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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence
[ACCATGCTCGAGCAGAATCCCCACGAGTTAAAGTAGGATTTTTTAGTGTCATAATCTGCGAGCTGTAATTGTAAAACGTTGTNTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTAGCTGGAGTCCGTGACGGAGGTCAAGAACGAGTACNCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCACTGCGCTACCAGGTTGCGAAACATGACAGCAAACGTTCCGGGGGCTGAACGAACGAAAATAGGAATCCAACTACCATACCGGTGACACCTATGTGCCGCCACCAGGNCGGCTCGTCCTTNCCGCAAATGCCAGGGCACGAANGCGGCGGTTGACACCCCAACAAATCCANCCCCGGCACCCGGCACGCAAGTATTGACTNGGNCCCCAAAACCAAGAACCCCTTATAACCACAGGGTGGACACANTNGCATTCCCAATGGGAACCCAGGANAGCNCGTTTGCCCNTGCGGTCNNAACTTGGCTTCGCACAAGGACGCTGGCGNNCNTCCTATNGCCCGNAAAGAACGACGAAGAAGAANCATTCCGGTCCGTACTAACCTAACTCACTTCGTTAAGCGTGCGACAACACCGCACGCCTCAGTTGCCCGGGAACCCTTTGAGGTTGNTACACACNTATGGGAACAAATATGACACCCCTGGGANACTGGCTTCATGGAAC]
[+] EMBL AL696373 [ACCATGCTCGAGCAGAATCCCCACGAGTTAAAGTAGGATTTTTTAGTGTCATAATCTGCGAGCTGTAATTGTAAAACGTTGTNTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTAGCTGGAGTCCGTGACGGAGGTCAAGAACGAGTACNCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCACTGCGCTACCAGGTTGCGAAACATGACAGCAAACGTTCCGGGGGCTGAACGAACGAAAATAGGAATCCAACTACCATACCGGTGACACCTATGTGCCGCCACCAGGNCGGCTCGTCCTTNCCGCAAATGCCAGGGCACGAANGCGGCGGTTGACACCCCAACAAATCCANCCCCGGCACCCGGCACGCAAGTATTGACTNGGNCCCCAAAACCAAGAACCCCTTATAACCACAGGGTGGACACANTNGCATTCCCAATGGGAACCCAGGANAGCNCGTTTGCCCNTGCGGTCNNAACTTGGCTTCGCACAAGGACGCTGGCGNNCNTCCTATNGCCCGNAAAGAACGACGAAGAAGAANCATTCCGGTCCGTACTAACCTAACTCACTTCGTTAAGCGTGCGACAACACCGCACGCCTCAGTTGCCCGGGAACCCTTTGAGGTTGNTACACACNTATGGGAACAAATATGACACCCCTGGGANACTGGCTTCATGGAAC]
consensusID : consensus_6112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 789 fasta sequence
[GTGCGCTATTAAAGTAGGAATTTTTAGTGTGATAATCTGCGAGTGGAATTGTAAAACGTTGTTTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTCGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCGCTGCGCTACCAGTTGCGAAACATGACGCAAACGTTCCGGGGGCTGAAGAAGAAAATTGAATCCAACTCCATACCGGTGCACCTTGTGCCGCCACCGGCCGGCTCGTCTTCCCGCAATGCAGGGCAC-GAAGCGCGTGACACCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGACCTTACCGTGCACGATCACGGACCGAGGCGTGCCGCGGGCATGCTGAAGAGTGGCAAACGCACGCTCGTGCGGACCTTGCGTGCACTCTATGGACAATTTGTACCTGACTTGGTTTGGACCGTATTTTACCTAACACATTGGAGAACGTTGCACGTTAACTACTGCAAACTGTAGCAGGAATCGGANGGGGAGGGGGGACATCCTTGAATATTACCCAACGGGGGAAGGAATTGATCAGAGGAAGCAAATTCATACTCAAGCATGCACAGCACGAAGATACGCTGC]
[+] EMBL BX622808 [GTGCGCTATTAAAGTAGGAATTTTTAGTGTGATAATCTGCGAGTGGAATTGTAAAACGTTGTTTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTCGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCGCTGCGCTACCAGTTGCGAAACATGACGCAAACGTTCCGGGGGCTGAAGAAGAAAATTGAATCCAACTCCATACCGGTGCACCTTGTGCCGCCACCGGCCGGCTCGTCTTCCCGCAATGCAGGGCAC GAAGCGCGTGACTCCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGACCTTACCGTGCACGATCACGGACCGAGGCGTGCCGCGGGCATGCTGAAGAGTGGCAAACGCACGCTCGTGCGGACCTTGCGTGCACTCTATGGACAATTTGTACCTGACTTGGTTTGGACCGTATTTTACCTAACACATTGGAGAACGTTGCACGTTAACTACTGCAAACTGTAGCAGGAATCGGANGGGGAGGGGGGACATCCTTGAATATTACCCAACGGGGGAAGGAATTGATCAGAGGAAGCAAATTCATACTCAAGCATGCACAGCACGAAGATACGCTGC]
[+] EMBL BX623813 [ TCTGCGAGTGGAATTGTAAAACGTTGTTTTTAATGTAGTAACCATGATCTCGAACGCTTTGTGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTGGAGTCCGTGACGGAGGTCAAGAACGAGTACCANAACCTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGAAATGACCAACTCACTGCGCTACCAGTTGCGAAACATGACGCAAACGTTCCGGGGGCTGAAGAAGAAAATTGAATCCAACTCCATACCGGTGCACCTTGTGCCGCCACCGGCCGGCTCGTCTTCCCGCAATGCAGGGCAC GAAGCGCGTGACACCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGACCTTACCGTGCACGATCACGGACCGAG ]
[+] EMBL BX623676 [ TTGTGCCNCCACCGGTCGGCTCTTCTTCCCGCAATGCAGGGCACTGAAGCGCGTGACACCCAACATCACCCGCACCCGNCGNATCTGCTGCCCCAACCAGACCTTACC ]
consensusID : consensus_6112#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[TATTTGGGANAAAGTTTNGGTNAGGAATNAGCTTAGTGCGCTATTTAAGGTAAAGGNGCNAAAAACCCTTTTTTTACTCTAGTAGTAGATAATCTGNGAGTGGAATTGTAACAACGTNNGTTTTTAATGTAGTAACCATGATCTCGAACGCTCTTGTAGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAAAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTTGGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGACAATGACCAAACTTCCACTGGGCNCGGCTACCAGTTGCGACATACATGACGCAAACCGTTCCGGTGAGGCTGAAGGAAGAAAATTGAATCCAAACTACCATACCGGTGGCACCTTGTGCCGCGCACCGGC]
[+] EMBL AL930964 [TATTTGGGANAAAGTTTNGGTNAGGAATNAGCTTAGTGCGCTATTTAAGGTAAAGGNGCNAAAAACCCTTTTTTTACTCTAGTAGTAGATAATCTGNGAGTGGAATTGTAACAACGTNNGTTTTTAATGTAGTAACCATGATCTCGAACGCTCTTGTAGCGATCTGGAGAAATGTGTGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGGATGTGGAGCGCAATCTGGACGAAAACGAGCTAAAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTTGGAGTCCGTGACGGAGGTCAAGAACGAGTACCAGAACTGCGCAAAGATTTGCAGGAGGTGCAGCAGCTGCAGAAGGACAATGACCAAACTTCCACTGGGCNCGGCTACCAGTTGCGACATACATGACGCAAACCGTTCCGGTGAGGCTGAAGGAAGAAAATTGAATCCAAACTACCATACCGGTGGCACCTTGTGCCGCGCACCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6112#1 -----------------------------------GTGCGCTATT----------AAAGT 15
consensus_6112#2 TATTTGGGANAAAGTTTNGGTNAGGAATNAGCTTAGTGCGCTATTTA---AGGTAAAGGN 57
consensus_6112#0 --------------------------ACCATGCTCGAGCAGAATCCCCACGAGTTAAAGT 34
* ** ** ** *
consensus_6112#1 AGGAA--------TTTTTAGTGT-------GATAATCTGCGAG-TGGAATTGTAA-AACG 58
consensus_6112#2 GCNAAAAACCCTTTTTTTACTCTAGTAGTAGATAATCTGNGAG-TGGAATTGTAACAACG 116
consensus_6112#0 AGGAT--------TTTTTAGTGT-------CATAATCTGCGAGCTGTAATTGTAA-AACG 78
* ****** * * ******** *** ** ******** ****
consensus_6112#1 TTG-TTTTTAATGTAGTAACCATGATCTCGAACGCT-TTGT-GCGATCTGGAGAAATGTG 115
consensus_6112#2 TNNGTTTTTAATGTAGTAACCATGATCTCGAACGCTCTTGTAGCGATCTGGAGAAATGTG 176
consensus_6112#0 TTG-TNTTTAATGTAGTAACCATGATCTCGAACGCT-TTGT-GCGATCTGGAGAAATGTG 135
* * ****************************** **** ******************
consensus_6112#1 TGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGG-ATGTGGAGCGC 174
consensus_6112#2 TGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGGGATGTGGAGCGC 236
consensus_6112#0 TGTACACGGCCGGAGTCCAGCTCGATTCACTGGCCGTGAAACTGACGG-ATGTGGAGCGC 194
************************************************ ***********
consensus_6112#1 AATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTCG-A 233
consensus_6112#2 AATCTGGACGAAAACGAGCTAAAATCGATCGAAAATGAGTCAGTGATGGAGTTGCTTGGA 296
consensus_6112#0 AATCTGGACGAAAACGAGCTAGAATCGATCGAAAATGAGTCAGTGATGGAGTTAGCTGGA 254
********************* ******************************* * *
consensus_6112#1 GTCCGTGACGGAGGTCAAGAACGAGTACC-AGAACCTGCGCAAAGATTTGCAGGAGGTGC 292
consensus_6112#2 GTCCGTGACGGAGGTCAAGAACGAGTACC-AGAAC-TGCGCAAAGATTTGCAGGAGGTGC 354
consensus_6112#0 GTCCGTGACGGAGGTCAAGAACGAGTACNCAGAACCTGCGCAAAGATTTGCAGGAGGTGC 314
**************************** ***** ************************
consensus_6112#1 AGCAGCTGCAGAAGGA-AATGACCAACTCGCTGC--------GCTACCAG-TTGCGAA-- 340
consensus_6112#2 AGCAGCTGCAGAAGGACAATGACCAAACTTCCACTGGGCNCGGCTACCAG-TTGCGACAT 413
consensus_6112#0 AGCAGCTGCAGAAGGA-AATGACCAACTCACTGC--------GCTACCAGGTTGCGAA-- 363
**************** ********* * * ******** ******
consensus_6112#1 ACATGAC-GCAAAC-GTTCCG--GGGGCTGAAG-AAGAAAATT--GAATCCAACT--CCA 391
consensus_6112#2 ACATGAC-GCAAACCGTTCCGGTGAGGCTGAAGGAAGAAAATT--GAATCCAAACTACCA 470
consensus_6112#0 ACATGACAGCAAAC-GTTCCG--GGGGCTGAACGAACGAAAATAGGAATCCAACT-ACCA 419
******* ****** ****** * ******* ** *** * ******** ***
consensus_6112#1 TACCGGTG-CACCT-TGTGCCGC-CACCGGCCGGCTCGTC-TTCCCGCAATG--CAGGGC 445
consensus_6112#2 TACCGGTGGCACCT-TGTGCCGCGCACCGGC----------------------------- 500
consensus_6112#0 TACCGGTGACACCTATGTGCCGCCACCAGGNCGGCTCGTCCTTNCCGCAAATGCCAGGGC 479
******** ***** ******** * **
consensus_6112#1 ACGAAGCGCGTGAC--ACCCAACATCACCCGCACCCGCCGCATCTGCTGCCCCAACCAGA 503
consensus_6112#2 ------------------------------------------------------------
consensus_6112#0 ACGAANGCGGCGGTTGACACCCCAACAAATCCANCCCCGGCACCCGGCACGCAAGTATTG 539
consensus_6112#1 CCTTACCGTGCACGATCACGGACCG-----AGGCGTGCCGCGGGCATGCTGAAGAGTGGC 558
consensus_6112#2 ------------------------------------------------------------
consensus_6112#0 ACTNGGNCCCCAAAACCAAGAACCCCTTATAACCACAGGGTGGACACANTNGC-ATTCCC 598
consensus_6112#1 AAACGCACGCTCGTGCGGACCTTGCGTGCACTCTATGGACAATTTGTACCTGACTTGGTT 618
consensus_6112#2 ------------------------------------------------------------
consensus_6112#0 AATGGGAACCCAGGANAGCNCGTTTGCCCNTGCGGTCNNAACTTGGCTTCGCACAAGGAC 658
consensus_6112#1 TGGACCGTATTTTACCTAACACATTGGAGAACGTTGCACGTTAACTACTGCAAACTGTAG 678
consensus_6112#2 ------------------------------------------------------------
consensus_6112#0 GCTGGCGNNCNTCCTATNGCCCGN-AAAGAACGACGAAGAAGAANCATTCCGGTCCGTAC 717
consensus_6112#1 CAGG--AATCGGANGGGGAGGGGGGACATCCTTGAATATTACCCAACGGGGGAAGGAATT 736
consensus_6112#2 ------------------------------------------------------------
consensus_6112#0 TAACCTAACTCACTTCGTTAAGCGTGCGACAACACCGCACGCCTCAGTTGCCCGGGAACC 777
consensus_6112#1 GATCAGAGGAAGCAAATTCATACTCAAGCATGCACAGCAC-----GAAGATACGCTGC-- 789
consensus_6112#2 ------------------------------------------------------------
consensus_6112#0 CTTTGAGGTTGNTACACACNTATGGGAACAAATATGACACCCCTGGGANACTGGCTTCAT 837
consensus_6112#1 -----
consensus_6112#2 -----
consensus_6112#0 GGAAC 842
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||