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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1261 fasta sequence
[CCGCCCACGCGTCCGGCAACACACAGAGTCACGAGAAGTTTTCTCCCTCGCCTCGAATGTGATTTCGAGAAAAAGACGGACTTTTTGGTGCAGATATCAGCAATACACTCCTTCGTCTACGCACAATGGATAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCTAGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATAGGACCGTTCCATGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACGAAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACGGCCACACTGCCATACATCATCAAGGTCACAGCCACATCCGGCAGCAGGTTGCTTTTAGGTTCGTGATGAAGTACATGCAACATATTTCGCCATCTGTTCAGCAGCTTCTGGTCTGACGTCACTCTCGCCGAAAGGAATTTACTTCATATATATCAGTGCAAATATCAGCACGCACAAAAACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCACCGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAGAAGGCAGTTCCGCATAGGAAAAAA---AACACACACACCGTTACCCGCTAGTGAGAAAGATGGCAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGCGCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCCCTGTATCCGCTGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGATCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCTGGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCCGGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTCGCTGCGGGCGGGTGCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGATGGTGCTCGGGATGGGTGCGCACGGTGGCAATAATGGGGCAGTGAACCCGCTCGGTATCAACTT]
[+] EMBL BM601996 [CCGCCCACGCGTCCGGCAACACACAGAGTCACGAGAAGTTTTCTCCCTCGCCTCGAATGTGATTTCGAGAAAAAGACGGACTTTTTGGTGCAGATATCAGCAATACACTCCTTCGTCTACGCACAATGGATAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCTAGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATAGGACCGTTCCATGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACGAAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACGGCCACACT ]
[+] EMBL BM575397 [ ccgCACACAGAGTCACGATAAGTTTTCTCCCTCGCCTCGAATGTGATTTCGAGAAAAAGACGGACTTTTTGGTGCAAATATCAGCAATACACTCCTTCGTCTACGCACAATGGACAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCTAGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATAGGACCGTTCCATGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACGAAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCAGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACGGCCACACTGCCATACATCATCAAGGTCACAGCCACATCCGGCAGCAGGTTGCTTTTAGGTTCGTGATGAAGTACATGCAACATATTTCGCCATCTGTTCAGCAGCTTCTGGTCTGACGTCACTCTCGCCGAAAGGAATTTACTTCATATATATCAGTGCAAATATCAGCACGCACAAAAACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCACCGTTGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAA ]
[+] EMBL BM589446 [ ccgCGTCACTCTCGCCGAAAGGAATTTACATCATATAAATCAGTGCAAACATCGGCACGCACAAAAACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCACCGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAGAAGGCAGTTCCGCATAGGAAAAAA AACACACACACCGTTACCCGCTAGTGAGAAAGATGGCAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGCGCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCCCTGTATCCGCTGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGATCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCTGGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCCGGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTCGCTGCGGGCGGGTGCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGATGGTGCTCGGGATG ]
[+] EMBL BM579319 [ ccgGGCGATTATCAGCAAGATAAGTCACTGAAGGCACCGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAGAAGGCAGTTCCGCATAGGAAAAAAAACAACACACACACCGTTACCCGCTAGTGAGAAAGATGGCAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGCGCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCGCTGTATCCGCTGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGATCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCTGGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCCGGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTTGCCGCGGGCGGGTGCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGATGGTGCTCGGGATGGGTGCGCACGGTGGCAATAATGGGGCAGTGAACCCGCTCGGTATCAACTT]
consensusID : consensus_6067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence
[CCGCCCACGCGTGCGACGAAATAGGGAAAACGCTCCTGATTGCACTATCTGACGTTCGCTTTCTTTCCCTGCAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGGTGACCTGTGCTGACCCTACGGACGGCCACACTGCCACATACATCATCAAGGTCACAGCCACATCCGGCAGC]
[+] EMBL BM608869 [CCGCCCACGCGTGCGACGAAATAGGGAAAACGCTCCTGATTGCACTATCTGACGTTCGCTTTCTTTCCCTGCAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACAACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGGTGACCTGTGCTGACCCTACGGACGGCCACACTGCCACATACATCATCAAGGTCACAGCCACATCCGGCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6067#0 CCGCCCACGCGTCCGGCAACACACAGAGTCACGAGAAGTTTTCTCCCTCGCCTCGAATGT 60
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GATTTCGAGAAAAAGACGGACTTTTTGGTGCAGATATCAGCAATACACTCCTTCGTCTAC 120
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GCACAATGGATAACGGCAACCGGCGGTGGCACCACAAATCGACGGAACAGGCGACTTTCT 180
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 AGCCGCTAAAACCGTGTGCCGTGTTGGACCGATTGGTGGCTGGGCAGATAGCTTTCGATA 240
consensus_6067#1 ---------------------------------------CCGCCCAC---GCGTGCGACG 18
* * ** ** * ***
consensus_6067#0 GGACCGTTCCA-TGCCATGAAGGACACTGGAGAACGGGGAAGGCGTTGCAGTGCAAAACG 299
consensus_6067#1 AAATAGGGAAAACGCTCCTGATTGCACTATCTGACGTTCGCTTTCTTTCCCTGCA----- 73
* * * ** * **** *** ** * ****
consensus_6067#0 AAGGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACA 359
consensus_6067#1 --GGATTATTGGCTCCGGTAGTAGTGGTCGACTAAAGCAACGGTGAACCACAAACGCACA 131
**********************************************************
consensus_6067#0 ACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGTTGACCTGTGCTGACCCTAGGCACG 419
consensus_6067#1 ACGAACCTAGGAAGGAAAGCTGCTAACACAACCAGGTGACCTGTGCTGACCCTACGGACG 191
*********************************** ****************** * ***
consensus_6067#0 GCCACACTGCCA--TACATCATCAAGGTCACAGCCACATCCGGCAGCAGGTTGCTTTTAG 477
consensus_6067#1 GCCACACTGCCACATACATCATCAAGGTCACAGCCACATCCGGCAGC------------- 238
************ *********************************
consensus_6067#0 GTTCGTGATGAAGTACATGCAACATATTTCGCCATCTGTTCAGCAGCTTCTGGTCTGACG 537
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 TCACTCTCGCCGAAAGGAATTTACTTCATATATATCAGTGCAAATATCAGCACGCACAAA 597
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 AACACATACACAGTGACTGCCAAACCGGCGATTATCAGCAAGATAAGTCACCGAAGGCAC 657
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 CGTCGTGCCATCAGCTGTTGATAGCGTGCGCATTTGGTTATTTAACAACCAAAGGTAAAG 717
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 AAGGCAGTTCCGCATAGGAAAAAAAACACACACACCGTTACCCGCTAGTGAGAAAGATGG 777
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 CAGACCCTGCAACGAACGGCAAGTTTCTGCGCACCATCGAGTGGGACATGATGGACAAGC 837
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GCAAATTTTTCCCACTCTCGATGCTGAGCTCGTTTTCGGTCCGCTGTGCCCTGTATCCGC 897
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 TGACCGTGATCAAAACGCAGCTCCAGGTACAGTTCCGGAACGACATCTACAAGGGCATGA 957
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 TCGATGCCGGCGTTAAAATCTACCGCGCCGAGGGCGTGCCCGGCCTGTACCGGGGATTCT 1017
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GGATCTCCTCGGTGCAAATCGTGAGCGGAGTGTTTTACATCAGCACGTACGAAGGGGTCC 1077
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GGCACGTGCTCGGTCAGTACGGGGCAAACCAGCGGGTAAAATCGCTCGCTGCGGGCGGGT 1137
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 GCGCTTCACTCGTCGGCCAAACCATCATCGTACCGTTCGATGTGATTTCGCAGCACGCGA 1197
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 TGGTGCTCGGGATGGGTGCGCACGGTGGCAATAATGGGGCAGTGAACCCGCTCGGTATCA 1257
consensus_6067#1 ------------------------------------------------------------
consensus_6067#0 ACTT 1261
consensus_6067#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||