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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[GGCAAGAATCCGCGCACGATGGGAAACGCACGCATTGCCGGGGCTCCAGCATTGAATAAGTGCTCTATTTTTTGGGTTTAGTTTTTTGGCACCATGGAACGAGAAACGTTAGAAAGCACTGTGTACGAGATAACGAGAGGGGCGAAAACTTGGCACAAAGCAGTCAAACAACGAACCAACAATGAACGGACGACATCCTCCCCCCCGGTGAAATGTACAAAGGAACAAAGTAACAGCAACAGTCGCAGACCAACGAACGGCTACTACGGGTGCCGGGTGCGAGCAAATAATAATCTGGTCTACCGGGAGAGCAGAAGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCCTGGAAACATTGGAGCAAATGGGCAAAAGAGAAGCAAATTGGGAGGATTGGGGGAANAGGAGAAAAAACTTTCCTTTTAATAGGGACAACAGGGAAGGATCATTTTCTC]
[+] EMBL BX467845 [GGCAAGAATCCGCGCACGATGGGAAACGCACGCATTGCCGGGGCTCCAGCATTGAATAAGTGCTCTATTTTTTGGGTTTAGTTTTTTGGCACCATGGAACGAGAAACGTTAGAAAGCACTGTGTACGAGATAACGAGAGGGGCGAAAACTTGGCACAAAGCAGTCAAACAACGAACCAACAATGAACGGACGACATCCTCCCCCCCGGTGAAATGTACAAAGGAACAAAGTAACAGCAACAGTCGCAGACCAACGAACGGCTACTACGGGTGCCGGGTGCGAGCAAATAATAATCTGGTCTACCGGGAGAGCAGAAGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCCTGGAAACATTGGAGCAAATGGGCAAAAGAGAAGCAAATTGGGAGGATTGGGGGAANAGGAGAAAAAACTTTCCTTTTAATAGGGACAACAGGGAAGGATCATTTTCTC]
consensusID : consensus_6086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 742 fasta sequence
[AGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCA-GTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTTTGTACCAACACCAATCGGTACACGTATATGGCGTCTCCCACGCGTCCGCGG]
[-] EMBL BX625373 [AGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCATGT TGCGGCCGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACCTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAGCAGAAGCGGCAAAAAGG ]
[-] EMBL BM615258 [ ACTTTGCCTTGCCAACCTTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCA GTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAACCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTTTGTACCAACACCAATCGG ]
[-] EMBL BM648520 [ GCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCA GTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAATCGATACACGTATATGGCGTCTCCCACGCGTCCGCGG]
consensusID : consensus_6086#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[TTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAATCGATACACGTATATGGCGTCTCCCCGAGGGTAAGGGGTGAGATTTTGCGG]
[-] EMBL BM653279 [TTTCTGCAGCGCCAGTATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGCACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAGCTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAGTAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGCCCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGCTCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAGGACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTACGTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAGTAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTTTTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAATCGATACACGTATATGGCGTCTCCCCGAGGGTAAGGGGTGAGATTTTGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6086#1 ------------------------------------------------------------
consensus_6086#2 ------------------------------------------------------------
consensus_6086#0 GGCAAGAATCCGCGCACGATGGGAAACGCACGCATTGCCGGGGCTCCAGCATTGAATAAG 60
consensus_6086#1 ------------------------------------------------------------
consensus_6086#2 ------------------------------------------------------------
consensus_6086#0 TGCTCTATTTTTTGGGTTTAGTTTTTTGGCACCATGGAACGAGAAACGTTAGAAAGCACT 120
consensus_6086#1 ------------------------------------------------------------
consensus_6086#2 ------------------------------------------------------------
consensus_6086#0 GTGTACGAGATAACGAGAGGGGCGAAAACTTGGCACAAAGCAGTCAAACAACGAACCAAC 180
consensus_6086#1 ------------------------------------------------------------
consensus_6086#2 ------------------------------------------------------------
consensus_6086#0 AATGAACGGACGACATCCTCCCCCCCGGTGAAATGTACAAAGGAACAAAGTAACAGCAAC 240
consensus_6086#1 ------------------------------------------------------------
consensus_6086#2 ------------------------------------------------------------
consensus_6086#0 AGTCGCAGACCAACGAACGGCTACTACGGGTGCCGGGTGCGAGCAAATAATAATCTGGTC 300
consensus_6086#1 ---------------AGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACC 45
consensus_6086#2 ------------------------------------------------------------
consensus_6086#0 TACCGGGAGAGCAGAAGCAAACGACTGGCACCGGGACCCGACTACTTTGCCTTGCCAACC 360
consensus_6086#1 TTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGT 105
consensus_6086#2 --------------------------------------------TTTCTGCAGCGCCAGT 16
consensus_6086#0 TTGAGCGCGCGCATTACCTGCTCCTCCCGGATCAGAGCCTGAATTTTCTGCAGCGCCAGT 420
****************
consensus_6086#1 ATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGC 165
consensus_6086#2 ATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACACACATGTCCTGCAGC 76
consensus_6086#0 ATCAGGCTGACCAGATTGACCGCGTACGTGGTGACGCACACGACGCACATGTCCTGCAGC 480
******************************************** ***************
consensus_6086#1 ACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAG 225
consensus_6086#2 ACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAG 136
consensus_6086#0 ACGAAGTAGAGCAGGTAGGCGAGGTAGAGCGACAGCCCGTTGGACAGCAGTATGAGGTAG 540
************************************************************
consensus_6086#1 CTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAG 285
consensus_6086#2 CTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAG 196
consensus_6086#0 CTGGTCAGCCGCGAGACGGCCAGATTGTTGCTGAAGCTGAGGCCGGCCACTAGGAAGTAG 600
************************************************************
consensus_6086#1 TAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGC 345
consensus_6086#2 TAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGC 256
consensus_6086#0 TAGAAGATGCCGTAGAACCCGTTCGGCACGTTCAGCAGCGAGTCGTCGCCGAGCAACGGC 660
************************************************************
consensus_6086#1 CCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGC 405
consensus_6086#2 CCGACAATGCCAAAGCCACGCCCGTACCTGGAGGTAAACACTTTGGTGCAGCTGATGCGC 316
consensus_6086#0 CCGACAATGCCAAAGCCACGCCCGTACCC-----TGGAAACATTGGAGCAAATGGG---- 711
**************************** * * ** **** *** **
consensus_6086#1 TCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAG 465
consensus_6086#2 TCGCTAATGTCGCACATGGCCTGGTAGGTATGGTCGTGCTCGGCCCGCAGCTCCACGTAG 376
consensus_6086#0 -CAAAAGAGAAGCAAAT----TGGGAGGATTGGGGGAANAGGAGAAAAAACTTTCCTTTT 766
* * * *** ** *** *** *** * * * ** * *
consensus_6086#1 GACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTAC 525
consensus_6086#2 GACGTGTACAGCGACAGCAGAAAGCCGCACACGCTCAGGCCGACGAGCGCGAGCGTGTAC 436
consensus_6086#0 AATAGGGACA---ACAGGGAAGGATCATTTTCTC-------------------------- 797
* * *** **** * * * *
consensus_6086#1 GTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAG 585
consensus_6086#2 GTGCATTTGCAGTTGCCCGCCAGGATGCTCATCCTGCGTGTTGCCTAATCGCTTCCGAAG 496
consensus_6086#0 ------------------------------------------------------------
consensus_6086#1 TAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTT 645
consensus_6086#2 TAACTGATGGATCGCGCAATATGGAAAGCGTTTGTTTTGGCTACAGACACAGGGACACTT 556
consensus_6086#0 ------------------------------------------------------------
consensus_6086#1 TTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTTTGTACCAACACCAA 705
consensus_6086#2 TTACATCGCAGCGAACAGAAGCGGCAAAAAGGGAACGATCGAACTGTGTACCAACACCAA 616
consensus_6086#0 ------------------------------------------------------------
consensus_6086#1 TCGGTACACGTATATGGCGTCTCCC-ACGCGTCCGCGG------------- 742
consensus_6086#2 TCGATACACGTATATGGCGTCTCCCCGAGGGTAAGGGGTGAGATTTTGCGG 667
consensus_6086#0 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||