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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 908 fasta sequence
[CCGTCCAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTGCCAAGTTCATGATAGCAGAAACGCTACCCAGTTCACGATAGTAAACGTTTATCGGTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAGAAAGCAATATTCACACGGATGCCTACCATTTCATGATGCGTGATATTACATATACAACTAATCGCACCCATATGCTAGCGTAAGAAAACTGAGCTAGCATTCGT]
[+] EMBL BM604588 [CCGTCCAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAAT ]
[+] EMBL BM579692 [ ccgCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTGCCAAGTTCATGATAGCAGAAACGCTACCCAGTTCACGATAGTAAACGTTTATCGGTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAGAAAGCAATATTCACACGGATGCCTACC ]
[+] EMBL BM595695 [ ccgGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTCCGGTAGGGAGCGGCAACGGCATCAAACCAGCAGTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTTTCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTTCCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTGCCAAGTTCATGATAGCAGAAACGCTACCCAGTTCACGATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAG AAGCAATATTCACACGGATGCCTACCATTTCATGATGCGTGATATTACATATACAACTAATCGCACCCATATGCTAGCGTAAGAAAACTGAGCTAGCATTCGT]
consensusID : consensus_6071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCACAGGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACTACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCTGGGAGGATTGGTTGATTTGTTCTAATTTAGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCATCAATTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGGGTCCATTTCGTTCGTCTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCATAACGTTGTATTTTCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTACCAAGTTCATGATAGCAGAAAGGCTACCCAGTTCACGAATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGT]
[+] EMBL BM647445 [CCGCCCACGCGTCCGCCCACGCGTCCGCACAGGTATCCAAAATTGGAGTCTTCTCTTGTGGACCACTACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTAATCGAACAACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGCTATCGTTTAATCGCAACGCACCAGTCTGGGAGGATTGGTTGATTTGTTCTAATTTAGAAAGCGAAAGCGTGTCTCGTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCGTTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCATCAATTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGGGTCCATTTCGTTCGTCTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCATAACGTTGTATTTTCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTAAAAAGCAAAACTAAATCCTATTCCTACCAAGTTCATGATAGCAGAAAGGCTACCCAGTTCACGAATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAAAGT]
consensusID : consensus_6071#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[GGCAAGAATCGGCACGATNGAGTGGCGTGTAAGAAGGTATACCTCCTTTGGATCTGCCCGTCGCACAAGCATTTCGAGTGGTTTATCGACGTATTGCGGGATGTGGAGAAGAAGGATGTTACGAATGTGCTAGAGATTCATATTTTCATCACACAATTCTTCCATAAATTTGATCTTCGAACAACCATGCTGTACATTTGTGAAAATCACTTCCAACGACTCTCTAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCNCTTGTGGACCACGACCGTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGGAGCCGCAAATGGCCGTACTTTATTCATCATTTTCGAAAAACTTTGGCTAATCGAACAACGAAACAAGAAAAAGGCTGGTTCACGACACATTTCATCGTACCTTTTCTCAATTCCAGTACTCAATTAAGGCTAATCGGTCGATCAANTCGGACAAACAGCACCAAGGTACTGGGCAGGGATTGGTTAGATTN]
[+] EMBL BX467555 [GGCAAGAATCGGCACGATNGAGTGGCGTGTAAGAAGGTATACCTCCTTTGGATCTGCCCGTCGCACAAGCATTTCGAGTGGTTTATCGACGTATTGCGGGATGTGGAGAAGAAGGATGTTACGAATGTGCTAGAGATTCATATTTTCATCACACAATTCTTCCATAAATTTGATCTTCGAACAACCATGCTGTACATTTGTGAAAATCACTTCCAACGACTCTCTAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTCTTCNCTTGTGGACCACGACCGTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAACAAGGAGCCGCAAATGGCCGTACTTTATTCATCATTTTCGAAAAACTTTGGCTAATCGAACAACGAAACAAGAAAAAGGCTGGTTCACGACACATTTCATCGTACCTTTTCTCAATTCCAGTACTCAATTAAGGCTAATCGGTCGATCAANTCGGACAAACAGCACCAAGGTACTGGGCAGGGATTGGTTAGATTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6071#0 CCGTCCAAGACGTCTATGTTTACCGGGCTAAAAGCAGTGAATCATTTTGGCCGTCCCGAT 60
consensus_6071#1 ------------------------------------------------------------
consensus_6071#2 ------------------------------------------------------------
consensus_6071#0 ATGTCCAGTTTCCTGAAATTCGTCCAAAAGAAGCATTCTTATGTATCCAAAATTGGAGTC 120
consensus_6071#1 -------CCGCCCACGCGTCCGCCCACG---CGTCCGCACAGGTATCCAAAATTGGAGTC 50
consensus_6071#2 ------------------------------------------------------------
consensus_6071#0 TTCTCTTGTGGACCACGACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAAC 180
consensus_6071#1 TTCTCTTGTGGACCACTACCGCTCACCAAGAGTGTCATGTCGGCATGTGATGAAGTGAAC 110
consensus_6071#2 -----------------GGCAAGAATCGGCACGATNGAGT-GGCGTGTAAGAAGGTATAC 42
* * * * * ** *** *** * * ** **
consensus_6071#0 AAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTA---ATCGAAC 237
consensus_6071#1 AAGAGCCGCAAATGGCCGTACTTTATTCATCATTTCGAAAACTTTGGCTA---ATCGAAC 167
consensus_6071#2 CTCCTTTGGATCTGCCCGTCGCACA---AGCATTTCGAGTGGTTTATCGACGTATTGCGG 99
* * ** **** * * ******** *** * * ** *
consensus_6071#0 AACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGC 297
consensus_6071#1 AACAAACAAGAAAAGGCTGTTCACACCTTCATCGTCCTTTCTCATTCCATACTAATAAGC 227
consensus_6071#2 GATGTGGAGAAGAAGGATGTTACGAATGTGCTAGAGATTCATATTTTCATCACACAATTC 159
* * * **** **** * * * * ** * ** *** * * *
consensus_6071#0 TATCGTTTAATCGCAACGC-ACCAGTCATGGGACGATTGGTAGATTTGTTCTAATTTCGA 356
consensus_6071#1 TATCGTTTAATCGCAACGC-ACCAGTC-TGGGAGGATTGGTTGATTTGTTCTAATTTAGA 285
consensus_6071#2 TTCCATAAATTTGATCTTCGAACAACCATG-------CTGTACATTTGTGAAAATC---A 209
* * * * * * * * ** * ** ** ****** *** *
consensus_6071#0 AAGCGAAAGCGTGTCTC-GTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCG 415
consensus_6071#1 AAGCGAAAGCGTGTCTC-GTCGATTATTTTTTATAACCTAGTTTTCAATGTTTGTATGCG 344
consensus_6071#2 CTTCCAACGACTCTCTAAGACGTCTATGTTTACCGGGCTAAAAG-CAGTGAATCATTTTG 268
* ** * * *** * ** *** *** *** ** ** * * *
consensus_6071#0 TTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCAG--- 472
consensus_6071#1 TTTCTGATTGTATGTGTAGCTTTTCGGTAGGGAGCGGCAACGGCATCAAACCAGCATCAA 404
consensus_6071#2 GCCGTCCCGATATGTCCAGTTTCCTGAAATTCGTC--CAAAAGAAGCATTCTTATGT--- 323
* ***** ** ** * * * *** * * ** *
consensus_6071#0 -TTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGTGTCCGTT 531
consensus_6071#1 TTTTCAGTATTTGCGTTAGTCTCATTTGATATTCCAGCGTCATTATCAAATGGGTCCATT 464
consensus_6071#2 -ATCCAAAATTGG----AGTCTTCNCTTGTGGACCACGACCGTCACCAAGAGTGTC-ATG 377
* ** *** * ***** * * *** * * * *** * *** *
consensus_6071#0 TCGTTCGTTTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCGTAACGTTGTATTT 591
consensus_6071#1 TCGTTCGTCTTAACGTTAGGTATAGAATATCCAGATCTTCGTTTGCATAACGTTGTATTT 524
consensus_6071#2 TCGGC-------ATGTGATGAAGTGAACAAGGAG--------CCGCAAATGGCCGTACTT 422
*** * ** * * * *** * ** ** * * *** **
consensus_6071#0 CCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTA 651
consensus_6071#1 TCCCTCCAAACACTGCCTAAAAGGCTTATTTATTCTCCTTTCAGAAGGAAGAAATCCTTA 584
consensus_6071#2 TATTC---ATCATTTTCGAAAAACTTTGGCTAATCGAACAACGAAACAAGAAAAAGGCTG 479
* ** * * **** ** ** ** * ** * *** *
consensus_6071#0 AAAAGCAAAAC--TAAATCCTATTCCTGC-CAAGTTCATGATAGCAGAAACGCTACCCAG 708
consensus_6071#1 AAAAGCAAAAC--TAAATCCTATTCCTAC-CAAGTTCATGATAGCAGAAAGGCTACCCAG 641
consensus_6071#2 GTTCACGACACATTTCATCGTACCTTTTCTCAATTCCAGTACTCAATTAAGGCTAATCGG 539
* * ** * *** ** * * *** * ** * * ** **** * *
consensus_6071#0 TTCACGA-TAGTAAACGTTTATCGGTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAA 767
consensus_6071#1 TTCACGAATAGTAAACGTTTATCGTTTTGCTTTGTTCGCTCGCAGAACAGTTAGTTTTAA 701
consensus_6071#2 TCGATCA-ANTCGGACAAACAGCACCAAGGTAC---TGGGCAGGGATTGGTTAGATTN-- 593
* * * ** * * * * * * ** ***** **
consensus_6071#0 AGTCTCTTGCAAGCATATATCGCTAAAAGATCAATAGAAAGCAATATTCACACGGATGCC 827
consensus_6071#1 AGT--------------------------------------------------------- 704
consensus_6071#2 ------------------------------------------------------------
consensus_6071#0 TACCATTTCATGATGCGTGATATTACATATACAACTAATCGCACCCATATGCTAGCGTAA 887
consensus_6071#1 ------------------------------------------------------------
consensus_6071#2 ------------------------------------------------------------
consensus_6071#0 GAAAACTGAGCTAGCATTCGT 908
consensus_6071#1 ---------------------
consensus_6071#2 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||