cluster # 6105

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Anopheles gambiae
cluster # 6105 cluster # 6105 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6105#0 length = 654 sequences # 4

consensus_6105#1 length = 467 sequences # 1

consensusID : consensus_6105#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 654
fasta sequence

                              [TCCGAAAACATTAAAAAATGACCGACTAATTTGAGCGAAAAAAAGCGCTTATTTTGTTTCTAGTCCTAGGAAAGGGAGCATAAACTTCCAAACCTATACCAGTATGTCGTTTGTAGTGGGAAGGTTTCTGTGCCACCGTAAAGTATCTCGGTTATTTAAACAAATCATTCAATCTCCCCTGAGCCCATCAAGCATTGCATCACAGACCTTTGGTTCGGGCGGACAGCGCGGTCTTTTGAACCGAAGGCTCCTGAGCACAACGGCTGTCGGCAAAGCACAGCAGAAGGAGGAACACTGCAATGTGGGTACTATCGGCCATGTGGACCACGGCAAAACGACGCTCACCGCTGCCATCACCAA-GGTGCTTT--CGAAGGATGGCAACACAAGCTTCATTTCCTAC-GACCA-GATT-GAT-CGAGCGCCGGAGGAAAAGGCAAGAGGCATAACGATC-AATGCGG-CCCACATC-GGGTACAAGACGAGCAAG-CGA-CACTATG-CCCACAC-GGACTGTCC-GGGACATGCGGATTACGTGAAGAACATGATATCCGGAGCGTCGCAGATGGACGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCCGCAAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAAATCG]

[+] EMBL BM596655             [ CCGAAAACATTAAAAAATGACCGACTAATTTGAGCGAAAAAAAGCGCTTATTTTGTTTCTAGTCCTAGGAAAGGGAGCATAAACTTCCAAACCTATACCAGTATGTCGTTTGTAGTGGGAAGGTTTCTGTGCCACCGTAAAGTATCTCGGTTATTTAAACAAATCATTCAATCTCCCCTGAGCCCATCAAGCATTGCATCACAGACCTTTGGTTCGGGCGGACAGCGCGGTCTTTTGAACCGAAGGCTCCTGAGCACAACGGCTGTCGGCAAAGCACAGCAGAAGGAGGAACACTGCAATGTGGGTACTATCGGCCATGTGGACCACGGCAAAACGACGCTCACCGCTGCCATCACCAA GGTGCTTT  CGAAGGATGGCAACACAAGCTTCATTTCCTAC GACCA GATT GAT CGAGCGCCGGAGGAAAAGGCAAGAGGCATAACGATC AATGCGG CCCACATC GGGTACAAGACGAGCAAG CGA CACTATG CCCACAC GGACTGTCC GGGACATGCGGATTACGTGAAGAACATGATATCCGGAGCGTCGCAGATGGACGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCCGCAAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAAATCG]
[+] EMBL CNS08LKP             [taccAAAACATTAAAAAATGACCGACTAATTTGAGCGAAAAAAAGCGCTTATTTTGTTTCTAGTCCTAGGAAAGGGAGCATAAACTTCCGAACCTATACCAGTATGCCGTTTGTAGTGGGAAGGTTTCTGTGCCACCGTAAAGTATCTCGGTTATTTAAACAAATCATTCAATCTCCCCTGAGCCCATCAAGCATTGCATCACAGACCTTTGGTTCGGGCGGACAGCGCGGTCTTTTGAACCGAA GCTCCTGAGCACAACGGCTGTCGGCAAAGCACAGCAGAAGGAGGAACACTGCAATGTGGGTACTATTGGCCATGTGGACCACGGCAAAACGACGCTCACCGCTGCCATCACCAA GGTGCTTT  CGAAGGATGGCAACACAAGCTTCATTTCCTACAGA CA GATTAGAT CGAG                                                                                                                                                                                                                                                      ]
[+] EMBL BM625968             [         ccgAAAAAATGACCGACTAATTTGAGCGAAAAAAAGCGCTTATTTTGTTTCTAGTCCTAGGAAAGGGAGCATAAACTTCCAAACCTATACCAGTATGTCGTTTGTAGTGGGAAGGTTTCTGTGCCACCGTAAAGTATCTCGGTTATTTAAACAAATCATTCAATCTCCCCTGAGCCCATCAAGCATTGCATCACAGACCTTTGGTTCGGGCGGACAGCGCGGTCTTTTGAACCGAAGGCTCCTGAGCACAACGGCTGTCGGCAAAGCACAGCAGAAGGAGGAACACTGCAATGTGGGTACTATCGGCCATGTGGACCACGGCAAAACGACGCTCACCGCTGCCATCACCAA GGTGCTTT  CGAAGGATGGCAACACAAGCTTCATTTCCTAC GACCA GATT GAT CGAGCGCCGGAGGAAAAGGCAAGAGGCATAACGATC AATGCGG CCCACATC GGGTACAAGACGAGCAAG CGA CACTATG CCCAC                                                                                                                                                                ]
[+] EMBL BX619834             [                                    aacnnAAAGCGCTTATTTTGTTTCTAGTCCTAGGAAAGGGAGCATAAACTTCCGAACCTATACCAGTATGCCGTTTGTAGTGGGAAGGTTTCTGTGCCACCGTAAAGTATCTCGGTTATTTAAACAAATCATTCAATCTCCCCTGAGCCCATCAAGCATTGCATCACAGACCTTTGGTTCGGGCGGACAGCGCGGTCTTTTGAACCGAAGGCTCCTGAGCACAACGGCTGTCGGCAAAGCACAGCAGAAGGAGGAACACTGCAATGTGGGTACTATTGGCCATGTGGACCACGGCAAAACGACGCTCACCGCTGCCATCACCAAGGGTGCTTTTNCGAAGGATGGCAACACAAGCTTCATTTCCTAC GACCANGATT GATCCGAGCGCCGGAGGAAAAGGCAAGAGGCATAACGATCAAATGCGGCCCCACATCGGGGTACCAGACGAGCAAGCCGACCACTATGCCCCACACGGGACTGTCCNGGGCCATGCGGATTACGTGAAGAACATGATATCCGGAGCGTCGCANATGGACGGCNCAATAt                                                                                     ]




>consensus_6105#0
TCCGAAAACATTAAAAAATGACCGACTAATTTGAGCGAAAAAAAGCGCTTATTTTGTTTC
TAGTCCTAGGAAAGGGAGCATAAACTTCCAAACCTATACCAGTATGTCGTTTGTAGTGGG
AAGGTTTCTGTGCCACCGTAAAGTATCTCGGTTATTTAAACAAATCATTCAATCTCCCCT
GAGCCCATCAAGCATTGCATCACAGACCTTTGGTTCGGGCGGACAGCGCGGTCTTTTGAA
CCGAAGGCTCCTGAGCACAACGGCTGTCGGCAAAGCACAGCAGAAGGAGGAACACTGCAA
TGTGGGTACTATCGGCCATGTGGACCACGGCAAAACGACGCTCACCGCTGCCATCACCAA
GGTGCTTTCGAAGGATGGCAACACAAGCTTCATTTCCTACGACCAGATTGATCGAGCGCC
GGAGGAAAAGGCAAGAGGCATAACGATCAATGCGGCCCACATCGGGTACAAGACGAGCAA
GCGACACTATGCCCACACGGACTGTCCGGGACATGCGGATTACGTGAAGAACATGATATC
CGGAGCGTCGCAGATGGACGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCC
GCAAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAAATCG

consensusID : consensus_6105#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [AGCAGATCGCACGAGGTNGAACACAAGCTTCATTTCCTACGACAGATTGATCGAGCGCCGGAGGAAAAGGCAAGAGGCATAACGATCAATGCGGCCCACATCGGGTACAAGACGAGCAAGCGACACTATGCCCACACGGACTGTCCGGGCCATGCGGATTACGTGAAGAACATGATATCCGGAGCGTCGCAGATGGATGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCCGAAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAATCGTCGTGTTCATTAACAAAGCCGACCAGGTAGATAACGAAGTGCTGGAACTTGGTCGAGATCGAGCTGCGGGAACTGTTGAGCTATTTTGGCTTCGACGGCGTGGAGAGCCCCATCATCGTCGGCTCGGCACTGCTCGCACTGCAGGGCGATCAGTCGGAGCTGGGCGAACCGTCGAT]

[+] EMBL AL697241             [AGCAGATCGCACGAGGTNGAACACAAGCTTCATTTCCTACGACAGATTGATCGAGCGCCGGAGGAAAAGGCAAGAGGCATAACGATCAATGCGGCCCACATCGGGTACAAGACGAGCAAGCGACACTATGCCCACACGGACTGTCCGGGCCATGCGGATTACGTGAAGAACATGATATCCGGAGCGTCGCAGATGGATGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCCGAAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAATCGTCGTGTTCATTAACAAAGCCGACCAGGTAGATAACGAAGTGCTGGAACTTGGTCGAGATCGAGCTGCGGGAACTGTTGAGCTATTTTGGCTTCGACGGCGTGGAGAGCCCCATCATCGTCGGCTCGGCACTGCTCGCACTGCAGGGCGATCAGTCGGAGCTGGGCGAACCGTCGAT]




>consensus_6105#1
AGCAGATCGCACGAGGTNGAACACAAGCTTCATTTCCTACGACAGATTGATCGAGCGCCG
GAGGAAAAGGCAAGAGGCATAACGATCAATGCGGCCCACATCGGGTACAAGACGAGCAAG
CGACACTATGCCCACACGGACTGTCCGGGCCATGCGGATTACGTGAAGAACATGATATCC
GGAGCGTCGCAGATGGATGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCCG
AAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAATCGTCGTGTTCA
TTAACAAAGCCGACCAGGTAGATAACGAAGTGCTGGAACTTGGTCGAGATCGAGCTGCGG
GAACTGTTGAGCTATTTTGGCTTCGACGGCGTGGAGAGCCCCATCATCGTCGGCTCGGCA
CTGCTCGCACTGCAGGGCGATCAGTCGGAGCTGGGCGAACCGTCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6105#0      TCCGAAAACATTAAAAAATGACCGACTAATTTGAGCGAAAAAAAGCGCTTATTTTGTTTC 60
consensus_6105#1      ------------------------------------------------------------
                                                                                  

consensus_6105#0      TAGTCCTAGGAAAGGGAGCATAAACTTCCAAACCTATACCAGTATGTCGTTTGTAGTGGG 120
consensus_6105#1      ------------------------------------------------------------
                                                                                  

consensus_6105#0      AAGGTTTCTGTGCCACCGTAAAGTATCTCGGTTATTTAAACAAATCATTCAATCTCCCCT 180
consensus_6105#1      ------------------------------------------------------------
                                                                                  

consensus_6105#0      GAGCCCATCAAGCATTGCATCACAGACCTTTGGTTCGGGCGGACAGCGCGGTCTTTTGAA 240
consensus_6105#1      ------------------------------------------------------------
                                                                                  

consensus_6105#0      CCGAAGGCTCCTGAGCACAACGGCTGTCGGCAAAGCACAGCAGAAGGAGGAACACTGCAA 300
consensus_6105#1      ------------------------------------------------------------
                                                                                  

consensus_6105#0      TGTGGGTACTATCGGCCATGTGGACCACGGCAAAACGACGCTCACCGCTGCCATCACCAA 360
consensus_6105#1      -----------------------------------------------------------A 1
                                                                                 *

consensus_6105#0      GGTGCTTTCGAAGGATGGCAACACAAGCTTCATTTCCTACGACCAGATTGATCGAGCGCC 420
consensus_6105#1      GCAGATCGCACGAGGTNG-AACACAAGCTTCATTTCCTACGAC-AGATTGATCGAGCGCC 59
                      *  * *  *    * * * ************************ ****************

consensus_6105#0      GGAGGAAAAGGCAAGAGGCATAACGATCAATGCGGCCCACATCGGGTACAAGACGAGCAA 480
consensus_6105#1      GGAGGAAAAGGCAAGAGGCATAACGATCAATGCGGCCCACATCGGGTACAAGACGAGCAA 119
                      ************************************************************

consensus_6105#0      GCGACACTATGCCCACACGGACTGTCCGGGACATGCGGATTACGTGAAGAACATGATATC 540
consensus_6105#1      GCGACACTATGCCCACACGGACTGTCCGGGCCATGCGGATTACGTGAAGAACATGATATC 179
                      ****************************** *****************************

consensus_6105#0      CGGAGCGTCGCAGATGGACGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCC 600
consensus_6105#1      CGGAGCGTCGCAGATGGATGGCGCAATACTGGTCGTGGCGGCAACCGACGGACAAATGCC 239
                      ****************** *****************************************

consensus_6105#0      GCAAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAA--ATCG---- 654
consensus_6105#1      G-AAACGCGCGAACATTTACTGCTGGCCCGGCAGGTTGGCGTTAGCAAAATCGTCGTGTT 298
                      * ************************************************   ***    

consensus_6105#0      ------------------------------------------------------------
consensus_6105#1      CATTAACAAAGCCGACCAGGTAGATAACGAAGTGCTGGAACTTGGTCGAGATCGAGCTGC 358
                                                                                  

consensus_6105#0      ------------------------------------------------------------
consensus_6105#1      GGGAACTGTTGAGCTATTTTGGCTTCGACGGCGTGGAGAGCCCCATCATCGTCGGCTCGG 418
                                                                                  

consensus_6105#0      -------------------------------------------------
consensus_6105#1      CACTGCTCGCACTGCAGGGCGATCAGTCGGAGCTGGGCGAACCGTCGAT 467