cluster # 6095

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Anopheles gambiae
cluster # 6095 cluster # 6095 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6095#0 length = 1199 sequences # 4

consensus_6095#1 length = 652 sequences # 1

consensusID : consensus_6095#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1199
fasta sequence

                              [CCGCCCACGCGTCCGGTCGACGTCGGTTCGGAAGTACGCCATCGCGTCGCCCCATTGAAAAAGTGTCAGGGATTTCGCGAACAGTGCACGGTTTGCGTGAAAGGATCGTGCGTGATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGGTGATAACGGGGGCCATATAAATATTATGAAAAGTAAAACTATGATTTAATCAGCGTGTTGCGAGCTGCAAGATTTGACCGACGAGTGTCCCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAAAGCGACGGAGATCGTAACAGCACGCGGGCTGAAAAGGAAATCATACAACAAGTGGCAAGTGTGTGAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAAAGTGTGTAACT-CGCCCAGCCCGACGCAGCATTCATTTCCTCGTCACATTCTCCTAATCGCAAGCGAGGAGATCGATACGCCGTGTCGCTCGCCCTGCGCCCTGTTGGAGTGTGTATGTGTGTATCGAAGTCAATCGAAGAAGCCTTGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGCTAATGTGCGAGTCGC---TCGGTGTTGTAGTGAGGCAACCGTGCATAATCACAGCGGTGATGATAAGTCTGTTCTAACCTGATCGATCTGCATCTGCCGTTTCTTTCGATGACAGCTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACCGCGTGTACAGTGAAGACGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAACCCAACCGAAGAAAGGCCCAGTGTGAAATACTCGGTGTCAAGGCGAATCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACTAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACTACACCAGATTGATACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACCATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCNACAGTTACCCCCACTC]

[+] EMBL BM579601             [CCGCCCACGCGTCCGGTCGACGTCGGTTCGGAAGTACGCCATCGCGTCGCCCCATTGAAAAAGTGTCAGGGATTTCGCGAACAGTGCACGGTTTGCGTGAAAGGATCGTGCGTGATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGGTGATAACGGGGGCCATATAAATATTATGAAAAGTAAAACTATGATTTAATCAGCGTGTTGCGAGCTGCAAGATTTGACCGACGAGTGTCCCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAAAGCGACGGAGATCGTAACAGCACGCGGGCTGAAAAGGAAATCATACAACAAGTGGCAAGTGTGTGAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAAAGTGTGTAACT CGCCCAGCCCGACGCAGCATTCATTTCCTCGTCACATTCTCCTAATCGCAAGCGAGGAGATCGATACGCCGTGTCGCTCGCCCTGCGCCCTGTTGGAGTGTGTATGTGTGTATCGAAGTCAATCGAAGAAGCCTTGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGCTAATGTGCGAGTCGC   TCGGTGTTGTAGTGAGGCAACCGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS08KCP             [                                                                                                                                                                                                                                    CCGACGAGTGT CCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAAAGCGACGGAGATCGTAACAGCACGCGGGCTGAAAGGGAAATCATACAACAAGTGGCAAGTGTGTTAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAAAGTGTGTGACTGCGCCCAGCCCGACGCAGCATgtgc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX620060             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGCTAATGTGCGAGTCGCGAGTCGGTGTTGTAGTGAGGCAACCGTGCATAATCACAGCGGTGATGATAAGTCTGTTCTAACCTGATCGATCTGCATCTGCCGTTTCTTTCGATGACAGCTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACCGCGTGTACAGTGAAGACGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAACCCAACCGAAGAAAGGCCCAGTGTGAAATACTCGGTGTCAAGGCGAATCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACTAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACTACACCAGATTGATACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACCATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCNACAGTTACCCCCACTC]
[-] EMBL CNS08KCQ             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCAGACGAAACGGGAAGCGCATTTTTTAATAGCGCCTTTGTCGTGAACCCAACCGAAGAAAGGCCCAGTGTGAAATACTCGGTGTCAAGGCGAATCATCGACACAATAAAGATCCATCCCTCCACACGCAGGAGAGACTAGTCTTTTTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGG                                                                                                                                                                                                                ]




>consensus_6095#0
CCGCCCACGCGTCCGGTCGACGTCGGTTCGGAAGTACGCCATCGCGTCGCCCCATTGAAA
AAGTGTCAGGGATTTCGCGAACAGTGCACGGTTTGCGTGAAAGGATCGTGCGTGATTCTG
CTGCACCCGAGTTGCAACGTGCAGTTAAAGGTGATAACGGGGGCCATATAAATATTATGA
AAAGTAAAACTATGATTTAATCAGCGTGTTGCGAGCTGCAAGATTTGACCGACGAGTGTC
CCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAA
AGCGACGGAGATCGTAACAGCACGCGGGCTGAAAAGGAAATCATACAACAAGTGGCAAGT
GTGTGAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAA
AGTGTGTAACTCGCCCAGCCCGACGCAGCATTCATTTCCTCGTCACATTCTCCTAATCGC
AAGCGAGGAGATCGATACGCCGTGTCGCTCGCCCTGCGCCCTGTTGGAGTGTGTATGTGT
GTATCGAAGTCAATCGAAGAAGCCTTGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGC
TAATGTGCGAGTCGCTCGGTGTTGTAGTGAGGCAACCGTGCATAATCACAGCGGTGATGA
TAAGTCTGTTCTAACCTGATCGATCTGCATCTGCCGTTTCTTTCGATGACAGCTGTTCGC
TGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACCGCGTGTACAGTGAAGACGAAA
CGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAACCCAACCGAAGAAAGGCCCAGTG
TGAAATACTCGGTGTCAAGGCGAATCATCGACACAATAAAGATCCATCCCTCCACACGCA
GCAGAGACTAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCG
AATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACTACACCAG
ATTGATACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACCATGTCGTCTGGAACGT
TCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTC
AGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCNACAGTTACCCCCACTC

consensusID : consensus_6095#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [GATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGTTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACAGCGTGTACAGTGAAGTCGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAAAGTGAACCCAACCGAAGAAAGGCCCAGTGTGTAATACTCGGTGTAGTGGCGAATCTGCTCGGGAGCTACCACATACAGAAAAGGCACTGTCTTCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACCAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACATACACCAGATTGAAACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACAATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCAACAGTTACCCCCACTCAAAGTTGATTGTTCCAGCTTAGAACAGGAGGAGCTGNTCATTCGCAAGCTACGACAATGCTGCGTGTCGTTCGATTTTATGG]

[+] EMBL BX626428             [GATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGTTGTTCGCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACAGCGTGTACAGTGAAGTCGAAACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAAAGTGAACCCAACCGAAGAAAGGCCCAGTGTGTAATACTCGGTGTAGTGGCGAATCTGCTCGGGAGCTACCACATACAGAAAAGGCACTGTCTTCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACCAGTCTTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACATACACCAGATTGAAACAGAAAGGGCACAAAACTGCATCCTGCCGATCAAACAATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAGGATGTGGAGCTGCAACAGTTACCCCCACTCAAAGTTGATTGTTCCAGCTTAGAACAGGAGGAGCTGNTCATTCGCAAGCTACGACAATGCTGCGTGTCGTTCGATTTTATGG]




>consensus_6095#1
GATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGTTGTTCGCTGAAAGGTTTCGCCA
TCAAAGCCCGGAAAGTGTTAGACAGCGTGTACAGTGAAGTCGAAACGGGAAGCGCATATC
TCACTAGCGCGTATGTCGTGAAAGTGAACCCAACCGAAGAAAGGCCCAGTGTGTAATACT
CGGTGTAGTGGCGAATCTGCTCGGGAGCTACCACATACAGAAAAGGCACTGTCTTCATCG
ACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACCAGTCTTTCTGTGGCAGATTTT
GTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAGAAGCAACTAGAGCGAGG
GCGAGCCTCTCTAGTACTATACATACACCAGATTGAAACAGAAAGGGCACAAAACTGCAT
CCTGCCGATCAAACAATGTCGTCTGGAACGTTCGTAGATCGAATCGATCCGTTCGCCAAA
CGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGCGGTACAGGAATTCACAG
GATGTGGAGCTGCAACAGTTACCCCCACTCAAAGTTGATTGTTCCAGCTTAGAACAGGAG
GAGCTGNTCATTCGCAAGCTACGACAATGCTGCGTGTCGTTCGATTTTATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6095#0      CCGCCCACGCGTCCGGTCGACGTCGGTTCGGAAGTACGCCATCGCGTCGCCCCATTGAAA 60
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      AAGTGTCAGGGATTTCGCGAACAGTGCACGGTTTGCGTGAAAGGATCGTGCGTGATTCTG 120
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      CTGCACCCGAGTTGCAACGTGCAGTTAAAGGTGATAACGGGGGCCATATAAATATTATGA 180
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      AAAGTAAAACTATGATTTAATCAGCGTGTTGCGAGCTGCAAGATTTGACCGACGAGTGTC 240
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      CCTAGTGTATTAGTAGGTATGATTTTGTGTTAACGCGTTGTCGCATAAAAGCGCCGACAA 300
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      AGCGACGGAGATCGTAACAGCACGCGGGCTGAAAAGGAAATCATACAACAAGTGGCAAGT 360
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      GTGTGAAAACCATTGATATATGTAGGTGTTTCCTGTGGAAAAAATACGACACGAAAAAAA 420
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      AGTGTGTAACTCGCCCAGCCCGACGCAGCATTCATTTCCTCGTCACATTCTCCTAATCGC 480
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      AAGCGAGGAGATCGATACGCCGTGTCGCTCGCCCTGCGCCCTGTTGGAGTGTGTATGTGT 540
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      GTATCGAAGTCAATCGAAGAAGCCTTGGGCAGCCTTAGCATCATTGTTGCATCCGTCAGC 600
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      TAATGTGCGAGTCGCTCGGTGTTGTAGTGAGGCAACCGTGCATAATCACAGCGGTGATGA 660
consensus_6095#1      ------------------------------------------------------------
                                                                                  

consensus_6095#0      TAAGTCTGTTCTAACCTGATCGATCTGCATCTG--CCGTTTCTTTCGATGACAGCTGTTC 718
consensus_6095#1      -----------------GATTCTGCTGCACCCGAGTTGCAACGTGCAGTTAAAGTTGTTC 43
                                       ***    ***** * *    *   * * *  * * ** *****

consensus_6095#0      GCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACCGCGTGTACAGTGAAGACGA 778
consensus_6095#1      GCTGAAAGGTTTCGCCATCAAAGCCCGGAAAGTGTTAGACAGCGTGTACAGTGAAGTCGA 103
                      **************************************** *************** ***

consensus_6095#0      AACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAA------CCCAACCGAAGAAAG 832
consensus_6095#1      AACGGGAAGCGCATATCTCACTAGCGCGTATGTCGTGAAAGTGAACCCAACCGAAGAAAG 163
                      ***************************************      ***************

consensus_6095#0      GCCCAGTGTGAAATACTCGGTGTCAAGGCGAATC-------------------------- 866
consensus_6095#1      GCCCAGTGTGTAATACTCGGTGTAGTGGCGAATCTGCTCGGGAGCTACCACATACAGAAA 223
                      ********** ************   ********                          

consensus_6095#0      -------------ATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACTAGTC 913
consensus_6095#1      AGGCACTGTCTTCATCGACACAATAAAGATCCATCCCTCCACACGCAGCAGAGACCAGTC 283
                                   ****************************************** ****

consensus_6095#0      TTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAG 973
consensus_6095#1      TTTCTGTGGCAGATTTTGTTGTGCCCAGAAAGCGAGACAAAAGCGCGAATAAGGCAGGAG 343
                      ************************************************************

consensus_6095#0      AAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATAC-TACACCAGATTGATACAGAA 1032
consensus_6095#1      AAGCAACTAGAGCGAGGGCGAGCCTCTCTAGTACTATACATACACCAGATTGAAACAGAA 403
                      *************************************** ************* ******

consensus_6095#0      AGGGCACAAAACTGCATCCTGCCGATCAAACCATGTCGTCTGGAACGTTCGTAGATCGAA 1092
consensus_6095#1      AGGGCACAAAACTGCATCCTGCCGATCAAACAATGTCGTCTGGAACGTTCGTAGATCGAA 463
                      ******************************* ****************************

consensus_6095#0      TCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGC 1152
consensus_6095#1      TCGATCCGTTCGCCAAACGTTCGCTCAAGAAGAAAAGCAAAAAATCTCAGGGCTCATCGC 523
                      ************************************************************

consensus_6095#0      GGTACAGGAATTCACAGGATGTGGAGCTGCNACAGTTACCCCCACTC------------- 1199
consensus_6095#1      GGTACAGGAATTCACAGGATGTGGAGCTGCAACAGTTACCCCCACTCAAAGTTGATTGTT 583
                      ****************************** ****************             

consensus_6095#0      ------------------------------------------------------------
consensus_6095#1      CCAGCTTAGAACAGGAGGAGCTGNTCATTCGCAAGCTACGACAATGCTGCGTGTCGTTCG 643
                                                                                  

consensus_6095#0      ---------
consensus_6095#1      ATTTTATGG 652