cluster # 6028

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Anopheles gambiae
cluster # 6028 cluster # 6028 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6028#0 length = 682 sequences # 4

consensus_6028#1 length = 374 sequences # 1

consensusID : consensus_6028#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 682
fasta sequence

                              [CCGGTAACGGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCT-CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG-AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCAC-GGTGACGAAGGCCGCCGAGCCGGTCAAAGT-GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGATGCGG-AGGTGAGCGGTATCTTGAGC]

[+] EMBL BM595352             [CCGGTAACGGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTAACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCT CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCAC GGTGACGAAGGCCGCCGAACCGGTCAAAGT GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTTTCGGTGATAATGGACGATGCGG AGGTGA              ]
[+] EMBL BM608278             [       ccGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGTAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAAGGCTTCCCCGGCCCGCCGCGCTTCT CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCAC GGTGACGAAGGCCGCCGAGCCGGTCAAAGT GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGATGCGG AGGTGAGCGGTATCTTGAGC]
[+] EMBL BM580330             [            ccgTGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCTCCCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAGAAGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCACCACGGGTGACGAAGGCCGCCGAGCCGGTCAAAGTGGAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGATGCGGAAGGTGAGCGGTATCT     ]
[+] EMBL BM615130             [             ccgGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCGTAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGCTGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCT CCCGCCCGAAAGGCTTCGCCCGCCCGTAAAGCCTCCCCGGCGCGTAG AGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGGCACCACCGCTACCGCCGCGTCCAC                                                                                                                                                                                     ]




>consensus_6028#0
CCGGTAACGGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTA
GGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTG
CCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCG
TAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCAGCAAGCAGCAGTACCGCCGC
TGCCAAGGAAACCGCCCCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAAATC
CCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACCATC
GCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCTCCCGCCCGAAAGGCTTCGCCCGC
CCGTAAAGCCTCCCCGGCGCGTAGAGCTTCGCCGGGCAGAAAACCGAAGGCAGCAACCGG
CACCACCGCTACCGCCGCGTCCACCACGGTGACGAAGGCCGCCGAGCCGGTCAAAGTGAG
CCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACACGGT
GCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGATGC
GGAGGTGAGCGGTATCTTGAGC

consensusID : consensus_6028#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [CCGGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGGTAAGCGAACCAAATTCACGCCGGGGCGTGCGGACCTTTCGTGCGTATTTTATGGGCGGAAAATATTGTGTTTTGGAAGGTACGCGCATCGCGCCGTTTTTGTTTGTACGCGTAGCGCCACTCTCCCTCTCACGAGATACCGACGGCGCGCTTGGTTTGTTGTATCGCAGAGATCGTGCGGAGGGTGGTGTGTGTGTGTGTGCGTGCGTGTTGAGTGCGATGGGAAGGGAAGGGACGGCATTGTTTTCCGCGGCAAAAGTTTATGCTGTGTGCA]

[+] EMBL BM627239             [CCGGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGGTAAGCGAACCAAATTCACGCCGGGGCGTGCGGACCTTTCGTGCGTATTTTATGGGCGGAAAATATTGTGTTTTGGAAGGTACGCGCATCGCGCCGTTTTTGTTTGTACGCGTAGCGCCACTCTCCCTCTCACGAGATACCGACGGCGCGCTTGGTTTGTTGTATCGCAGAGATCGTGCGGAGGGTGGTGTGTGTGTGTGTGCGTGCGTGTTGAGTGCGATGGGAAGGGAAGGGACGGCATTGTTTTCCGCGGCAAAAGTTTATGCTGTGTGCA]




>consensus_6028#1
CCGGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTAGGTGTTCCAACGCAGCAAACGAGGT
CCAGCACAGTGACGAAAACATCCCGCCGCGTGGTGCCGAGGTAAGCGAACCAAATTCACG
CCGGGGCGTGCGGACCTTTCGTGCGTATTTTATGGGCGGAAAATATTGTGTTTTGGAAGG
TACGCGCATCGCGCCGTTTTTGTTTGTACGCGTAGCGCCACTCTCCCTCTCACGAGATAC
CGACGGCGCGCTTGGTTTGTTGTATCGCAGAGATCGTGCGGAGGGTGGTGTGTGTGTGTG
TGCGTGCGTGTTGAGTGCGATGGGAAGGGAAGGGACGGCATTGTTTTCCGCGGCAAAAGT
TTATGCTGTGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6028#0      CCGGTAACGGCGTCATGACGCTTGTGATGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTA 60
consensus_6028#1      -------------------------CCGGTGAGTGCGAGCTTCGAAAAGTGGTATTTTTA 35
                                                  ********************************

consensus_6028#0      GGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTG 120
consensus_6028#1      GGTGTTCCAACGCAGCAAACGAGGTCCAGCACAGTGACGAAAACATCCCGCCGCGTGGTG 95
                      ************************************************************

consensus_6028#0      CCGAGCTACATAACATTTAAAAAAAGAGCGCTAACGAGAGGTTTGAAACATGGATAGCCG 180
consensus_6028#1      CCGAGGTAAGCGA-----ACCAAATTCACGC---CGGGGCGTGCGGACCTTTCGTG--CG 145
                      ***** **    *     *  ***    ***   ** *  **  * * * *   *   **

consensus_6028#0      TAGCCGTGGTAAACGGCTGTCGACTGTGGTTACAGCGGCA-GCAAGCAGCAGTACCGCCG 239
consensus_6028#1      TA--TTTTATGGGCGGAAAAT-ATTGTGTTTTGGAAGGTACGCGCATCGCGCCGTTTTTG 202
                      **    *  *   ***      * **** **     ** * **     **         *

consensus_6028#0      CTGCCAAGGAAACCGCC--CCTGCCGCGAGCAACGTGGAGAAGAAGAAACCGGGCCGCAA 297
consensus_6028#1      TTTGTACGCGTAGCGCCACTCTCCCTCTCACGAGATACCGACGGCGCGCTTGGTTTGTTG 262
                       *   * *   * ****   ** ** *   * *  *   ** *  *     **   *   

consensus_6028#0      ATCCCTGGCCGTCACGGCTGCAGCGCGCAAACGGTCCGCATCGCCCCCGAAACGGAAACC 357
consensus_6028#1      TATCGCAGAGATCGTG--CGGAGGGTGGTGTGTGTGTGTGT-GCGTGCGTGTTGAGTGCG 319
                         *   *   **  *   * ** * *      **  *  * **   **    *    * 

consensus_6028#0      ATCGCCCGCTCGGAGAGCTTCCCCGGCCCGCCGCGCTTCTCCCGCCCGAAAGGCTTCGCC 417
consensus_6028#1      ATGGGA----AGGGAAG-------GGACGGCATTGTTTTCCGCGGC--AAAAGTTTATGC 366
                      ** *       **  **       ** * **   * **  * ** *  *** * **   *

consensus_6028#0      CGCCCGTAAAGCCTCCCCGGCGCGTAGAGCTTCGCCGGGCAGAAAACCGAAGGCAGCAAC 477
consensus_6028#1      TGTGTGCA---------------------------------------------------- 374
                       *   * *                                                    

consensus_6028#0      CGGCACCACCGCTACCGCCGCGTCCACCACGGTGACGAAGGCCGCCGAGCCGGTCAAAGT 537
consensus_6028#1      ------------------------------------------------------------
                                                                                  

consensus_6028#0      GAGCCCGGAGGAGCCGAGACGCTCGCAGCGCATCCGCGCGTCGGAGGAAAAGGTTGACAC 597
consensus_6028#1      ------------------------------------------------------------
                                                                                  

consensus_6028#0      GGTGCTGCAATCGCTGAAAAAGTCACCGGTCGACAAGCGCCTGTCGGTGATAATGGACGA 657
consensus_6028#1      ------------------------------------------------------------
                                                                                  

consensus_6028#0      TGCGGAGGTGAGCGGTATCTTGAGC 682
consensus_6028#1      -------------------------