These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6023#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 993 fasta sequence [CAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGCTGCTATTATTTTTG-TTGTTTGGTGTATGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTTCCGACGGCATCACCTCCGTCACCCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTAACGCTACTGTACGAGGCAGCCGAACCGGGATCCGGCACCCGATCGCAGCTCGAGGCTGCACTGGTCGATCCGGACCTGAACCAAACGCGTGCCTTCTACACACAGTTCCTAGATGCATCGCAGCAAACGAACGGTGACTACGAGTTCGATATTGGCACAAAAATGTTCCTGGACAAGGCGCGCGCCAAGCTGCCTCAAGCGTACACTGACCTTCTGGAGCAAATGTACCGTACCTCGGTGGAGCGGGTATCGTTCAATGGCACAAAGGCGAC] [+] EMBL CNS08H33 [CAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGCTGCTATTATTTTTG TTGTTTGGTGTATGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTTCCGACGGCATCACCTCCGTCACCCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTAACG ] [+] EMBL CNS08Y1G [ GTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAG GTTTGAGGGGTTCTGCTGCTATTATTTTTGCTTGTTTGGTGTATGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAATTTAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCC TTCCGACGGCATCACCTCCGTCA CCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTAACGCTACTGTACGAGGCAGCCGAACCGGGATCCGGCACCCGATCGCAGCTCGAGGCTGCACTGGTCGATCCGGACCTGAACCAAACGCGTGCCTTCTACACACAGTTCCTAGATGCATCGCAGCAAACGAACGGTGACTACGAGTTCGATATTGGCACAAAAATGTTCCTGGACAAGGCGCGCGCCAAGCTGCCTCAAGCGTACACTGACCTTCTGGAGCAAATGTACCGTACCTCGGTGGAGCGGGTATCGTTCAATGGCACAAAGGCGAC] consensusID : consensus_6023#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CCGCCCACGCGTCCGGGCCAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGGGGTTTTCGCCGTTCTCCATC] [+] EMBL BM589381 [CCGCCCACGCGTCCGGGCCAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGGGGTTTTCGCCGTTCTCCATC] consensusID : consensus_6023#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGCGGACGCGTGGGCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTA] [+] EMBL BM657208 [CCGCGGACGCGTGGGCGCGTACAGCGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAGATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGAGGAGTGACTTTGACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGTGTTTTCGCCGTTCTCCATCAAACTTTTGCTA] consensusID : consensus_6023#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [CCCCCCCCCCCCATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGGGGAGTGACTTTCACTCGAATCTCGC] [+] EMBL CNS08FO7 [CCCCCCCCCCCCATCAAGGCCTATCAAGGTAGCACACCATCAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAGCTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCATCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCGCCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATAACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGATCGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGCCCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAACCTTCCGACGGCATCACCTCCGTCACCAGTCCTCCTTCGTGTCGGGGAGTGACTTTCACTCGAATCTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6023#0 ------------------CAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAG 42 consensus_6023#3 ------------------------------------------------------------ consensus_6023#1 CCGCCCACGCGTCCGGGCCAAGTCGTGCCGTCGCGACCATCCGTCCCCAGTCGCGTACAG 60 consensus_6023#2 ------------------------------------CCGCGGACGCGTGGGCGCGTACAG 24 consensus_6023#0 CGTTTGAGGGGTTCTGCTGCTATTATTTTTGTTGTTTGGTGTATGTGTGTATATTGTTAG 102 consensus_6023#3 ------------------------------------------------------------ consensus_6023#1 CGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAG 120 consensus_6023#2 CGTTTGAGGGGTTCTGTTGCTATTATTTTTGTTGTTTGGTGTGTGTGTGTATATTGTTAG 84 consensus_6023#0 ATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCAT 162 consensus_6023#3 --------------------CCCCCCCCCCCCATCAAGGCCTATCAAGGTAGCACACCAT 40 consensus_6023#1 ATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCAT 180 consensus_6023#2 ATTTGTTTTGTGTGCGTTGCTGCGTTCTTCACATCAAGGCCTATCAAGGTAGCACACCAT 144 * * * ***************************** consensus_6023#0 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAG 222 consensus_6023#3 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGGAGTCGTTAGATCGTTCGTTTCCAG 100 consensus_6023#1 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAG 240 consensus_6023#2 CAAGGTCAAACGTGGCCTTAGCGCATCTTCCGCGGCAGTCGTTAGATCGTTCGTTTCCAG 204 *********************************** ************************ consensus_6023#0 CTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 282 consensus_6023#3 CTTTAGGCGTGCGACCTGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 160 consensus_6023#1 CTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 300 consensus_6023#2 CTTTAGGCGTGCGCCCAGGCAGTGAATTTTGTTTGTGTGTGCGTCGTTTGTATCTAACCA 264 ************* ** ******************************************* consensus_6023#0 TCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCG 342 consensus_6023#3 TCTAATACCCGTGACGCGGAGTGGCGGAATTTACGCACGATCACACACATCAACGCACCG 220 consensus_6023#1 TCTAATACCCGTGACGCGGAGTGGCGGAATTTAC-------------------------G 335 consensus_6023#2 TCTAATACCCGTGACGCGGAGTGGCGGAATTTAC-------------------------G 299 ********************************** * consensus_6023#0 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 402 consensus_6023#3 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 280 consensus_6023#1 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 395 consensus_6023#2 CCAATGGTGGCTGTGCTGTGCGTGTAAGGGCGTCCGTGTAAAAGCAACTGACCGTCAATA 359 ************************************************************ consensus_6023#0 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 462 consensus_6023#3 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 340 consensus_6023#1 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 455 consensus_6023#2 ACACAAGCGGTGCGAGAGAGCGTGCTCACCTTAATACCAGCCAAACAGCTGTCGGTGGAT 419 ************************************************************ consensus_6023#0 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGC 522 consensus_6023#3 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGTGAGATGCGGTCGGCGGTGC 400 consensus_6023#1 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGC 515 consensus_6023#2 CGGATTTGGAGATCCCGCTAGCGACGGACAGCTTCCCAAGCGAGATGCGGTCGGCGGTGC 479 **************************************** ******************* consensus_6023#0 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 582 consensus_6023#3 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 460 consensus_6023#1 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 575 consensus_6023#2 CCAATAGCGTCAGGTGCTATGCAGTCCTGATGCTACTGATTTCCATCGGTACGGTGCAAC 539 ************************************************************ consensus_6023#0 CCTTTCCGACGGCATCACCTCCGTCACCCAGTCCTCCTT-CGTGTCGAGGAGTGACTTTG 641 consensus_6023#3 C--TTCCGACGGCATCACCTCCGTCACC-AGTCCTCCTT-CGTGTCGGGGAGTGACTTTC 516 consensus_6023#1 CC-TTCCGACGGCATCACCTCCGTCACC-AGTCCTCCTTTCGTGTCGAGGAGTGACTTTG 633 consensus_6023#2 CC-TTCCGACGGCATCACCTCCGTCACC-AGTCCTCCTT-CGTGTCGAGGAGTGACTTTG 596 * ************************* ********** ******* *********** consensus_6023#0 ACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTTGTGTTTTCGCCGT 701 consensus_6023#3 ACTCGAATCTCGC----------------------------------------------- 529 consensus_6023#1 ACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGGGGTTTTCGCCG 693 consensus_6023#2 ACTGGAATCTCGCTCGTGAAGTGTTCCGGCACGAAGACTCAAATGTCGTG-TTTTCGCCG 655 *** ********* consensus_6023#0 TCTCCATCAAACTTTTGCTAACGCTACTGTACGAGGCAGCCGAACCGGGATCCGGCACCC 761 consensus_6023#3 ------------------------------------------------------------ consensus_6023#1 TTCTCCATC--------------------------------------------------- 702 consensus_6023#2 TTCTCCATCAAACTTTTGCTA--------------------------------------- 676 consensus_6023#0 GATCGCAGCTCGAGGCTGCACTGGTCGATCCGGACCTGAACCAAACGCGTGCCTTCTACA 821 consensus_6023#3 ------------------------------------------------------------ consensus_6023#1 ------------------------------------------------------------ consensus_6023#2 ------------------------------------------------------------ consensus_6023#0 CACAGTTCCTAGATGCATCGCAGCAAACGAACGGTGACTACGAGTTCGATATTGGCACAA 881 consensus_6023#3 ------------------------------------------------------------ consensus_6023#1 ------------------------------------------------------------ consensus_6023#2 ------------------------------------------------------------ consensus_6023#0 AAATGTTCCTGGACAAGGCGCGCGCCAAGCTGCCTCAAGCGTACACTGACCTTCTGGAGC 941 consensus_6023#3 ------------------------------------------------------------ consensus_6023#1 ------------------------------------------------------------ consensus_6023#2 ------------------------------------------------------------ consensus_6023#0 AAATGTACCGTACCTCGGTGGAGCGGGTATCGTTCAATGGCACAAAGGCGAC 993 consensus_6023#3 ---------------------------------------------------- consensus_6023#1 ---------------------------------------------------- consensus_6023#2 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||