|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 986 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTTTCTCAATTGTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCAACTGCTTCTCTCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACTTCATAATAATCAGACAGAGAGAGAAAAGAGAGCAGGAGAGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGATCCAACCGAATCGAAACCAACCCAACAACTCCCCCACTCTCTCTATGTGTTGTCCTAGAACAAATTGTATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAGCACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCAAATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACTGGGGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTATTTAGTTACATTTAGTTTACGTTTGTAAGGCCCTCCCTAGCAGATTGTAGATACATTGTGTGTGTTTTTTGGCAGTTTAGTTTAGTTAATGTTTAATTGTTGCTTTCCGGTCACAATTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGGAAAAATATAAACACTT-TATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCAAACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTA-GGAATGGTCCTTTCATGTTGACAAAAAA]
[+] EMBL BM613908 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTTCTCAATTGTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCAACTGCTTCTCTCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACTTCATAATAATCAGACAGAGAGAGAAAAGAGAGCAGGAGAGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGATCCAACCGAATCGAAACCAACCCAACAACTCCCCCACTCTCTCTATGTGTTGTCCTAGAACAAATTGTATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAGCACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCAAATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACTGGGGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTATT ]
[+] EMBL BM626180 [ ccgATTAGTCTCCCACACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGATCCAACCGAATCGAAACCAACCCAACAACTCCCCCACTCTCTCTATGTGTTGTCCTAGAACAAATTGTATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAGCACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCAAATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACT GTGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTATTTAGTTACATTTAGTTTACGTTTGTAAGGCCCTCCCTAGCAGATTGTAGATACATTGTGTGTGTTTTTTGGCAGTTTAGTTTAGTTAATGTTTTATTGTTGCTTTCCGGTCACAATTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGTGGAAAATACAGCGGAAAAATATAAACACTT TGTGGATGCACTGAAATGAAGGTTAGAGAAAAATTCAAAAATCAAACAGGTAAATGTAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTAGGGAATGGCCCTTT ]
[+] EMBL AGA283815 [ TTTTGGCAGTTTAGTTTAGATAATGTTTAATTGTTGCCTTCCGGCCACAACTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGGAAAAATATAAACACTTATATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCAAACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTA GGAATGGTCCTTTCATGTTGACAAAAAA]
[-] EMBL AGA285105 [ TTTTGGCAGTTTAGTTTAGTTAATGTTTAATTGTTGCTTTCCGGTCACAATTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGGAAAAATATAAACACTTATATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCAAACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTA GGAATGGTCCTTTCATGT ]
consensusID : consensus_6062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence
[GCCACAGTGTAGCGAGTGGTAGTGTCCCTCCTTTTCCCCCTATGTAGCCCCTATTTAGCAATGTGTTGTTTTTTTGTTTGGTTGTGTGTGCTTGTTTGTTAGGCTATTTTTTATGTAGAAAAAAAGGTGGTGCACCTATTTTTAGGGTAAATTCCCCTGGGGAGGCACAATAGCTAATAGAAAAGGTAGAGAGAGAGAGAGAGATAGTAAGGGAGGATCCTGTCGAATGATACACACAAATCGGTCACCGTTTTTTCGGTGTTCGTTTTATAGCCCTTCCGATATCTTTACACAAACACACACACACACATACTTTAAACACTCGGGCAGTTTTCTCAATTTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCCACTGCTTCTATCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACATCATAATAATCAGACAGAGAGAGAGAGAGAAAGGAGAGCAGGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGC]
[+] EMBL BX612584 [GCCACAGTGTAGCGAGTGGTAGTGTCCCTCCTTTTCCCCCTATGTAGCCCCTATTTAGCAATGTGTTGTTTTTTTGTTTGGTTGTGTGTGCTTGTTTGTTAGGCTATTTTTTATGTAGAAAAAAAGGTGGTGCACCTATTTTTAGGGTAAATTCCCCTGGGGAGGCACAATAGCTAATAGAAAAGGTAGAGAGAGAGAGAGAGATAGTAAGGGAGGATCCTGTCGAATGATACACACAAATCGGTCACCGTTTTTTCGGTGTTCGTTTTATAGCCCTTCCGATATCTTTACACAAACACACACACACACATACTTTAAACACTCGGGCAGTTTTCTCAATTTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCCACTGCTTCTATCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACATCATAATAATCAGACAGAGAGAGAGAGAGAAAGGAGAGCAGGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6062#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTTTTCTCAATTGTGCACTATGTTAGTAAATTA 60
consensus_6062#1 ------------------------------------------------------------
consensus_6062#0 TTTGCACTTCCATTCCACCCGTTCCAACTGCTTCTCTCCACTACTTTGCACACCCATTGT 120
consensus_6062#1 ------------------------------------------------------------
consensus_6062#0 TAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACTTCATAATAATCA 180
consensus_6062#1 ------------------------------------------------------------
consensus_6062#0 GACAGAGAGAGAAAAGAGAGCAGGAGAGAGAGAGAGACAAAGAAACGTCTCGTATAGTGT 240
consensus_6062#1 ------------------------------------------------------------
consensus_6062#0 TAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCAC 300
consensus_6062#1 ------------------------------------------------------------
consensus_6062#0 ACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGA 360
consensus_6062#1 ------------------------------------------------------------
consensus_6062#0 TCCAACCGAATCGAAACCAACC-CAACAACTCCCCCACTCTCTCTATGTGTTGTCC-TAG 418
consensus_6062#1 ----GCCACAGTGTAGCGAGTGGTAGTGTCCCTCCTTTTCCCCCTATGTAGCCCCTATTT 56
** * * * * * * * * ** ** * ****** * *
consensus_6062#0 AACAAATTGT-ATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAG 477
consensus_6062#1 AGCAATGTGTTGTTTTTTTGTTTGGTTGTGT---GTGCTTGTTTGTTAGGCTATTTTTTA 113
* *** *** *** ******* ** **** **** ** * * * ** *
consensus_6062#0 CACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCA 537
consensus_6062#1 TG---------TAGAAAAAA--AGGTGGTGCACCTATTT-TTAGGGTA--AATTCCCCTG 159
*** * * * ** **** * ***** *** ** ****
consensus_6062#0 AATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACTG 597
consensus_6062#1 GGGAGGCACAATA-GCTAATAGAAAAGGTAGAG-----AGAGAGAGAGAGATAGTAAG-G 212
** * * * **** * *** * * * * * * * *** * *
consensus_6062#0 GGGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTA 657
consensus_6062#1 GAGGATCCTGTCGAATGA--TACACACAAATCGGTCACCGTTTTTTCGGTGTTCGTTTTA 270
* ** ** *** * * *** ** *** * * * * ** **
consensus_6062#0 TT-TAGTTACATTTAGTTTACGTTTGTAAGGCCCTCCCTAGCAGATTGTAGATACATTGT 716
consensus_6062#1 TAGCCCTTCCGATATCTTTACACA---AACACACACACACACATACTTTAAACACTCGGG 327
* ** * * ***** ** * * * * ** * * ** * ** *
consensus_6062#0 GTGTGTTTTTTGGCAGT-TTAGTTTAGTTAATGTTTAATTGTTGCTTTCCGGTCACAATT 775
consensus_6062#1 CAGTTTTCTCAATTTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCC 387
** ** * * ** ***** *** ** ** * **** *
consensus_6062#0 TCTGG--CCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGG 833
consensus_6062#1 ACTGCTTCTATCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGG 447
*** * * * ** *** * * * * * * ** * * *****
consensus_6062#0 AAAAATATAAACACTTTATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCA 893
consensus_6062#1 AAAAACAACAACAATATTCACAT-CATAATAATCAGACAGAGAGAGAGA-GAGAAAGGAG 505
***** * **** * * ** ** *** * ***** * * * ***
consensus_6062#0 AACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATC- 952
consensus_6062#1 AGCAGGAGA--GAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCA 563
* **** * * * * ** * ** * * ** **** * * ****
consensus_6062#0 -TAATTAGGAATGGTCCTTTCATGTTGACAAAAAA--------------------- 986
consensus_6062#1 GTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGC 619
** ** * ** ** ** *** * *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||