********** ****** ***** ** ******
consensus_6011#0 TCAGC-GAAGAGCT-GCACCTGGTGCGGGGCGTGCGGCTGGGCAGTGGGACGCTCGTCGG 382
consensus_6011#1 TCAGCTGAAGAGCTTGCACCTGGTNGCCAGAGGGGACCGTTATAGCACGCGGCTTGTGAG 346
***** ******** ********* * * * * ** * *** ** *
consensus_6011#0 TGCGCTTAACCGCTGCAGCAACGGTAGCTGCTCCAGTGACTGGCAGCAGCCACAGAACCA 442
consensus_6011#1 GACAAA-GATNAGGGGAACAGCG--TACAGNTACAG-GGTTGGCAGCTATAAAAACCCCG 402
* * * * ** ** * * * *** * ******* * * **
consensus_6011#0 CAGCAGCACAGCAGCAGCAGCAGAGCAACAGTGCCGGCTCGTGGGCCGGCATGGGAAAGC 502
consensus_6011#1 GCTTNGACCATGGGCCAACCCGGGTTAGGACTTTGTNTTCCCCAAGGACCATTGGGCCAA 462
* ** ** * * * * * ** *** **
consensus_6011#0 AGGAATCGCTACTACGTAATGTATCCCTCGAATGTGCCGGTGTTATGCGGGCGGCTGCAG 562
consensus_6011#1 GNNAAAGCCAACAAGGGAAAACACCAAACGAAAGGACCAAAGGGGCACCAACAAAAGGCC 522
** * ** * * ** * * **** * ** * * * *
consensus_6011#0 AGTACATGAACGTGCCGGCGGCGGTGACGCACCACACCAAAGAGGATGAGCGGATGACGG 622
consensus_6011#1 AATAGGCACAAGNGNCGAAGGCCACTGGATCACAGGACAAAAGCCANAGGTTTGGGGCCA 582
* ** * * * ** *** ** **** * * * *
consensus_6011#0 CCGCGACGAAGCTGGGCCGTACGCCGAGCGACACCGGCGGCCGACACCGCACCTTGTCAC 682
consensus_6011#1 CCCGGAGGNGTCNTACCCGCAT--TGGTGGGGACCCCCGGGNGAGCGCNNANTTTGGGGG 640
** ** * * *** * * * *** *** ** * * ***
consensus_6011#0 CTTCCAGTCGATAATGGAGTGCAATGAAAGTGCCGACAGTGTCGACAGTGTCACCTAGGG 742
consensus_6011#1 AGTGTAACAACCAACGGGNCANTGTGGGCAAACTTACTG-GCTTACANCNTTAAACAGGG 699
* * ** ** ** * ** * * *** * * ****
consensus_6011#0 CTGGAGCGAGGCTCTAATGCCCTTCTTCCGGGAAACGCTCTCGTGCTCTCGGGATGGGGG 802
consensus_6011#1 GTNTAACA----CATGGGGTTATAGTTTCNCCGCCCGATCCCGCNAAACATGTTTGGGTT 755
* * * * * * ** * ** ** ** * ****
consensus_6011#0 GGATTTTTTGTGTTGTTTTTTTTTTCTCGGGGAGGGTTTAAGAGGCGACGTTCCAGCAAC 862
consensus_6011#1 TGACACCCAGGGGGGATTGGGATTTATCATG--GGACCANTGTGGCGGC----CAGGTGG 809
** * * * ** *** ** * ** * **** * ***
consensus_6011#0 GACCGTTCTCATCGTATTATCCAAAGGTTAATTGAAATGATACCATATCCGCATGTAAGT 922
consensus_6011#1 GCGTGTGCCCATG----TGAAGGGGAGTTAACCCACATTATGAAAAACCGGGNTAT--GT 863
* ** * *** * ***** * ** ** * * * * * * **
consensus_6011#0 GTGTGTGCGTGAGCGTGTGTTGGTGTAGCACGCACATCAGTCTATAGGAAGCAGCTGTAT 982
consensus_6011#1 CACACTGCGTAGACAGGAGTGGG--CAGGGCACTTAGCAATCGGGCCCAACCAACCGAAA 921
***** * * ** ** ** * * * ** ** ** ** * * *
consensus_6011#0 ACAAAGCGAAAACCAACGAAA-TAAAGATATATTTCTGTGTGTGCGT------ 1028
consensus_6011#1 ACAAAAANCCANATAACAAAAGCACAGTGGTANATTTGAATGC-CGTGAAGGC 973
***** * *** *** * ** ** * ** ** ***
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||