cluster # 6108

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Anopheles gambiae
cluster # 6108 cluster # 6108 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6108#0 length = 649 sequences # 4

consensus_6108#1 length = 547 sequences # 1

consensusID : consensus_6108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 649
fasta sequence

                              [CCGCTGAGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC-GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCCTCTGCACGCCCTTTTTGTAATCACAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGTGGGCCCGGG]

[+] EMBL BM577808             [CCGCTGAGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAA                                                                                                    ]
[+] EMBL BM583088             [    ccgGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAAC                                                                                                  ]
[+] EMBL BM609280             [           ccgGCAACGAGGTCGCACTGGTCGTTGTTTTGTTTGGGCCTTCCGTGGGCGAAAGAAATTAGCCGGATATTTTGATAATTAAAGGCCGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCACGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTC GGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTCCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCCGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAAT                                                                                                        ]
[+] EMBL CNS09QIH             [                                                                                                 CGCCGCGATGGACGTACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCCTCTGCACGCCCTTTTTGTAATCACAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGTGGGCCCGGG]




>consensus_6108#0
CCGCTGAGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTGGGCCTTCCGTGGG
CGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCGA
GACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGG
TCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGAC
TGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGACG
TGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCGT
ACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGACG
CGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGA
TCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGA
GAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCCTCTGCACGCCCTTTTTG
TAATCACAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGTGGGCCCGGG

consensusID : consensus_6108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [GCTCTAAAGCTGGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATTTTCATAATTAAAGGCCGCCGCGATGGACGAACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACAACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCCACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCC]

[-] EMBL CNS09QII             [GCTCTAAAGCTGGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATTTTCATAATTAAAGGCCGCCGCGATGGACGAACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACAACTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCCACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCC]




>consensus_6108#1
GCTCTAAAGCTGGCGGAATTCCTCGAGCACTGTTGGCCTACTGGATTTTCATAATTAAAG
GCCGCCGCGATGGACGAACTCTCGAGACCGGCGGAAGAATTCGTCAACGATGGCACGGTG
GAGGAGCTGTGGGCTGTGAAGGCGGTCGACCATGCCGAGGTACACTTCAATCTCCTGTGC
AGTGTCGATCCGCGCCTGCTACAACTGACTCCGTACGATGACGAGATCTACGAGCAGTTC
CGGCGGATGTTCCCCCACATGGACGTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCG
GACGGCAAAACGAAATGGAGAGCGTACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGC
TACGGCACGCTGTGCGCTCGGACGCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGG
TGGTGCGGATCCAGTTCTGGGCGATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATA
TCGTACGGATGAAGTTCCGCGGGAGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAA
CTCCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6108#0      CCGCTGAGCAGCGAGCAACGAGGTCGCACTGGACGTTGTTTTGTTTG-GGCCTTCCGTGG 59
consensus_6108#1      ----------------------------------GCTCTAAAGCTGGCGGAATTCCTCGA 26
                                                        * * *   * * * **  ****  * 

consensus_6108#0      GCGAAAGAAATTAGCCGGATATTTTCATAATTAAAGGCCGCCGCGATGGACGTACTCTCG 119
consensus_6108#1      GCACTGTTGGCCTACTGGAT--TTTCATAATTAAAGGCCGCCGCGATGGACGAACTCTCG 84
                      **            * ****  ****************************** *******

consensus_6108#0      AGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCG 179
consensus_6108#1      AGACCGGCGGAAGAATTCGTCAACGATGGCACGGTGGAGGAGCTGTGGGCTGTGAAGGCG 144
                      ************************************************************

consensus_6108#0      GTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACGA 239
consensus_6108#1      GTCGACCATGCCGAGGTACACTTCAATCTCCTGTGCAGTGTCGATCCGCGCCTGCTACAA 204
                      ********************************************************** *

consensus_6108#0      CTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCGACATGGAC 299
consensus_6108#1      CTGACTCCGTACGATGACGAGATCTACGAGCAGTTCCGGCGGATGTTCCCCCACATGGAC 264
                      *************************************************** ********

consensus_6108#0      GTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCG 359
consensus_6108#1      GTGCGGGTGGTGAACGAAAGCGAGCTGAAAAGCTCGGACGGCAAAACGAAATGGAGAGCG 324
                      ************************************************************

consensus_6108#0      TACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTGCTGCGCTCGGAC 419
consensus_6108#1      TACATGGAGAAGTTCAACCGGTTGGAAGATTTCAGCTACGGCACGCTG-TGCGCTCGGAC 383
                      ************************************************ ***********

consensus_6108#0      GCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCG 479
consensus_6108#1      GCGGAGGAAGAATTTCGGCCGGAAAACGCCATCCTGGTGGTGCGGATCCAGTTCTGGGCG 443
                      ************************************************************

consensus_6108#0      ATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGG 539
consensus_6108#1      ATCGAGGTGGCCAGAAACCGGGAGGGGCATAACGATATCGTACGGATGAAGTTCCGCGGG 503
                      ************************************************************

consensus_6108#0      AGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCCTCTGCACGCCCTTTTT 599
consensus_6108#1      AGAAATGTAAACAGAGATGTGGAATAAAGTCGCCGAACTCCTCC---------------- 547
                      ********************************************                

consensus_6108#0      GTAATCACAAAAAAAAAAAAAAAAGGCCACATGTGCTCGGTGGGCCCGGG 649
consensus_6108#1      --------------------------------------------------