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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1034 fasta sequence
[TACGCGCGCGGTGGATGGTTCGCCCGTTGATTTAGGATTTCCCCGTAGCGCACAAACGCACATACACATACACAACAAGGCAAGGCCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGT-AACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTAGTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAAAGCTGTG-TTTTTTTGGAGATTGGTTTTAGCAAG-TAACAGAAAAAATAACACCAAAAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCATGCTGTTTGTCAGGGTGTATGGTTTACAAAAGAAGTCAATTACACCAGATGAAACAATTCTGCAATGTATCGTACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTTAAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAG-AGTTGCTAGTATTGATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAAACACCGGGGACACACATAATAAATAGTGCCTTACGTTT]
[+] EMBL BX618487 [TACGCGCGCGGTGGATGGTTCGCCCGTTGATTTAGGATTTCCCCGTAGCGCACAAACGCACATACACATACACAACAAGGCAAGGCCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGT AACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTAGTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAATAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATT ]
[+] EMBL BX617034 [ CGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGTGAACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTAGTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTTCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAAAGCTGTG TTTTTTTGGAGATTGGTTTTAGCAAG TAACAGAAAAAATAACACCAAAAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCATGCTGTTTGTCAGGGTGTATGGTTTACAAAAGAAGTCAATTACACCAGATGAAACAATTCTGCAATGTATCGTACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTTAAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAG AGTTGCTATTATTGATCATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAG ]
[+] EMBL BM609514 [ ccgCTTTATTTAAACAAAAACAACGCTAGTGGTGCACAATTGCACCAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAAAACTGTGTTTTTTTTGGAGATTGGATTTAG AAGAGAACAG AAAAATAACACCAAAAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCTTGCTGTTTGTCAGGGTGTATGGTTTACAAAAGAAGGCAATTACACCAGATGAAACAATTCTGCAATGTATCGTACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTTAAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAGAATTTGCTAGTATTGATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAA ]
[+] EMBL BM644767 [ ccgTACCACTAGTTCCTCCCTCACAGGCCAACATAG AATTGCTAGTATTGATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCTCGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAAACACCGGGGACACACATAATAAATAGTGCCTTACGTTT]
consensusID : consensus_6084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[AATCGCCCCGAGGNCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGAAAAGGGCGAAGGAAAAAGGCGAACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTACTCGCAGTGTCGTGTGCATGGGCCACACGTGCGCGTATGGCGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTTGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAACAGC]
[+] EMBL AL934982 [AATCGCCCCGAGGNCATTACGAAACGAACAAATATTTAAGCAACATTGATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTTGTGTAAAGTCGATCGGAGCGAAAAGGGCGAAGGAAAAAGGCGAACAGGAATAGTAACAAAACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCCGATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTACTCGCAGTGTCGTGTGCATGGGCCACACGTGCGCGTATGGCGCACACGCGGAAGCGGTTGTCCTTTATTTAAACAAAAACAACGCTTGTAGTGCACAACTGCACAAGCTCGTGCTCTACTAACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAAACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAACAGAACAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6084#0 TACGCGCGCGGTGGATGGTTCGCCCGTTGATTTAGGATTTCCCCGTAGCGCACAAACGCA 60
consensus_6084#1 ------------------------------------------------------------
consensus_6084#0 CATACACATACACAACAAGGCAAGGCCATTACGAAACGAACAAATATTTAAGCAACATTG 120
consensus_6084#1 ------------AATCGCCCCGAGGNCATTACGAAACGAACAAATATTTAAGCAACATTG 48
* * * *** **********************************
consensus_6084#0 ATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTT 180
consensus_6084#1 ATATTGTACGATAACATGATAGAGCAGAGCGGGCGGATGAAGGAAGTAAGGTATAGTTTT 108
************************************************************
consensus_6084#0 GTGTAAAGTCGATCGGAGCGTAAAGGGCGAAGGAAAAAGGT-AACAGGAATAGTAACAAA 239
consensus_6084#1 GTGTAAAGTCGATCGGAGCGAAAAGGGCGAAGGAAAAAGGCGAACAGGAATAGTAACAAA 168
******************** ******************* ******************
consensus_6084#0 ACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTC- 298
consensus_6084#1 ACAACAAACAATATTGTTCAAATGTGATTTTAGAACCTTATATGTGTAGGAATAATTTCC 228
***********************************************************
consensus_6084#0 GATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTA 358
consensus_6084#1 GATGTTGATGCATAGCTATTCTATGGTGTCTCTAGAGACAGTCGCGCTTCCGCCGCGTTA 288
************************************************************
consensus_6084#0 GTAGCAGTGTCGTGTGCATTGGCCACACGTGCGCTTATGGTGCACACGCGGAAGCGGTTG 418
consensus_6084#1 CTCGCAGTGTCGTGTGCATGGGCCACACGTGCGCGTATGGCGCACACGCGGAAGCGGTTG 348
* **************** ************** ***** *******************
consensus_6084#0 TCCTTTATTTAAACAAAAACAACGCTAGTAGTGCACAACTGCACAAGCTCGTGCTCTACT 478
consensus_6084#1 TCCTTTATTTAAACAAAAACAACGCTTGTAGTGCACAACTGCACAAGCTCGTGCTCTACT 408
************************** *********************************
consensus_6084#0 AACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAA 538
consensus_6084#1 AACTTATGAAGAAGCATCCATCGTTCTTATGGTTACAATTAGACTCAATTTTGTAGAAAA 468
************************************************************
consensus_6084#0 ACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAA 598
consensus_6084#1 ACAATGTGAAAGCTGTGGATAGAAAGTGAGCGATGTAGTAACGTGTGTAGTAATATTTAA 528
************************************************************
consensus_6084#0 CAGAA-AGCTGTGTTTTTTTGGAGATTGGTTTTAGCAAGTAACAGAAAAAATAACACCAA 657
consensus_6084#1 CAGAACAGC--------------------------------------------------- 537
***** ***
consensus_6084#0 AAGTTAAAATTGTTTGCAAAATCGGCTCACACACGCACCACACACCCATGCTGTTTGTCA 717
consensus_6084#1 ------------------------------------------------------------
consensus_6084#0 GGGTGTATGGTTTACAAAAGAAGTCAATTACACCAGATGAAACAATTCTGCAATGTATCG 777
consensus_6084#1 ------------------------------------------------------------
consensus_6084#0 TACACACACGCACATTCCTATGCTGTTTGCAGATTGATGAGAGTATGCATATAACCTGTT 837
consensus_6084#1 ------------------------------------------------------------
consensus_6084#0 AAAGTGTACCAATATACCACTAGTTCCTCCCTCACAGGCCAACATAGAGTTGCTAGTATT 897
consensus_6084#1 ------------------------------------------------------------
consensus_6084#0 GATTATAGTAGTTGTGAATGTAGACAAAAACACGCCGCTAATTCCTGTGCGCTTGTTTCT 957
consensus_6084#1 ------------------------------------------------------------
consensus_6084#0 CGCAGTGCATTTGGTTAGCGCCGGGGTTTCTTGCACTAAACACCGGGGACACACATAATA 1017
consensus_6084#1 ------------------------------------------------------------
consensus_6084#0 AATAGTGCCTTACGTTT 1034
consensus_6084#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||