These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1254 fasta sequence [CCGAGTAGTAGTGAGGATAATTAAATATTATTCTAATTGTAATGATTACGATTATTATTGATAGAGTTTCCTGGGCATACACATACGGCGGAACAAAGGAAGGTTAGGGTGGAAACATAACGGTGAATGCAGAAGCGAAGCGCGCATAATATTTTCGATGTTCTGGCAGGTATGAAAAGAAAGGGATTGTAAGAAAAAGCCAAGGGTGTAAGGCAAAAAAACACATTTCAGAACATAAAATGGTTACGTCTGTGGACGACATCATCACAAATGGACGCAAGCAAAAAAAAAAAAAAAAATACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAG-TTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTGTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATACAGGAGTGTAGCTTCAACGACTGGCGGGCACTATATACAAAAGAACAATAATTGCTGAAACGCCATGTGCACATGTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTG---CGTGAGTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCAGTGTGTGCGTGTGTGTG--AGTGTGTACGCGTGTGCAGGGTGCAGAAGGAAGAGGCAGCACTGCGTGTGCTTCGAATGATAGGATATGATGCAAATGGAAATACATCGTTAATTCTAGATACTAGTGAAAATAAATCAGTTAGGGTGCGGCGAGGTGTTTGCGGAAAATGGTGAATGAGAAAATGAATTGCAACAAAAACCTAGGTGTAAAAAAACGAATCGTAATACATTGGCTTTGGTGGTGATACCGTGTGCA] [+] EMBL BM615210 [CCGAGTAGTAGTGAGGATAATTAAATATTATTCTAATTGTAATGATTACGATTATTATTGATAGAGTTTCCTGGGCATACACATACGGCGGAACAAAGGAAGGTTAGGGTGGAAACATAACGGTGAATGCAGAAGCGAAGCGCGCATAATATTTTCGATGTTCTGGCAGGTATGAAAAGAAAGGGATTGTAAGAAAAAGCCAAGGGTGTAAGGCAAAAAAACACATTTCAGAACATAAAATGGTTACGTCTGTGGACGACATCATCACAAATGGACGCAAGCAAAAAAAAAAAAAAAAATACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGGAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAG TTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGA ] [+] EMBL BM611639 [ ATACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAGTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTGTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGT ] [+] EMBL BX612542 [ ACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAG TTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGATTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTGTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTGGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATACAGGAGTGTAGCTTCAACGACTGGCGGGCACTATATACAAAAGAACAATAATTGCTGAAACGCCATGTGCACATGTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTG CGTGAGTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCAGTGTGTGCGTGTGTGTG AGTGTGTACGCGTGTGCAGGGT ] [+] EMBL BX623172 [ CCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTTTGTTACACTTTTGCCTCCTGTTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTCGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTAGCTTCAGCGACTGGCGGGCACTATATACAAAAGAACAATAATTGCTGAAACGCCATGTGCACATGTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTGAGTAGTGAGTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCGGTGTGTGCGTGTGTGTGTCAGTGTGTACGCGTGTGTAGGGTGCAGAAGGAAGAGGCAGCACTGCGTGTGCTTCGAATGATAGGATATGATGCAAATGGAAATACATCGTTAATTCTAGATACTAGTGAAAATAAATCAGTTAGGGTGCGGCGAGGTGTTTGCGGAAAATGGTGAATGAGAAAATGAATTGCAACAAAAACCTAGGTGTAAAAAAACGAATCGTAATACATTGGCTTTGGTGGTGATACCGTGTGCA] consensusID : consensus_6115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [AATCGCCCGAGGNTAGTGTGCTTGCGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAGGTTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTTTGTTACACTTTTGCCTCCTGATTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTCTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAANGAGCATCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTATAGCTTCAGCGACTGGCGGGCACTATATACAAAAGAACAACTAATTGCTGAAACGCCATGTGCACATGTGTNGATGAGTTTGCGGGTATGATGTCGCATGAATGGGCN] [+] EMBL AL934731 [AATCGCCCGAGGNTAGTGTGCTTGCGTGTGTAGTAGCATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGGTGTCGTATGCCGTTTGCAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGAACTTGTGTAAATGCATTTGAACAGGTTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAATTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTTAATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGGAAAATTTTGTTACACTTTTGCCTCCTGATTTGCTCGTTGTTGTTCATCCTAACAGCAAAAGCAGGTAGCTTGATTTGTCTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGAAGAANGAGCATCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTATAGCTTCAGCGACTGGCGGGCACTATATACAAAAGAACAACTAATTGCTGAAACGCCATGTGCACATGTGTNGATGAGTTTGCGGGTATGATGTCGCATGAATGGGCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6115#0 CCGAGTAGTAGTGAGGATAATTAAATATTATTCTAATTGTAATGATTACGATTATTATTG 60 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 ATAGAGTTTCCTGGGCATACACATACGGCGGAACAAAGGAAGGTTAGGGTGGAAACATAA 120 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 CGGTGAATGCAGAAGCGAAGCGCGCATAATATTTTCGATGTTCTGGCAGGTATGAAAAGA 180 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 AAGGGATTGTAAGAAAAAGCCAAGGGTGTAAGGCAAAAAAACACATTTCAGAACATAAAA 240 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 TGGTTACGTCTGTGGACGACATCATCACAAATGGACGCAAGCAAAAAAAAAAAAAAAAAT 300 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 ACAATCAGCTGGCTGGAAACTGGCCGGAAATAGCGAGTGTGCTTGCGTGTGTGTAGTAGC 360 consensus_6115#1 -----------------AATCGCCCGAGGNTAG----TGTGCTTGCGTGTGT--AGTAGC 37 ** * *** *** *************** ****** consensus_6115#0 ATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGGAGGGTGTCGTATGCCGTTTG 420 consensus_6115#1 ATGGCTAAAATAGTACAGCAGACAAACCTCGAAGAGGAGG---GTGTCGTATGCCGTTTG 94 **************************************** ***************** consensus_6115#0 CAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGA 480 consensus_6115#1 CAGACCGCAAGATAGATAGGACAGAAATGTGTCTTTGCATTGCCCATATTGTTTAAGAGA 154 ************************************************************ consensus_6115#0 ACTTGTGTAAATGCATTTGAACAG---TTTTTTTTTGCAGTGTTCTTATTCTACACGCAA 537 consensus_6115#1 ACTTGTGTAAATGCATTTGAACAGGTTTTTTTTTTTGCAGTGTTCTTATTCTACACGCAA 214 ************************ ********************************* consensus_6115#0 TTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTT 597 consensus_6115#1 TTGAAACCATGCTTCACCTTTACCTATGTGCGCGGTCAAATCCTGTACGCTTTCCAGCTT 274 ************************************************************ consensus_6115#0 AATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGG 657 consensus_6115#1 AATTCACATTTTCATAGAACCACCATCGAGCGTGGAATCGAGATGATGCGTAACATCGGG 334 ************************************************************ consensus_6115#0 AAAATTGTGTTACACTTTTGCCTCCTG-TTTGCTCGTTGTTGTTCATCCTAACAGCAAAA 716 consensus_6115#1 AAAATTTTGTTACACTTTTGCCTCCTGATTTGCTCGTTGTTGTTCATCCTAACAGCAAAA 394 ****** ******************** ******************************** consensus_6115#0 GCAGGTAGCTTGATTTGTTTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGA 776 consensus_6115#1 GCAGGTAGCTTGATTTGTCTGGCGACTGTCCCCAGGCCTAGGTTCCCAGGAAACGTACGA 454 ****************** ***************************************** consensus_6115#0 AGAAAGAGCAATCCGATCGTTATATCCACCCCAACAATAGATACAGGAGTGTA--GCTTC 834 consensus_6115#1 AGAANGAGCA-TCCGATCGTTATATCCACCCCAACAATAGATTCAGGAGTGTATAGCTTC 513 **** ***** ******************************* ********** ***** consensus_6115#0 AACGACTGGCGGGCACTATATACAAAAGAACAA-TAATTGCTGAAACGCCATGTGCACAT 893 consensus_6115#1 AGCGACTGGCGGGCACTATATACAAAAGAACAACTAATTGCTGAAACGCCATGTGCACAT 573 * ******************************* ************************** consensus_6115#0 GTGTTTGATGAGTTTGCGGGTATGATGTCGTATGAATGGGCAAGAGTAGTGTGTGCGTGA 953 consensus_6115#1 GTGTN-GATGAGTTTGCGGGTATGATGTCGCATGAATGGGCN------------------ 614 **** ************************ ********** consensus_6115#0 GTGAGAGAAAATTGGGTGTGTGCGATGATGTAGTTTGTATGTGGGCAGTGTGTGCGTGTG 1013 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 TGTGAGTGTGTACGCGTGTGCAGGGTGCAGAAGGAAGAGGCAGCACTGCGTGTGCTTCGA 1073 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 ATGATAGGATATGATGCAAATGGAAATACATCGTTAATTCTAGATACTAGTGAAAATAAA 1133 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 TCAGTTAGGGTGCGGCGAGGTGTTTGCGGAAAATGGTGAATGAGAAAATGAATTGCAACA 1193 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 AAAACCTAGGTGTAAAAAAACGAATCGTAATACATTGGCTTTGGTGGTGATACCGTGTGC 1253 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 A 1254 consensus_6115#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||