cluster # 6117

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Anopheles gambiae
cluster # 6117 cluster # 6117 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6117#0 length = 524 sequences # 4

consensus_6117#1 length = 453 sequences # 1

consensusID : consensus_6117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 524
fasta sequence

                              [GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTACAAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGTAAAAAAAA]

[+] EMBL AGA285072            [GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTACAAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTAT                                                          ]
[+] EMBL AGA285283            [GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTACAAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAA                                                                                           ]
[-] EMBL AGA283781            [                                                                                           GGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGTAAAAAAAA]
[-] EMBL AGA283987            [                                                                                                                      CAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTTATTGTAAAAAAAA]




>consensus_6117#0
GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTAC
AAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCA
ATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTA
GAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATC
AAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATG
AACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACA
CATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCA
GCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATG
ATCCTAATAAAGAATCTATTTGAGATGTTTAAATGTAAAAAAAA

consensusID : consensus_6117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [CCGCGGACGCGTGGGCGGGATGCAAGTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGCCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGT]

[+] EMBL BM590164             [CCGCGGACGCGTGGGCGGGATGCAAGTGGGAGATTGCAGCATGTATGCATGTCGGCAATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAACTACTGCCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATCCTAATAAAGAATCTATTTGAGATGTTTAAATGT]




>consensus_6117#1
CCGCGGACGCGTGGGCGGGATGCAAGTGGGAGATTGCAGCATGTATGCATGTCGGCAATT
CGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTAGAA
GAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATCAAG
TTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATGAAC
TACTGCCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACACAT
AAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCAGCT
CGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATGATC
CTAATAAAGAATCTATTTGAGATGTTTAAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6117#0      GGACTAGTGGGAAGGGTACAATCATGGTAATAGGACCACAGCAAAATGATACCGTAGTAC 60
consensus_6117#1      ------------------------------------------------------------
                                                                                  

consensus_6117#0      AAGTGATGATAACTCCAACGGGATGCAACTGGGAGATTGCAGCATGTATGCATGTCGGCA 120
consensus_6117#1      ---CCGCGGACGCGTGGGCGGGATGCAAGTGGGAGATTGCAGCATGTATGCATGTCGGCA 57
                             *    *     ********** *******************************

consensus_6117#0      ATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTA 180
consensus_6117#1      ATTCGTTTGCAGAAGTATTACAGTGTTTGGTTCACCGGCCGGTACAGCAATTATGCATTA 117
                      ************************************************************

consensus_6117#0      GAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATC 240
consensus_6117#1      GAAGAGGGAATGAGAGAGTTTAATTTGTACAGTGGTATATATTGCGAGGGAGGGCAAATC 177
                      ************************************************************

consensus_6117#0      AAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATG 300
consensus_6117#1      AAGTTGACAAGTCACGTTTGGAGCGGGTTGATTGAGACAAGATTGCAAAAATATATTATG 237
                      ************************************************************

consensus_6117#0      AACTACTGTCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACA 360
consensus_6117#1      AACTACTGCCTACAATAGCAGTAGCAGCTAGCTGAACACGTATGTTTGCGATCGTGCACA 297
                      ******** ***************************************************

consensus_6117#0      CATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCA 420
consensus_6117#1      CATAAAACAAACTCCGTATATACAAGCTGTGTAATGTGTGCGGCGTGGCAAATTTTACCA 357
                      ************************************************************

consensus_6117#0      GCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATG 480
consensus_6117#1      GCTCGCTCATAAAAACGTTTATATCTCTTATTTACAAAGCATCTATAATCGAGAGAAATG 417
                      ************************************************************

consensus_6117#0      ATCCTAATAAAGAATCTATTTGAGATGTTTAAATGTAAAAAAAA 524
consensus_6117#1      ATCCTAATAAAGAATCTATTTGAGATGTTTAAATGT-------- 453
                      ************************************