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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1026 fasta sequence
[GAAGACTACGACAGATCTACTATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCACAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACTAACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACTTCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACTACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGC-GTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGATGGA-TTGGGCGCATGACAGGGGGCGGC-GGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGGCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGANGAGGGC-ACTGGTTGCTGCATCTCTGCTAATGCAAGTGATAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCCAGAAGTTCTGCCAATCTAATATAAACGCGAGAGCTTTAGGAGATAGGCGCCCTATTAATGCGAAAGGCGAGATTCAATAAGGTAGTTTTTTTTAAACAAAAAAATTAAANAAAAGGCAGCA]
[+] EMBL BX626166 [GAAGACTACGACAGATCTACTATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCACAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACTAACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACTTCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACTACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGC GTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGATGGA TTGGGCGCATGACAGGGGGCGGC GGGCTTCANGGCACGGTACAACAGTATCAGCGGCAGCGGAAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGGCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGANGAGGGC ACTGGTTGCTGCATCTCTG ]
[+] EMBL BX623183 [ TATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCACAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACTAACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACTTCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACTACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGC GTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTTGGGCGCATGACAGGGGGCGGCGGGGCTTCAGGGCACCGTACAACAGTATCAGCGGCAGCGG ]
[-] EMBL BX466835 [ GACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAACCGCGTAACGCAATCGAATCAGCGGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGA TTGGGCGCATGACAGGGGGCGGC GGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGG AACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGTGATAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCCAGAAGTTCTGCCAATCTAATATAAACGCGAGAGCTTTAGGAGATAGGCGCCCTATTAATGCGAAAGGCGAGATTCAATAAGGTAGTTTTTTTTAAACAAAAAAATTAAANAAAAGGCAGCA]
consensusID : consensus_6119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTGGCTGGGTAACTTTGTCCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAGGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGCGATAAGCGTTGCCCAAACATTCCTTCGAACGAGTGTCCCCAGAAGTTCTGCCAACCTAATATAAACGCGAGAGCGTTAGGAGATAGGCGCCCTATGAATGCGAAAGGCGAGATTCAATAAGGTGTTTTTTTTAAACAAAAAATAATGTAGCAATCATGCAAAAGCAGCGCCAGCAAAAACAGTAGCTAATTATTGTGCGCGTGCGCGCTGAACTATTGTACAATCTAACCAACCCTAATATCAAAACTTCACTGAAGTCACAAATAGGATGACGCTACGTCTCG]
[+] EMBL BM623283 [CCGCGGACGCGTGGGCGGACGCGTGGGTGGCTGGGTAACTTTGTCCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAGGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGCGATAAGCGTTGCCCAAACATTCCTTCGAACGAGTGTCCCCAGAAGTTCTGCCAACCTAATATAAACGCGAGAGCGTTAGGAGATAGGCGCCCTATGAATGCGAAAGGCGAGATTCAATAAGGTGTTTTTTTTAAACAAAAAATAATGTAGCAATCATGCAAAAGCAGCGCCAGCAAAAACAGTAGCTAATTATTGTGCGCGTGCGCGCTGAACTATTGTACAATCTAACCAACCCTAATATCAAAACTTCACTGAAGTCACAAATAGGATGACGCTACGTCTCG]
consensusID : consensus_6119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[AATCGCCCGAGGTNAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAAGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGTGNTAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCC]
[+] EMBL AL930206 [AATCGCCCGAGGTNAAATAGTACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATGTGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTTCGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCAGCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAGCCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAAGACCCGCACCACCCGCACGTCCACCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGATGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGGCAGCGGAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCGGCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTGTTTGCTGCATCTCTGCTAATGCAAGTGNTAAGCGTTGCCCAAACATTCCTTCGAAAGAGTGTCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6119#0 GAAGACTACGACAGATCTACTATCTTAATGGAGAGCGGAGCATGCTACATGGAATTTCCA 60
consensus_6119#2 ------------------------------------------------------------
consensus_6119#1 ------------------------------------------------------------
consensus_6119#0 CAATATACTACGTTTTCCTTTTGCCAACTAACCCGCAACTAACTGGAACGAAAGTCTACT 120
consensus_6119#2 ------------------------------------------------------------
consensus_6119#1 ------------------------------------------------------------
consensus_6119#0 AACCTAGAATGATAACCGTCAACGGAAATCCACCTTTAACTCGTAGCGCACAATGCAACT 180
consensus_6119#2 ------------------------------------------------------------
consensus_6119#1 ------------------------------------------------------------
consensus_6119#0 TCGTTTGATATGGCACATATGGCACTTTAAAAAGAAACTCCAATTCAAAGTCGTGCTACT 240
consensus_6119#2 ------------------------------------------------------------
consensus_6119#1 ------------------------------------------------------------
consensus_6119#0 ACTGGAAGGATAATACTGGAAATAGTGCGCTATTGAGGAGATGTTATTGCCCAAAATAGT 300
consensus_6119#2 ---------------------------------------AATCGCCCGAGGTNAAATAGT 21
consensus_6119#1 ------------------------------------------------------------
consensus_6119#0 ACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATG 360
consensus_6119#2 ACGAGTGGGTCGTTCTTTTCCCAAAATATGCCGAAATAGAGCCCCTTTTAAGCATGTATG 81
consensus_6119#1 ------------------------------------------------------------
consensus_6119#0 TGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTT 420
consensus_6119#2 TGTATGGCGTCTGATAATGGAACAGTCGGAACTCGCTTTGCCCCACAAACGACCTCTTTT 141
consensus_6119#1 ------------------------------------------------------------
consensus_6119#0 CGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCA 480
consensus_6119#2 CGTTCTCGACTATATAGTCTTCGTCGTCTCCTTGGCGAATCGCGTAACGCAATCGAATCA 201
consensus_6119#1 ---------CCGCGGACGCGTGGGCGGACGCGTGGGTGGCTGGGTAACTTTGTC------ 45
* * * * * ** * *** * ***** **
consensus_6119#0 GCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAG 540
consensus_6119#2 GCGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAG 261
consensus_6119#1 -CGTCTCGAGGAAACGTTTGCCCAGCAGCTGGAAGAGATGGAACAGTTGTACGGCAACAG 104
***********************************************************
consensus_6119#0 CCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAGGACCCGCATCACCCGCACGTCCA 600
consensus_6119#2 CCTGGTACCGATGCCACCGCAATCCCCGCAATCGCAAGACCCGCACCACCCGCACGTCCA 321
consensus_6119#1 CCTGGTACCGATGCCACCGCAATCCCCGCAATCGCACGACCCGCACCACCCGCACGTCCA 164
************************************ ******** **************
consensus_6119#0 CCATCACCATCTGCTGCAGGTCGGAGGATCGACGCGGAGCAGCATTTCTTCATATTCCGA 660
consensus_6119#2 CCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGA 381
consensus_6119#1 CCATCACCATCTGCTGCAGGTCGGAGGGTCGACGCGGAGCAGCATTTCTTCATATTCCGA 224
*************************** ********************************
consensus_6119#0 TGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGG 720
consensus_6119#2 TGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGG 441
consensus_6119#1 TGGATTGGGCGCATGACAGGGGGCGGCGGGCTTCAGGGCACGGTACAACAGTATCAGCGG 284
************************************************************
consensus_6119#0 CAGCGGAAACCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCG 780
consensus_6119#2 CAGCGGAA-CCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCG 500
consensus_6119#1 CAGCGGAA-CCGGAATGAGCGGCGGTGGTGCCGGTGCGAGCAGCAGCAACAGCAGCATCG 343
******** ***************************************************
consensus_6119#0 GGCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGANGAGGGCA-CTG 839
consensus_6119#2 GCCACAGCAGTTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAAGGCAACTG 560
consensus_6119#1 GCCACAGCAGCTACCGGAACAGCAGCAGCTAGTAGTGTGGTCGATCGAGGAGGGCAACTG 403
* ******** ************************************* ** **** ***
consensus_6119#0 GTTGCTGCATCTCTGCTAATGCAAGTGATAAGCGTTGCCCAAACATTCCTTCGAAAGAGT 899
consensus_6119#2 TTTGCTGCATCTCTGCTAATGCAAGTGNTAAGCGTTGCCCAAACATTCCTTCGAAAGAGT 620
consensus_6119#1 TTTGCTGCATCTCTGCTAATGCAAGCGATAAGCGTTGCCCAAACATTCCTTCGAACGAGT 463
************************ * *************************** ****
consensus_6119#0 GTCCCCAGAAGTTCTGCCAATCTAATATAAACGCGAGAGCTTTAGGAGATAGGCGCCCTA 959
consensus_6119#2 GTCCCC------------------------------------------------------ 626
consensus_6119#1 GTCCCCAGAAGTTCTGCCAACCTAATATAAACGCGAGAGCGTTAGGAGATAGGCGCCCTA 523
******
consensus_6119#0 TTAATGCGAAAGGCGAGATTCAATAAGGTAGTTTTTTTTAAACAAAAAAATTAAANAAAA 1019
consensus_6119#2 ------------------------------------------------------------
consensus_6119#1 TGAATGCGAAAGGCGAGATTCAATAAGGTGTTTTTTTTAAACAAAAAATAATGTAGCAAT 583
consensus_6119#0 GGCAGCA----------------------------------------------------- 1026
consensus_6119#2 ------------------------------------------------------------
consensus_6119#1 CATGCAAAAGCAGCGCCAGCAAAAACAGTAGCTAATTATTGTGCGCGTGCGCGCTGAACT 643
consensus_6119#0 ------------------------------------------------------------
consensus_6119#2 ------------------------------------------------------------
consensus_6119#1 ATTGTACAATCTAACCAACCCTAATATCAAAACTTCACTGAAGTCACAAATAGGATGACG 703
consensus_6119#0 ----------
consensus_6119#2 ----------
consensus_6119#1 CTACGTCTCG 713
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||