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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1406 fasta sequence
[CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAGGCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTCTGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACATTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATATTGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATATTTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCC-AGGATATGGGAATACTAC-TCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACT---AAAAAACATATATAAATGCTATC-GGGTAAGACTATTCCT-AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAGTGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTTCCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTTAAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTTCTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATTTTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACNAAATGG]
[+] EMBL BM653789 [CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAGGCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTCTGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACATTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATATTGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATATTTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCC AGGATATGGGAATACTAC TCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGCACACACCGATCCGCATTGTCTGCGGACGATGATTTGGGCGATGGATTAAGTATTAACCAGGCACAGAAGGCGGTTTTTGCAAAACTGAAACGATACTGGc ]
[+] EMBL BX624336 [ cagaTATACCTATGATATGGGAATACTACNACGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACATATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTAGCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTGATCTAGCAGTAAACAATTCCTTTATTGCTACTTACGATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGANTCGCCAACACTCGTTCCTATATNCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGANATANGATATTACACT NAAAAACATATATAAATGCTATCGGGGTAGGACTATTCCTAAANTGAAG ]
[+] EMBL AGA285111 [ GATCGAACACTCCGATCCGCATTGTCTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTGCAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACT AAAAAACATATATAAATGCTATC GGGTAAGACTATTCCT AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAGTGAAAGCTAAGTCTACACACAAAGCC ]
[+] EMBL BX625289 [ ATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGTCTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATAAAACACTAAAAAAAAACATATATAAATGCTATC GGGTAAGACTATTCCT AAGTGAAGCAGAATCGAACGGTTCTGAGCAAACTGAAACACAGCGGATGTGTGTGAAAATGATTTTCTCTTATCATTTTGTAATCATTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTTACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCACTTGTGTGCTCGCAG CCCCCACACGTTTGCAAATGTTCAACATTTCAGGCGCAATACAGTGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTTCCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTTAAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTTCTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATTTTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACNAAATGG]
consensusID : consensus_6052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTATTGTCTGCTTGTAAAGAGTTTATAAAATCAGTGATTTTTTTAAGTTTAAGCCCTTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACAAAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAGAGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATATTCTGTGTACGTCGAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTACCTAAAGTGTGTACTAAAGCTATCGTGAATCTAATCTAGAAAGGCCATAGCAATGATGAGAATCGAATAAATCTATATAAATTTTAAAAAAAA]
[-] EMBL AGA283820 [TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTATTGTCTGCTTGTAAAGAGTTTATAAAATCAGTGATTTTTTTAAGTTTAAGCCCTTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAACAAAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAGAGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATATTCTGTGTACGTCGAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTACCTAAAGTGTGTACTAAAGCTATCGTGAATCTAATCTAGAAAGGCCATAGCAATGATGAGAATCGAATAAATCTATATAAATTTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6052#0 CCGATCCATTCTAAATGGAAAGCCGGATCGGGTGGGTACTGGCAGTTAGTTAGAAGTGAG 60
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 GCAATCATCGCAAGATTTCGTACCGCGTACGGGAATGAAACATTCCCGGGTAGTAATGTC 120
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 TGAATTAAGAACAAAACGGCAACGAACTGGTCTATGCACACTATTTCAATTTGCCATACA 180
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 TTGTACGTTGCAATTAACTGCAACACACAAACACACAAACTCTCTAGATTGTGTTTATAT 240
consensus_6052#1 -TTTAAGTTTTTTTTAAATATCCTTTTAAAAGCTTCAGTTCTTGCAGACTGATGTTTTAT 59
* ** *** **** * *** ** * *** ** ** ***
consensus_6052#0 TGTGCCGTACGTTTATCATTTGTCATACAGACAGAATCTTACTTTCTTTTAAAGAGATAT 300
consensus_6052#1 TGT-CTGCTTGTAAAGAGTTT---ATAAAATCAGTGATTTTTTTAAGTTTAA----GCCC 111
*** * * ** * *** *** * *** ** ** *****
consensus_6052#0 TTAGGCATTATGAAAATAGTGTATGTAGGCTACTATATTGATATAAAAGTATTCCAGGAT 360
consensus_6052#1 TTAAGTATCATTCATTTTTAGGATTACGAGAGCAGAACAGACGTTAGATTAAATTGTAAC 171
*** * ** ** * * * ** * * * ** * * * ** *
consensus_6052#0 ATGGGAATACTACTCGATACTCTAATTAAGGGCAATTGTTAGGAAAGATCACAAACAACA 420
consensus_6052#1 A---AAATGGAAGCGAACACTTGCATTAGTAGTAAGCGTATAGTAATTAAAGAAAGATAG 228
* *** * * *** **** * ** ** * ** * *** *
consensus_6052#0 TATATCTTAAAGCCTGTGATTATAATGGCGCAACCCGAGTGAGCGAACGATGGTACACTA 480
consensus_6052#1 AGAGAGTCAGTTTCAGTGAAGGTAACATAGTATGGTAAATATCCTGCTGGGGAAAAATAT 288
* * * **** *** * * * * * * * * *
consensus_6052#0 GCTGAACAAATTCTCATGCAAGTTTTGTGATTTTCCCCCCGAAAAGAATCAATTCACTTG 540
consensus_6052#1 TCTGTGTACGTC--GAAGCGACTACCATTGTCTGAAACGCGGAGAAGAACAATCTACTTA 346
*** * * * ** * * * * * * ** * * * **** ****
consensus_6052#0 ATCTAGCAGTAAACGATTCCTTCATTGCTACTTACGATCGAACACTCCGATCCGCATTGT 600
consensus_6052#1 CCTAAAGTGTGTACTAAAGCT--ATCGTGAATC-TAATCTAGAA----AGGCCATAGCAA 399
* ** ** * ** ** * * * *** * * ** *
consensus_6052#0 CTGCGGGGGATGATTCGGGCGATGGATTAAGTATTAACCAGGCAAACAAGACGGTTTTTG 660
consensus_6052#1 TGATGAGAATCGAATAAATCTATA---TAAATTTTAAAAAAAA----------------- 439
* * ** * * ** *** * **** *
consensus_6052#0 CAAAACTGAAACGATACTGGAATCGCCAACACTCGTTCCTATATTCAAAACACAGAAAGT 720
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 CTACTTTAGTCAGATCGGATGGAACACATGTTAGTAGGAAATAGGATATTACACTAAAAA 780
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 ACATATATAAATGCTATCGGGTAAGACTATTCCTAAGTGAAGCAGAATCGAACGGTTCTG 840
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 AGCAAACTGAAACACGGCGGATGTGTGTGAAAATGATTTTTTCTTATCATTTTGTAATCA 900
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 TTTTTTCCTACAAAACAAAAACCCTCCATTGTGTGAGGCTTATCACACATTTCTTCCTTT 960
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 ACTGTGGTGTAACACAACACACCAGCAGAAGTGATCTTTCGTTTTTCTCTCGCTCGCCCA 1020
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 CTTGTGTGCTCGCAGCCCCCCATACGTTTGCAAATGTTCAACATTTCAGGCGCAATATAG 1080
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 TGAAAGCTAAGTCTACACACAAAGCCTTTTAAAGGGTGCATTTTAGTTACGTTAGCTCTT 1140
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 CCTTTTTATTAGATGCGTTACACTGCGCCAAGTTTGCGGTTTAGTTTTCTCTAGTCCTTT 1200
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 AAGAGTGGACACATTTTATTTTAAGTTTTTTTTTTAAATATCTTTTTAAAAGCTTCAGTT 1260
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 CTTGCAGACTTATGTTTTATTGTCTGCTTCAATTGTAATGAGTTTATAAAATCAGTGATT 1320
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 TTTTTAAAAGTTTAAGCCCTTAAGTTTCATCCATTTTTAGGATTACGAGAGCAGAACAGA 1380
consensus_6052#1 ------------------------------------------------------------
consensus_6052#0 CGTTAGATTAAATTGTAACNAAATGG 1406
consensus_6052#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||