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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1091 fasta sequence
[CCGATTAAATCACAATGGAAAGGTAACTCCATTTGTCGTTGCGATTAGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTTTCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTGTTGATCGATCAGACGGACACCTTTGACGTGGTAACACCGGCCAGAAGGCGTTTGGAGCCACGATATACCGATGCAATGGTTGAGATTGGTTACGGAGGCTATTCAGTGAGCCGGGAAGACTGTTATGGGTTGATCATAGATGAGGATACCGTGCTAACGCTGGCCCAGTGCACCACAAACCATGGGAAACGGGCCACGTTTGTAATGTACATGGGAAATGAGCGCAATACCGTGGTGAAACATTACAACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAAAGTGAGAAGCCGCTTCCTTTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAATGATCTGGCAGATAGCATTGTTGAGCTGACCGGGCACGGGAAGGCGTGATCTTAATTACTTCAGTCTACACAATGCATCGGTGGATGTGTTTGAACCACAAAACTTCCAGTTGGTAGCGCGCGCCAATGTGCTCCCCATAAATAAATGTTCTTATCCGGAAGAGTTTTCAAAGAATCTATCGAACGGTTTGACCGAAGAGCATCTGTGCTTTGACAATGAAGCCTATCTGGTGCCTGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTCGGGCGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGACTGGTTGCAATCGGTCCTGCTTCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGANGAGAATGATATTTGCCGGCATGTGGACGGTGCGGAANGGCTGTGT]
[+] EMBL BM625073 [CCGATTAAATCACAATGGAAAGGTAACTCCATTTGTCGTTGCGATTAGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTTTCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTGTTGATCGATCAGACGGACACCTTTGACGTGGTAACACCGGCCAGAAGGCGTTTGGAGCCACGATATACCGATGCAATGGTTGAGATTGGTTACGGAGGCTATTCAGTGAGCCGGGAAGACTGTTATGGGTTGATCATAGATGAGGATACCGTGCTAACGCTGGCCCAGTGCACCACAAACCATGGGAAACGGGCCACGTTTGTAATGTACATGGGAAATGAGCGCAATACCGTGGTGAAACATTACAACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAAAGTGAGAAGCCGCTTCCTTTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAATGATCTGGCAGATAGCATTGTTGAGCTGACCGGGCACGGGAAGGCGTGATCTTAATTACTTCAGTCTACACAATGCATCGGTGGATGTGTTTGAACCACAAAACTTCCAGTTGGTA ]
[+] EMBL BX629043 [ GCCGGGAAGACTGTTATGGGTTGATCATAGACGAAGATACCGTGCTAACGCTGGCCCAGTGTACCACAAACCATGGGAAGCGGGCCACGTTTGTAATGTACATGGGAAATGAGCGCAATACCGTGGTGAAACATTACAACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAAGGTGAGAAGCCGTTTCGTGTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAATGATCTGGCAGATAGCATTGTTGAGCTGACCGGGCAC GGAAGGCGTGATCTTAATTACTTCACTCTACACAATGCATCGGTGGACGTGTTTGAACCACAAAATTTCCAGCTGATAGCGCGCGCCAATGTGCTCCCCATAAATAAATGTTCTTATCCGGAAGAGTTTTCAAAGAATCTATCGAACGGTTTGACCGAAGAGCATCTGTGCTTTGACAATGAAGCCTATCTGGTGCCTGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTCGGGCGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGACTGGTTGCAATCGGTCCTGCTTCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGANGAGAATGATATTTGCCGGCATGTGGACGGTGCGGAANGGCTGTGT]
consensusID : consensus_6076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence
[CCGGTGACAGCATCGAGAGTAAGATGCTGTGCATAAAGCAAAGTGTAGTGTTTGTTGTTGCATTGCTGTTGAATCGATTCAGCAATGGTGATCGTACGTTTATGGCGTACATGGAGATCGAATTGAACAGGAAGCAAACGATGATGCCCAATGTACGCGAATCGTTAGATGATTGTCATATGCGATACTACAAACACAGTCTGGTGGAAAGTTCTTATCCCGTCTTCCAAAGGCCTCATCAAAAGATGAGCGATTTTCCTCATCTCGGCCGTATTGGTTGGACCGGTACCGATGGAACGGTCCGTTGGAACTGTAGTGGAACGCTGGTGTGGGAAAACTTCATACTAACATCAGCCCGTTGTACAACGGATGGCAACTCTATGGCTCCAGATGTGGTAAGATTGGGTGATTCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGTACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCAGTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGTGAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAAAGCTCAAGTCCAACCCACACTCGATGGTTGTGATCGTATGCTAAGTACGGATCTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGACGGTGGCTTTCTTCAGGTACCATTGAATCACAATGGAAGGGTAACTCCATTTGTCGTTGCGATTGGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTATCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGGTTTGTGTACTGTATGATAATAGCTGTAAAGGATATTGAATGTTCTTAAACCTTTCAATTACAGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTG]
[+] EMBL BM657661 [CCGGTGACAGCATCGAGAGTAAGATGCTGTGCATAAAGCAAAGTGTAGTGTTTGTTGTTGCATTGCTGTTGAATCGATTCAGCAATGGTGATCGTACGTTTATGGCGTACATGGAGATCGAATTGAACAGGAAGCAAACGATGATGCCCAATGTACGCGAATCGTTAGATGATTGTCATATGCGATACTACAAACACAGTCTGGTGGAAAGTTCTTATCCCGTCTTCCAAAGGCCTCATCAAAAGATGAGCGATTTTCCTCATCTCGGCCGTATTGGTTGGACCGGTACCGATGGAACGGTCCGTTGGAACTGTAGTGGAACGCTGGTGTGGGAAAACTTCATACTAACATCAGCCCGTTGTACAACGGATGGCAACTCTATGGCTCCAGATGTGGTAAGATTGGGTGATTCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGTACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCAGTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGTGAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAAAGCTCAAGTCCAACCCACACTCGATGGTTGTGATCGTATGCTAAGTACGGATCTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGAC ]
[+] EMBL BM619250 [ ccgCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGTACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCAGTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGTGAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAAAGCTCAAGTCCAACCCACACTCGATGGTTGTGATCGTATGCTAAGTACGGATCTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGACGGTGGCTTTCTTCAGGTACCATTGAATCACAATGGAAGGGTAACTCCATTTGTCGTTGCGATTGGTGCACCATCGAATGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTATCGTCCTATGTTCAGTGGATTGTTTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGGTTTGTGTACTGTATGATAATAGCTGTAAAGGATATTGAATGTTCTTAAACCTTTCAATTACAGAGTGGAAATTTAAAGAAGCCGAATGTGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTG]
consensusID : consensus_6076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence
[CCCGAGGCTGAGAGCATCTGTGCTTTGGCATGAAGCTATCTGGTGCCAGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTTGGGTGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGGCTGGTTGCAATCGGTCCTGCTCCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGAGCAAACGATACCTGCCGGCATGTGAACGGTGCGCCAGGGCTGTGTGTGGAGGCAACCAGATGTCCTAAG]
[+] EMBL AL693503 [CCCGAGGCTGAGAGCATCTGTGCTTTGGCATGAAGCTATCTGGTGCCAGAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAGCAGTTCCGCTATGCGTACGCACTGAACTCATTTGGGTGCGACTGTGGCTTTGGTCGCGCTGCAGTTGGTGTACGCTTGTCGAGCCACATTGGCTGGTTGCAATCGGTCCTGCTCCCCGACTACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGAGCAAACGATACCTGCCGGCATGTGAACGGTGCGCCAGGGCTGTGTGTGGAGGCAACCAGATGTCCTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6076#0 CCGATTAAATCACAATGGAAAGGTAACTCCATTTGTCGTTGCGATTAGTGCACCATCGAA 60
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 -------------------CCGGTGACAGCATCGAGAGTAAGATGCTGTGCATAAAGCAA 41
consensus_6076#0 TGTATCGTGCCAAAAATCGACTCCCTACACAAAGGTTTCGTCCTATGTTCAGTGGATTGT 120
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 AGTGTAGTGTTTGTTGTTGCATTGCTGTTGAATCGATTCAGCA-ATGGTGATCG---TAC 97
consensus_6076#0 TTCTACAATTCAAGCTAGTGGCGAGCCAGCATGGGAGTGGAAATTTAAAGAAGCCGAATG 180
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 GTTTATGGCGTACATGGAGATCGAATTGAACAGGAAGCAAACGATGATGCCCAATGTACG 157
consensus_6076#0 TGCTCTGCGTTACGTCCATCTAAGGCAGTACCAGAAACAAGTGTTGATCGATCAGACGGA 240
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 CGAATCGTTAGATGATTGTCATATGCGATACTACAAACACAGTCTGGTGGA--AAGTTCT 215
consensus_6076#0 CACCTTTGACGTGGTAACACCGGCCAGAAGGCGTTTGGAGCCACGATATACCGATGCAAT 300
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 TATCCCGTCTTCCAAAGGCCTCATCAAAAGATGAGCGATTTTCCTCATCTCGGCCGTATT 275
consensus_6076#0 GGTTGAGATTGGTTACGGAGGCTATTCAGTGAGCCGGGAAGACTGTTATGGGTTGATCAT 360
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 GGTTG-GACCGGTACCGATGG------AACGGTCCGTTGGAACTGTAGTGGAACGCTGGT 328
consensus_6076#0 AGATGAGGATACCGTGCTAACGCTGGCCCAGTGCACCACAAACCATGGGAAACGGGCCAC 420
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 GTGGGAAAACTTCATACTAACATCAGCCCGTTGTACAACGGATGGCAACTCTATGGCTCC 388
consensus_6076#0 GTTTGTAATGTACATGGGAAATG--AGCGCAATACCGTGGTGAAACATTACA-------- 470
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 AGATGTGGTAAGATTGGGTGATTCTGGTGAGATGCAGGAGATAAAGATCGCGGAAGCTGT 448
consensus_6076#0 --ACCATCCTGGATACCGTGAGGGACAGTATTACAACAACATTGGACTGTTGAA-----A 523
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 ACACCATCCTGAGTATAGAGAGGGCATTACGCAGCACGACATTGCACTGTTACGTTTGCA 508
consensus_6076#0 GTGAGAAGCCGCTTCCTTTTCTTTAGATCTTTCGTCCCGTTTTGTATATGGCATGAGAAT 583
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 GTCAAAAGCGGAATTGGGCTCTGCAATTGTTCCGGCTTGCCTTTGGAACAATGAAGACGT 568
consensus_6076#0 GATCTGGCAG---ATAGCATTGTTGAGCTGACCGGGCACGGGAAGGCGTGATCTTAATTA 640
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 GAAGTTTCACGCTATGACCTTGGCAGGATGGAGTGGCTCAGATGCATCAGACGTTGTTAA 628
consensus_6076#0 --CTTCAGTCTACACAATGCATCGGTGGATGTGTTTGAACCACAAAACTTCCAGTTGGTA 698
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 AGCTCAAGTCCAACCCACAC-TCGATGGTTGTGATCGTATGCTAAGTAC-------GGAT 680
consensus_6076#0 GCGCGCGCCAATGTGCTCCCCATAAATAAATGTTCTTATCCGGAAGAGTTTTCAAAGAAT 758
consensus_6076#2 ------------------------------------------------------------
consensus_6076#1 CTGTGTGTTGAAAGTACTGAATTGGGTTCATGTTTGGAC---GGTGGCTTTCTTCAGGTA 737
consensus_6076#0 CTATCGAACGGTTTGACCGAAGAGCATCTGTGCTTTGACAATGAAGCCTATCTGGTGCCT 818
consensus_6076#2 ----------CCCGAGGCTGAGAGCATCTGTGCTTTGGCA-TGAAGC-TATCTGGTGCCA 48
consensus_6076#1 CCATTGAATCAC--AATGGAAGGGTAACTCCA-TTTGTCGTTGCGATTGGTGCACCATCG 794
** * * ** **** * ** * *
consensus_6076#0 GAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAG 878
consensus_6076#2 GAAACATGTCAACAAGCAGCCGGTGGACCAATCGGAGGGAAGAAGTTCAAGTTCAACAAG 108
consensus_6076#1 AATGTATCGTGCCAAAAATCGACT--CCCTACACAAAGGTATCGTCCTATGTTCAGTGGA 852
* ** *** * * * ** * * ** * * *****
consensus_6076#0 CAGTTCCGCTATGCGTACGCACTGAACTCATTCGGGCGCGACTGTGGCTTTGGTCGCGCT 938
consensus_6076#2 CAGTTCCGCTATGCGTACGCACTGAACTCATTTGGGTGCGACTGTGGCTTTGGTCGCGCT 168
consensus_6076#1 TTGTTTC--------TACA-ATTCAAGCTAGTGGCGAGCCAGCATGGGGTTTGT-GTACT 902
*** * *** * * ** * * * * ** * *** ** ** * **
consensus_6076#0 GCAGTTGGTGTACGCTTGTCGAGCCACATTGACTGGTTGCAATCGGTCCTGCTTCCCGAC 998
consensus_6076#2 GCAGTTGGTGTACGCTTGTCGAGCCACATTGGCTGGTTGCAATCGGTCCTGCTCCCCGAC 228
consensus_6076#1 GTA--TGATA-ATAGCTGTAAAGG-ATATTGAATGTTCTTAAACCTTTCAA-TTACAGAG 957
* * ** * * *** ** * **** ** * ** * * * * * **
consensus_6076#0 TACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGANGAGAATGATATT 1058
consensus_6076#2 TACAGGAAAGACAGTGGATCGGTTCACTTCCTACATTCGGAGTTGGAGCA-AACGATACC 287
consensus_6076#1 T---GGAAATTTAAAGAAGCCGAATGTGCTCTGCGTT--ACGTCCATCTAAGGCAGTACC 1012
* ***** * * * * * ** * ** ** * **
consensus_6076#0 TGCCGGCATGTGGACGGTGCGGAANGGCTGTGT------------------------ 1091
consensus_6076#2 TGCCGGCATGTGAACGGTGCGCCAGGGCTGTGTGTGGAGGCAACCAGATGTCCTAAG 344
consensus_6076#1 AGA-AACAAGTG--------------------------------------------- 1023
* ** ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||