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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6057#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1563 fasta sequence
[CGAATGACACGATTGACTGAAAGTGAAAGAAAGCGATGCTTTCTTGCCAACAGTTAGTAGAAGACGAGGGAAAGAGGAAAATAAAACAAAACAGTATCACAATCGATGCAAAGATGCTGTTCGTACTTTAAGTAGCGGAGGTGGTGTGACAGTGTATACGCAAAACAGCAACAACTAAATTAGTACAAGTACAAGTAATGTGCGAGTGAACGAAAAAGAATGGAAAAAACCCAAGAATGCAGATATTGTACCTTAAAAACGTTAATTAGTAAATTCTTGTAATGACCACCGACAAGCACGAAGATGGACAAGACAGCGGTTACTAACTAGCGTTTTAATTTGACAATATCTGGTAGGCAGAGTTTCGTAAAAACAGCCATCGTTTTGTAAAGTGGGTTTTGGAGGTGGGTGCTGTCGGTGGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCACGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACAAAAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACTGTTTCGTGCGGCTTGTCGAACAAGACCCGGTCGGACCCGGGACCGGAGTGCACCAAGGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGCACCACACAATATATAGAGCAGCGAGTTTTTACGCCTCTTCTTTCCCGCTCACACTTATTTGCAGAATGGCGCGCACACGCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTACCGCACATGGGAAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGATTGACGCGGGTTGTCCTCTACGGGGAACAGGGGGAGGCCAGAGGGATAACGCGGGACCGGAGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATGGTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAAAGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCGGGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACGACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTC-CACCGCGGCCCAATCAACACAAAACCGATGAAATTGGAAAAATGGGACCAAAGCGATGATTATTTTTCGTCGACAGGGGCACT]
[+] EMBL CNS095QG [CGAATGACACGATTGACTGAAAGTGAAAGAAAGCGATGCTTTCTTGCCAACAGTTAGTAGAAGACGAGGGAAAGAGGAAAATAAAACAAAACAGTATCACAATCGATGCAAAGATGCTGTTCGTACTTTAAGTAGCGGAGGTGGTGTGACAGTGTATACGCAAAACAGCAACAACTAAATTAGTACAAGTACAAGTAATGTGCGAGTGAACGAAAAAGAATGGAAAAAACCCAAGAATGCAGATATTGTACCTTAAAAACGTTAATTAGTAAATTCTTGTAATGACCACCGACAAGCACGAAGATGGACAAGACAGCGGTTACTAACTAGCGTTTTAATTTGACAATATCTGGTAGGCAGAGTTTCGTAAAAACAGCCATCGTTTTGTAAAGTGGGTTTTGGAGGTGGGTGCTGTCGGTGGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCACGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACAAAAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACTGTTTCGTGCGGCTTGTCGAACAAGACCCGGTCGGACCCGGGACCGGAGTGCACCAAGGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGC ]
[-] EMBL CNS095QF [ GATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACTGTTTCGTGCGGCTTGTCGAACAAGACCCGGTCGGACCCGGGACCGGAGTGCACCAAGGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGCACCACACAATATATAGAGCAGCGAGTTTTTACGCCTCTTCTTTCCCGCTCACACTTATTTGCAGAATGGCGCGCACACGCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTACCGCACATGGGAAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGATTGACGCGGGTTGTCCTCTACGGGGAACAGGGGGAGGCCAGAGGGATAACGCGGGACCGGAGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATGGTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAAAGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCGGGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACGACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTC CACCGCGGC ]
[-] EMBL BM617328 [ GCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTCCCGCACATGGGAAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGATTGACGCGGGTTGTCCTCTACGGGGAACA GGGGAAGCCAGAGGGATAACGCGGGACCGGAGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATGGTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAAAGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCGGGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACGACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTCGCACCGCGAGCCAATCAACACAAAACCGATGAAATTGGAAAAATGGGACCAAAGCGATGATTATTTTTCGTCGACAGGGGCACT]
consensusID : consensus_6057#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence
[GGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCAGCGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACTCGAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGTTTTGTGTGTCTCACTTTCCGCCGGCGCCTTTTCCGGTTGGGTAGACACGCTCGACACCGGAAACCGATGTAAACTGACAAACGCGAGCGAGAACCTCGTCTGAACCGTCGTCTGTCTGCGCACGAAAACAAACTGCAGCACGCGGTTGCGTGTATTCCCGTCCGTTTTCGCGTTTGTCCCGGAACAACAAAAACTAATTGCTCTAACCACACGGTCAGTGAGAAAGAGTCACACACCGAGAGCTTGCGCACGCGCACCCGCTACTGCACTGGCGGCTCGTAATCAATCGGCTTTAC]
[-] EMBL BM638173 [GGTGCTTTCGCCCCAGAGACAAGCAGATTGCGCAGCGGAACGCGGTTTGCGGTTTAACCCTTACGGAAGCTTCCGGAAACGGAAAGCTACTCGAGAAGCTTTTCCTCCCTTCTGAACGGACTTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGTTTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGATAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCACACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTTTCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGTTTTGTGTGTCTCACTTTCCGCCGGCGCCTTTTCCGGTTGGGTAGACACGCTCGACACCGGAAACCGATGTAAACTGACAAACGCGAGCGAGAACCTCGTCTGAACCGTCGTCTGTCTGCGCACGAAAACAAACTGCAGCACGCGGTTGCGTGTATTCCCGTCCGTTTTCGCGTTTGTCCCGGAACAACAAAAACTAATTGCTCTAACCACACGGTCAGTGAGAAAGAGTCACACACCGAGAGCTTGCGCACGCGCACCCGCTACTGCACTGGCGGCTCGTAATCAATCGG ]
[-] EMBL CNS09L2S [ ACGGTCAGTGAGAAAGAGTCACACACCGAGAG TTGCGCACGCGCACCCGCTACTGCACTGGCGGCTCGTAATCAATCAGCTTTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6057#0 CGAATGACACGATTGACTGAAAGTGAAAGAAAGCGATGCTTTCTTGCCAACAGTTAGTAG 60
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 AAGACGAGGGAAAGAGGAAAATAAAACAAAACAGTATCACAATCGATGCAAAGATGCTGT 120
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 TCGTACTTTAAGTAGCGGAGGTGGTGTGACAGTGTATACGCAAAACAGCAACAACTAAAT 180
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 TAGTACAAGTACAAGTAATGTGCGAGTGAACGAAAAAGAATGGAAAAAACCCAAGAATGC 240
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 AGATATTGTACCTTAAAAACGTTAATTAGTAAATTCTTGTAATGACCACCGACAAGCACG 300
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 AAGATGGACAAGACAGCGGTTACTAACTAGCGTTTTAATTTGACAATATCTGGTAGGCAG 360
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 AGTTTCGTAAAAACAGCCATCGTTTTGTAAAGTGGGTTTTGGAGGTGGGTGCTGTCGGTG 420
consensus_6057#1 -----------------------------------------------------------G 1
*
consensus_6057#0 GTGCTTTCGCCCCAGAGACAAGCAGATTGCGCA-CGGAACGCGGTTTGCGGTTTAACCCT 479
consensus_6057#1 GTGCTTTCGCCCCAGAGACAAGCAGATTGCGCAGCGGAACGCGGTTTGCGGTTTAACCCT 61
********************************* **************************
consensus_6057#0 TACGGAAGCTTCCGGAAACGGAAAGCTACAAAAGAAGCTTTTCCTCCCTTCTGAACGGAC 539
consensus_6057#1 TACGGAAGCTTCCGGAAACGGAAAGCTACTCGAGAAGCTTTTCCTCCCTTCTGAACGGAC 121
***************************** ****************************
consensus_6057#0 TTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGT 599
consensus_6057#1 TTCCTACTAGACCACTAGATGCGTTGTGTTCCCAACGTGAACACCACTCCTGGCACCGGT 181
************************************************************
consensus_6057#0 TTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGA 659
consensus_6057#1 TTGTGATCGCTGGCTGCTAGAGCTGGTCTACTACTGATAAGGACTCTTTTGAAAAATTGA 241
************************************************************
consensus_6057#0 TAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCA 719
consensus_6057#1 TAGGATGCTTCCTTTTCTAATGGTAATTTCTCTCAGGACTTTCGTTAAGTATCGTCGTCA 301
************************************************************
consensus_6057#0 CACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTT 779
consensus_6057#1 CACGTTGTTGTTTCTGATTACACAATGTTTTGTCACTGCTTCAACGATCAATGCGAAGTT 361
************************************************************
consensus_6057#0 TCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGCTGACCACTTGTGGACACT 839
consensus_6057#1 TCACCGTTTGTTGTTGTGGCTTTGCAGATGTATGATCATTGTTTTGTGTGTCTCACTTTC 421
***************************************** * * *
consensus_6057#0 GTTTCGTGCGGCTT---GTCGAACAAGACCCGGTCGG-ACCCGGGACCGGAGTGCACCAA 895
consensus_6057#1 CGCCGGCGCCTTTTCCGGTTGGGTA-GACACGCTCGACACCGGAAACCGATGTAAACTGA 480
* ** ** ** * * *** ** *** *** * **** ** ** *
consensus_6057#0 GGGAATAATGCGGATTGTGCCGGGCAGCACCGATTTTTGCAGCACCACACAATATATAGA 955
consensus_6057#1 CAAACGCGAGCGAG--AACCTCGTCTGAACCGTCGTCTGTCTGCGCACG-AAAACAAACT 537
* *** * * * * **** * ** *** ** * * *
consensus_6057#0 GCAGCGAGTTTTTACGCCTCTTCTTTCCCGCTCACACTTAT-TTGCAGAATGGCGCGCAC 1014
consensus_6057#1 GCAGCACGCGGTTGCGTGTATTCCCGTCCGTTTTCGCGTTTGTCCCGGAACAACAAAAAC 597
***** * ** ** * *** *** * * * * * * * *** * **
consensus_6057#0 A---CGCGATACACACGCAGAGAGACGGAAAGAGATAGGGGAAAATGTACCGCACATGGG 1071
consensus_6057#1 TAATTGCTCTAACCACACGGTCAGTGAGAAAGAGTCACACACCGAGAGCTTGCGCACGCG 657
** ** *** * * ** ******* * * ** ** * *
consensus_6057#0 AAGTGATGATGATACACGCGGTCCGCTTTCTAGATGCACACACTTTCGCGATACACGGGA 1131
consensus_6057#1 CACCCGCTACTGCACTGGCGGCTCGTAATCAATCGGCTT-TAC----------------- 699
* * ** **** ** ** * ** **
consensus_6057#0 TTGACGCGGGTTGTCCTCTACGGGGAACAGGGGGAGGCCAGAGGGATAACGCGGGACCGG 1191
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 AGGTAGAAAGTGACCCCGGGAGAAGGTGCGTGTCGGTGGATGGTGGCGACCGGTCGGATG 1251
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 GTGGTTCCTCGTGTCCGTCTCGCGCGACCCGGTCGCAGAATTCACTGTCGCCGGAAGAAA 1311
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 AGTTGCGGGATCAACGGGGTACGGCGCACAGCACACGCAGGTGAAGGCAGCGAGGTTCCG 1371
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 GGATTTTCGCGTATCGATTACCCCGGGGCTGGTCGGTTTGTCCGGAAAGGATCTCGCACG 1431
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 ACGCTTCAGACAACAGTACGCCGAAGGTAAAAGAAAACACACACCCGTCCACCGCGGCCC 1491
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 AATCAACACAAAACCGATGAAATTGGAAAAATGGGACCAAAGCGATGATTATTTTTCGTC 1551
consensus_6057#1 ------------------------------------------------------------
consensus_6057#0 GACAGGGGCACT 1563
consensus_6057#1 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||