cluster # 6060

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Anopheles gambiae
cluster # 6060 cluster # 6060 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6060#0 length = 705 sequences # 4

consensus_6060#1 length = 618 sequences # 1

consensusID : consensus_6060#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 705
fasta sequence

                              [CCTACTGGAACGTGGTGCGATAGATTGGTTCAAACGAGATGATATCTTGACCAAAATGGCCAGCTCAAGTACGGTTCCGTTTGTTCCCATCAAAACCAAGGCTTCGATTGCGCTCAAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTGCAGAAAAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAGTCCGGGGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCGCGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTTCGGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGAAACTATCGGGAAATTCTGGAGGAAAAGAAGGCGGCCAAAGAGCAGGAAGAAGATACAGCCACGAAGAGAAGGCAAGGGCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAAGCAACGAAACCCGAACGCGATCATGAAGCATTATGGCATTGCAAAGCCTCGTATAGGGAAAAAATAAATAATTTGGGAAAACAAAAAAAAAAAAAAAAAAAAGGC]

[+] EMBL CNS092CA             [CCTACTGGAACGTGGTGCGATAGATTGGTTCAAACGAGATGATATCTTGACCAAAATGGCCAGCTCAAGTACGGTTCCGTTTGTTCCCATCAAAACCAAGGCTTCGATTGCGCTCAAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTGCAGAAAAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAGTCCGGGGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCGCGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTTCGGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGAAACTATCGGGAAATTCTGGAGGAAAAGAAGGCGGCCAAAGAGCAGGAAGAAGATACAGCCACGAAGAGAAGGCAAGGGCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAAGCAACGAAACCCGAACGCGATCATGAAGCATTATGGCATTGCAAAGCCTCGTATAGGGAAAAAATAAATAA                                  ]
[+] EMBL BX619185             [                                                  CCAAAATGGCCAGCTCAAGTA  GTTCCGTTTGTTCCCATAAAAACCAAGGCTTCGATTGCGCTCAAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTTGAGCCAAAGAAAGCGGCACTGCAGAAAAAGCGCTCCCGGCCACCACCGCCACCCAAGAAGGATGACAGTGAGAAGAACAAGTCTGACGACGACGACGACGACGATGAGGATGATATTGATGATATCTTTTCCGATGCGCCGCGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCAAACGTTCGGCTGGCCATCAAGCTGG                                                                                                                                                                                                                                                                               ]
[-] EMBL CNS092CB             [                                                                     TACGGTTCCGTTTGTTCCCATCANAACCAAGGCTTCGATTGCGCTCAAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTGCAGAAAAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAGTCCGGGGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCGCGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTTCGGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGAAACTATCGGGAAATTCTGGAGGAAAAGAAGGCGGCCAAAGAGCAGGAAGAAGATACAGCCACGAAGAGAAGGCAAGGGCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAAGCAACGAAACCCGAACGCGATCATGAAGCATTATGGCATTGCAAAGCCTCGTATAGGGAAAAAATAAATATTTTGGGAAAACAAAAAAAAAAAAAAAAAAAAGGC]
[-] EMBL CNS08IOI             [                                                                                                                                                                                                                                                                                                            AAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGCGGGTTTTACAAGGAAAGCAAACACCAGGCGAACGTTCGGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGAAACTATCGGGAAATTCTGGAGGAAAAGAAGGCGGCCAAAGAGCAGGAAGAAGATACGGCCACGAAGAGAAGGCAAGGGCCGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAAGCAACGAAACCCGAACGCGATCATGAAGCATTATGGCATTGCAAAGCCTCGTATAGGGAAAAAATAA                                      ]




>consensus_6060#0
CCTACTGGAACGTGGTGCGATAGATTGGTTCAAACGAGATGATATCTTGACCAAAATGGC
CAGCTCAAGTACGGTTCCGTTTGTTCCCATCAAAACCAAGGCTTCGATTGCGCTCAAGGA
CAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTGCAGAA
AAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAGTCCGG
GGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCGCGCAA
AAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACAT
CATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTTCGGCT
GGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGAAACTATCGGGAAATTCT
GGAGGAAAAGAAGGCGGCCAAAGAGCAGGAAGAAGATACAGCCACGAAGAGAAGGCAAGG
GCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAA
GCAACGAAACCCGAACGCGATCATGAAGCATTATGGCATTGCAAAGCCTCGTATAGGGAA
AAAATAAATAATTTGGGAAAACAAAAAAAAAAAAAAAAAAAAGGC

consensusID : consensus_6060#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CAGGCACGAGGACGAGTNTGATATCTCGACCAAAATGGCCAGCTCAAGTACGGTTCCGTTTGTTGCCCATCAAAACCAAGTGCTTCGATTGCGCTCAAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTGCAGAAAAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAGTCCGGGGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCGCGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTNNCGGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGANACTATCGGGAAATTCTGGAGGANAAGANNGCGGCCCAAGAGCAGGAAGAAGATACGGCCACGAAAGAGAAGGCAAGGGCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAAGCAACGAAACCCGAACGCGATCATGANGCATTATG]

[+] EMBL BX619553             [CAGGCACGAGGACGAGTNTGATATCTCGACCAAAATGGCCAGCTCAAGTACGGTTCCGTTTGTTGCCCATCAAAACCAAGTGCTTCGATTGCGCTCAAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTGCAGAAAAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAGTCCGGGGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCGCGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTNNCGGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGANACTATCGGGAAATTCTGGAGGANAAGANNGCGGCCCAAGAGCAGGAAGAAGATACGGCCACGAAAGAGAAGGCAAGGGCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAAGCAACGAAACCCGAACGCGATCATGANGCATTATG]




>consensus_6060#1
CAGGCACGAGGACGAGTNTGATATCTCGACCAAAATGGCCAGCTCAAGTACGGTTCCGTT
TGTTGCCCATCAAAACCAAGTGCTTCGATTGCGCTCAAGGACAAGGCAGAGGAGTCATTC
AAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTGCAGAAAAAGCGGTCCCGGCCACCA
CCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAGTCCGGGGACGACAACGACGACGAT
GAGGATGATATTGACGATATCTTTTCCGATGCGCCGCGCAAAAAGCCGAAGCGAAAGGAA
GACCCGACCGTGTTCGATATGACGAAAGCCCGGCGCGACATCATGAATCTTGGCTTCAGC
GGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTNNCGGCTGGCCATCAAGCTGGGCGC
CAAGCCGCCGAAAAACCAGTACCGANACTATCGGGAAATTCTGGAGGANAAGANNGCGGC
CCAAGAGCAGGAAGAAGATACGGCCACGAAAGAGAAGGCAAGGGCAGCTGGCTTACGGGG
CAATACAGTCATACAACAAAAATCAGCAGCGGAAGCGTGAGAAGCAACGAAACCCGAACG
CGATCATGANGCATTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6060#0      CCTACTGGAACGTGGTGCGATAGATTGGTTCAA--ACGAG-ATGATATCTTGACCAAAAT 57
consensus_6060#1      ------------------------CAGGCACGAGGACGAGTNTGATATCTCGACCAAAAT 36
                                                **  * *  *****  ******** *********

consensus_6060#0      GGCCAGCTCAAGTACGGTTCCGTTTGTT-CCCATCAAAACCAAG-GCTTCGATTGCGCTC 115
consensus_6060#1      GGCCAGCTCAAGTACGGTTCCGTTTGTTGCCCATCAAAACCAAGTGCTTCGATTGCGCTC 96
                      **************************** *************** ***************

consensus_6060#0      AAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTG 175
consensus_6060#1      AAGGACAAGGCAGAGGAGTCATTCAAAGTGACGGTGTTCGAGCCAAAGAAAGCAGCACTG 156
                      ************************************************************

consensus_6060#0      CAGAAAAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAG 235
consensus_6060#1      CAGAAAAAGCGGTCCCGGCCACCACCGCCGCCCAAGAAGGATGACAGTGAGAAGAACAAG 216
                      ************************************************************

consensus_6060#0      TCCGGGGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCG 295
consensus_6060#1      TCCGGGGACGACAACGACGACGATGAGGATGATATTGACGATATCTTTTCCGATGCGCCG 276
                      ************************************************************

consensus_6060#0      CGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGC 355
consensus_6060#1      CGCAAAAAGCCGAAGCGAAAGGAAGACCCGACCGTGTTCGATATGACGAAAGCCCGGCGC 336
                      ************************************************************

consensus_6060#0      GACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTT 415
consensus_6060#1      GACATCATGAATCTTGGCTTCAGCGGGTTTGACAAGGAAAGCAAACACCAGGCGAACGTN 396
                      *********************************************************** 

consensus_6060#0      C-GGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGAAACTATCGGGA 474
consensus_6060#1      NCGGCTGGCCATCAAGCTGGGCGCCAAGCCGCCGAAAAACCAGTACCGANACTATCGGGA 456
                        *********************************************** **********

consensus_6060#0      AATTCTGGAGGAAAAGAAGGCGGCCAAAGAGCAGGAAGAAGATACAGCCACGAA-GAGAA 533
consensus_6060#1      AATTCTGGAGGANAAGANNGCGGCCCAAGAGCAGGAAGAAGATACGGCCACGAAAGAGAA 516
                      ************ ****  ****** ******************* ******** *****

consensus_6060#0      GGCAAGGGCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGC 593
consensus_6060#1      GGCAAGGGCAGCTGGCTTACGGGGCAATACAGTCATACAACAAAAATCAGCAGCGGAAGC 576
                      ************************************************************

consensus_6060#0      GTGAGAAGCAACGAAACCCGAACGCGATCATGAAGCATTATGGCATTGCAAAGCCTCGTA 653
consensus_6060#1      GTGAGAAGCAACGAAACCCGAACGCGATCATGANGCATTATG------------------ 618
                      ********************************* ********                  

consensus_6060#0      TAGGGAAAAAATAAATAATTTGGGAAAACAAAAAAAAAAAAAAAAAAAAGGC 705
consensus_6060#1      ----------------------------------------------------