These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6047#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1747 fasta sequence [CCGCTGCGCCCATGCCGGAAGTGACGAGTACGGAGGTCAATGCTAGCAACAGCAGCAGCACCACCACCACTACGACAAGCCCGGTGCCGCCTACGGCGACAGCAGCCACGGCAGTGTCAAGCTCCGCTTCATCACCGCCCCCGTTGGCGACGAAACCGGCCAAACCTCGAAAGCCAGTGCTCGAATAAGCGGCGGCAATGCGCCATTTATAATACGCCAATTTGCTCTTGAATCCTCTGGTCTGCGCTGGTCCATACGT-CCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAAGAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACACGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGAAGAAGGATTTTAAAATCAATGGCACACGATCGTTGTAGGGAACGGTGGGAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCCGGCACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTTTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGAAAAAAAACGTCGCGAAATGTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAACGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGTATCACCCATCCTATCCTATCCCTTTGTGTCTGGCAGGTTATATTATCCAAATTTGCCCCATGTCCCTTTTGATTTAGTAAGGTATATTACATAGTGGCAAATTATTCCTGTTGTATTTTCGACACTGTTTTCTTCTCTCCCTTTTTTGCGTACTACACTACTCTAAGAAGGAACGGGGGCGAATGGGTCGTTGCGCACGCTGGCTTCGTAGCTCCTGTAACGGACTGTTGAAAAAAAAAAACAAAACAAAAACGTTGTTACTACATTTAAGCTAGATGTGAGGATGATTGATTGCAAAACAGATCGTGTGTGCTAATGTGCGGGATGGCAAAAGGCACATGCAAAAAAATAACACATGCTCCTAACACGTATATGAATGAGACAGCAGTAGATACAGGTCTTCTGCTGTAAAGGCGGAATGAAGAAAATCGATTAAAAATTAACAAGCGGGACAATGTAAGCACTTGCACACGTGGTTATGTATGCCGTATTATGAACACAACTGAAACTGATTTAACAACAATTTAGGCAAACCTAGACAGAGGAGGGAGTGATAACAAACAGCAACAACAAAAACTATAAGAAGTATATATATATATTGAAAATAAACATGCTAAGTAT] [+] EMBL BM614357 [CCGCTGCGCCCATGCCGGAAGTGACGAGTACGGAGGTCAATGCTAGCAACAGCAGCAGCACCACCACCACTACGACAAGCCCGGTGCCGCCTACGGCGACAGCAGCCACGGCAGTGTCAAGCTCCGCTTCATCACCGCCCCCGTTGGCGACGAAACCGGCCAAACCTCGAAAGCCAGTGCTCGAATAAGCGGCGGCAATGCGCCATTTATAATACGCCAATTTGCTCTTGAATCCTCTGGTCTGCGCTGGTCCATACGT CCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAAGAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACACGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGAAGAAGGATTTTAAAATCAATGGCACACGATCGTTGTA ] [-] EMBL BM617719 [ CTCTTGAATCCTCTGGTCTGCGCTGGTCCATACGTCCCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAAGAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACACGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGAAGAAGGATTTTAAAATCAATGGCACACGATCGTTGTAGGGAACGGTGGGAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCCGG ] [+] EMBL BM628522 [ ccgGGGAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTTTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGAAAAAAAACGTCGCGAAATGTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAACGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGT ] [+] EMBL BX608739 [ CGCGAAATGTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAACGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGTATCACCCATCCTATCCTATCCCTTTGTGTCTGGCAGGTTATATTATCCAAATTTGCCCCATGTCCCTTTTGATTTAGTAAGGTATATTACATAGTGGCAAATTATTCCTGTTGTATTTTCGACACTGTTTTCTTCTCTCCCTTTTTTGCGTACTACACTACTCTAAGAAGGAACGGGGGCGAATGGGTCGTTGCGCACGCTGGCTTCGTAGCTCCTGTAACGGACTGTTGAAAAAAAAAAACAAAACAAAAACGTTGTTACTACATTTAAGCTAGATGTGAGGATGATTGATTGCAAAACAGATCGTGTGTGCTAATGTGCGGGATGGCAAAAGGCACATGCAAAAAAATAACACATGCTCCTAACACGTATATGAATGAGACAGCAGTAGATACAGGTCTTCTGCTGTAAAGGCGGAATGAAGAAAATCGATTAAAAATTAACAAGCGGGACAATGTAAGCACTTGCACACGTGGTTATGTATGCCGTATTATGAACACAACTGAAACTGATTTAACAACAATTTAGGCAAACCTAGACAGAGGAGGGAGTGATAACAAACAGCAACAACAAAAACTATAAGAAGTATATATATATATTGAAAATAAACATGCTAAGTAT] consensusID : consensus_6047#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [GAANTGCCCCCAGGATTTTTTTAAGGGCGAAGGAGAGCGAAAGCTACTGATACTACACACGAGCACAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATTCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGGAAGAAGGATTTTAAAATCAATGGCACACGATACGTTGTAGGGAACGGTGGGAAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTTGGTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTCTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGA] [+] EMBL AL693622 [GAANTGCCCCCAGGATTTTTTTAAGGGCGAAGGAGAGCGAAAGCTACTGATACTACACACGAGCACAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAAAAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTCTTATTTTCTGTTGTATAGGAAACAAATTATTCCCTTACTAAGAGTTGGGCAAGTTGAAAGCACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGGTTCGATAGGAAAGAGGGGAAGAAGGATTTTAAAATCAATGGCACACGATACGTTGTAGGGAACGGTGGGAAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTTGGTTTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACAATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTGCCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGATGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTCTATTTAGTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6047#0 CCGCTGCGCCCATGCCGGAAGTGACGAGTACGGAGGTCAATGCTAGCAACAGCAGCAGCA 60 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 CCACCACCACTACGACAAGCCCGGTGCCGCCTACGGCGACAGCAGCCACGGCAGTGTCAA 120 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 GCTCCGCTTCATCACCGCCCCCGTTGGCGACGAAACCGGCCAAACCTCGAAAGCCAGTGC 180 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 TCGAATAAGCGGCGGCAATGCGCCATTTATAATACGCCAATTTGCTCTTGAATCCTCTGG 240 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 TCTGCGCTGGTCCATACGTCCATGTTGCGCGCCGTTTTGGTGGTTCCGAGGCAAAAGTAA 300 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 GAAGCAATGGAGTTAGATGTTAAAGGGCGAAGGAGAGCGAAAGCTAGCTGATACTACACA 360 consensus_6047#1 GAANTGCCCCCAGGATTTTTTTAAGGGCGAAGGAGAGCGAAAGCTA-CTGATACTACACA 59 *** * * ** ************************ ************* consensus_6047#0 CGAGCACCAATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAA 420 consensus_6047#1 CGAGCAC-AATTGCAGGCACCAGGAGCACACGGGAGCGTTTGTGGAGGTGTGCAGGATAA 118 ******* **************************************************** consensus_6047#0 AAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTC 480 consensus_6047#1 AAGTGATGAATCAGACGTAAAGCGAGCGTGCGGTAGCATATATATATAACGAAATGTTTC 178 ************************************************************ consensus_6047#0 TTATTTTCTGTTGTATAGGAAACAAATTAT-CCCTTACTAAGAGTTGGGCAAGTTGAAAG 539 consensus_6047#1 TTATTTTCTGTTGTATAGGAAACAAATTATTCCCTTACTAAGAGTTGGGCAAGTTGAAAG 238 ****************************** ***************************** consensus_6047#0 CACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGG 599 consensus_6047#1 CACGCTCCGCACCCTTGGGTGAAAAAGAAATGTGCAACAATGCAGTTGCATACTCAGCGG 298 ************************************************************ consensus_6047#0 TTCGATAGGAAAGAGGG-AAGAAGGATTTTAAAATCAATGGCACACGAT-CGTTGTAGGG 657 consensus_6047#1 TTCGATAGGAAAGAGGGGAAGAAGGATTTTAAAATCAATGGCACACGATACGTTGTAGGG 358 ***************** ******************************* ********** consensus_6047#0 AACGGTGGGAA-GCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTGGTT 716 consensus_6047#1 AACGGTGGGAAAGCGCAAATCGCATGGCTAGCTGGGATGAATGAGCATACACTTTTTGGT 418 *********** ******************************************** * * consensus_6047#0 TTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACA 776 consensus_6047#1 TTGGTTGCTGTATGACAAAATCCACCCGTCCGAGGTGGTTTGAGCGAAATTTCATCGACA 478 ************************************************************ consensus_6047#0 ATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTG 836 consensus_6047#1 ATTTCGATGAGGCAAGCAGCAGCAGGCTGGGAAAGACACTTCAGTGCGAAATGATCGTTG 538 ************************************************************ consensus_6047#0 CCCACTCGGTTCGGTTCACTCACAGTTCCGGCACACACACAACCCTATCAAATTTATCGA 896 consensus_6047#1 CCCACTCGGTTCGGTTCACTCACAGTTCACACACACACACAACCCTATCAAATTTATCGA 598 **************************** ***************************** consensus_6047#0 TGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTTTATTTA 956 consensus_6047#1 TGGTTTACGGTTTTGAAAACATTGCAGATCAGCTGGACAGGGGCTGCTGCTTTCTATTTA 658 ***************************************************** ****** consensus_6047#0 GTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGAAAAAAAACGTCGCGAAAT 1016 consensus_6047#1 GTCAATTTTTGGCTGTACACGGGCACGAAATCGAATTTGTGA------------------ 700 ****************************************** consensus_6047#0 GTAGGTGTAAAGAGCTCTAGTAGCCGTGCGCAGTGTTATATCAGTTGCGTGCGGTCGAAA 1076 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 CGGAACGTTAATAATTACTTTGTAAGCTTTGCTAAACTAGGTTTTAAGGTATCACCCATC 1136 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 CTATCCTATCCCTTTGTGTCTGGCAGGTTATATTATCCAAATTTGCCCCATGTCCCTTTT 1196 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 GATTTAGTAAGGTATATTACATAGTGGCAAATTATTCCTGTTGTATTTTCGACACTGTTT 1256 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 TCTTCTCTCCCTTTTTTGCGTACTACACTACTCTAAGAAGGAACGGGGGCGAATGGGTCG 1316 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 TTGCGCACGCTGGCTTCGTAGCTCCTGTAACGGACTGTTGAAAAAAAAAAACAAAACAAA 1376 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 AACGTTGTTACTACATTTAAGCTAGATGTGAGGATGATTGATTGCAAAACAGATCGTGTG 1436 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 TGCTAATGTGCGGGATGGCAAAAGGCACATGCAAAAAAATAACACATGCTCCTAACACGT 1496 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 ATATGAATGAGACAGCAGTAGATACAGGTCTTCTGCTGTAAAGGCGGAATGAAGAAAATC 1556 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 GATTAAAAATTAACAAGCGGGACAATGTAAGCACTTGCACACGTGGTTATGTATGCCGTA 1616 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 TTATGAACACAACTGAAACTGATTTAACAACAATTTAGGCAAACCTAGACAGAGGAGGGA 1676 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 GTGATAACAAACAGCAACAACAAAAACTATAAGAAGTATATATATATATTGAAAATAAAC 1736 consensus_6047#1 ------------------------------------------------------------ consensus_6047#0 ATGCTAAGTAT 1747 consensus_6047#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||