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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 909 fasta sequence
[CCGAAATAACAACGGGGGCATGCAAAATAAAAGGGCGGTAACAACTACTGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAG--AGAGGACGCATTCAAGACGCATGGTTAGCAAATCGAAACCGTGCGACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAAT-AAGAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGAGAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCAT-AAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAAGGGAAGATTACATCGCTGCAGCGAGATGGTAGGGAGAGAAAGGGAAGAGATGTCATCATCCCATCATCCTCCCTCCTGTAAGAGCCAATAGTGAGANNGCGCAGAGACAGAAGANCAGCAGCAGAGGANGAGGNAGAAAAAAGGGNAAAAAAAAAAAGACACCNNTTGNNGCCCCCTCGGNNCAAANACANNTTTTAACCNCAGCCNACATTNATTGTNNGGNGGCGCAATTNNACGCCNNGNGGGGCCNATGNCCCNNATTAGTAANCNATATACAATCAGCGGGCNGCC]
[+] EMBL BM643882 [CCGAAATAACAACGGGGGCATGCAAAATAAAAGGGCGGTAACAACTACTGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAG AGAGGACGCATTCAAGACGCATGGTTAGCAAATCGAAACCGTGCGACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAAT AAGAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGAGAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCAT AAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAAGGGAAGATTACATCGCTGCAGCGAGATGGTAGGGAGAGAAAGGGAAGAGATGTCAT ]
[+] EMBL CF541931 [ GAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACA GTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTACACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGGAGAAATAAAAAAAACAACCCGCACATAGAGCAAGAAAAAGAGCC AGAGAGAGAGAGAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGAGTATGTAAATGCACGGAGCATAAAAAAGGGTGCAAAACGCTCTCAAAACCAGCAAACACAAAAGCAAATCATGTTAATGGAAAGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAA GGAAGATTACATCGCTGCAGCGAGATGGTAGGGAGAGANAGGGAAGAGATGCCATCATCCCATCATCCTCCCTCCTGTAAGAGCCAATAGTGAGANNGCGCAGAGACAGAAGANCAGCAGCAGAGGANGAGGNAGAAAAAAGGGNAAAAAAAAAAAGACACCNNTTGNNGCCCCCTCGGNNCAAANACANNTTTTAACCNCAGCCNACATTNATTGTNNGGNGGCGCAATTNNACGCCNNGNGGGGCCNATGNCCCNNATTAGTAANCNATATACAATCAGCGGGCNGCC]
consensusID : consensus_6122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[GATCCCCCGAGGTCTAAGCCAATACAACGGGGCATTACACTACAGCATAAAAGCTGCTGCATCACTAGAAACTACTATAGCATGCAAGTGTAGAATCAATGCNTCCCNANAATAAAAAAGAACTGTTGTGAGGAGAAATGACAAATTGACCAAGAAGAATGTAACCTGATACCACCAGTGGAGAGAAGCTAAGAAAGANAGATAGAGGACGCATTCACGACGCATGGTTAGNAAATCGAAACCGTGCAACNGTGTGTGTGTGTGTNCCAGTGCCAGTGTTGCTGCTCTGGTTGGTAAAGCGTCTTGGTTTCCACTCAATTNTTCCCAAGGCCAGCCACTGAGTNAGGTAGAGACTCTGTAAATCGGAAATTTGNATAAAGTAATAAACCGAAACACCTGCTACCAATATGTATGCACCGAACATGAAATGCCAGGAGAAGTACGCATGACGAAGACGAAGACGAAGAGACAATGCACATAGAGGCGAAGAGGACGAAACCATCTAGCCNAAAAACTGCCANGCGTTATATTGCCCGCTGCGAANGAATACCAGTTGCGAGGCCCCCAGTAGAGCGGTCTGGTAGGAGTATTGTTAAATTGCGACTGACATGCTATAAAACCAGGNTTGTCGCNANCGCANCTGCGTCTTCCAAACATCCAAGTCAA]
[+] EMBL AL931622 [GATCCCCCGAGGTCTAAGCCAATACAACGGGGCATTACACTACAGCATAAAAGCTGCTGCATCACTAGAAACTACTATAGCATGCAAGTGTAGAATCAATGCNTCCCNANAATAAAAAAGAACTGTTGTGAGGAGAAATGACAAATTGACCAAGAAGAATGTAACCTGATACCACCAGTGGAGAGAAGCTAAGAAAGANAGATAGAGGACGCATTCACGACGCATGGTTAGNAAATCGAAACCGTGCAACNGTGTGTGTGTGTGTNCCAGTGCCAGTGTTGCTGCTCTGGTTGGTAAAGCGTCTTGGTTTCCACTCAATTNTTCCCAAGGCCAGCCACTGAGTNAGGTAGAGACTCTGTAAATCGGAAATTTGNATAAAGTAATAAACCGAAACACCTGCTACCAATATGTATGCACCGAACATGAAATGCCAGGAGAAGTACGCATGACGAAGACGAAGACGAAGAGACAATGCACATAGAGGCGAAGAGGACGAAACCATCTAGCCNAAAAACTGCCANGCGTTATATTGCCCGCTGCGAANGAATACCAGTTGCGAGGCCCCCAGTAGAGCGGTCTGGTAGGAGTATTGTTAAATTGCGACTGACATGCTATAAAACCAGGNTTGTCGCNANCGCANCTGCGTCTTCCAAACATCCAAGTCAA]
consensusID : consensus_6122#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence
[GGGGCATAACAACTACAGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAATAAAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGATAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAANGGAAGATTACATCGCTGCAGCTGCAGATGGTAGGGAGAGAAAAG]
[+] EMBL BX626853 [GGGGCATAACAACTACAGCATAAAAGCTGCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAAAATGCAGCAAAAAAATAAAAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCACCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAATAAAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGATAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAANGGAAGATTACATCGCTGCAGCTG ]
[+] EMBL BX616205 [ GAGGACGCATTCACGACGCATGGTTAGCAAATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCATGCCATGTGTGCTCTGGTTGGCAAGCTTTGGTTTCCACTCATTTTCCCAAGCAAGCCATGATGAGTAAACAGCAAAGGAAATTGAAGAAATAAAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTATATGCAGTGCAGATAACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAAAAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATGGGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAAGGGAAGATTACATCGCTGCAGCTGCAGATGGTAGGGAGAGAAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6122#0 CCGAAATAACAACGGGGGCATGCAAAATAAAAGGGCGGTAACAACTACTGCATAAAAGCT 60
consensus_6122#2 --------------------------------GGGGCATAACAACTACAGCATAAAAGCT 28
consensus_6122#1 ----GATCCCCCGAGGTCTAAGCCAATACAACGGGGCATTACA-CTACAGCATAAAAGCT 55
*** * *** **** ***********
consensus_6122#0 GCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAA--AATGCAGCAAAAAAATAA 118
consensus_6122#2 GCTGAAAAATAAGAAACTACTATAGCATGCAAGTGAGAAA--AATGCAGCAAAAAAATAA 86
consensus_6122#1 GCTGCATCACTAGAAACTACTATAGCATGCAAGTGTAGAATCAATGCNTCCCNANAATAA 115
**** * * ************************ ** ***** * * *****
consensus_6122#0 AAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCA 178
consensus_6122#2 AAAAGAACTGCTTGTGAGGAGAAATGACAAAGTGACAAAGAAGAATGTAAACCGATACCA 146
consensus_6122#1 AAAAGAACTG-TTGTGAGGAGAAATGACAAATTGACCAAGAAGAATGTAACCTGATACCA 174
********** ******************** **** ************* * *******
consensus_6122#0 CCAGTGGAGAGAAGCTAAGAGAGAGAGA--GAGGACGCATTCAAGACGCATGGTTAGCAA 236
consensus_6122#2 CCAGTGGAGAGAAGCTAAGAGAGAGAGATAGAGGACGCATTCACGACGCATGGTTAGCAA 206
consensus_6122#1 CCAGTGGAGAGAAGCTAAGAAAGANAGATAGAGGACGCATTCACGACGCATGGTTAGNAA 234
******************** *** *** ************* ************* **
consensus_6122#0 ATCGAAACCGTGCGACAGTGTGTGTGTGTATGCCA-TGCCA-TGTG--TGCTCTGGTTGG 292
consensus_6122#2 ATCGAAACCGTGCAACAGTGTGTGTGTGTATGCCA-TGCCA-TGTG--TGCTCTGGTTGG 262
consensus_6122#1 ATCGAAACCGTGCAACNGTGTGTGTGTGTGTNCCAGTGCCAGTGTTGCTGCTCTGGTTGG 294
************* ** ************ * *** ***** *** ************
consensus_6122#0 CAA---GCTTTGGTTTCCACTCA--TTTTCCCAAG-CAAGCCATGATGAGTAAACAGCAA 346
consensus_6122#2 CAA---GCTTTGGTTTCCACTCA--TTTTCCCAAG-CAAGCCATGATGAGTAAACAGCAA 316
consensus_6122#1 TAAAGCGTCTTGGTTTCCACTCAATTNTTCCCAAGGCCAGCCAC--TGAGTNA-----GG 347
** * ************** * ******** * ***** ***** *
consensus_6122#0 AGGAAATTGAAGAAATAAGAAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGA 406
consensus_6122#2 AGGAAATTGAAGAAATAA-AAAACAACCCGCACATAGAGCAAGAAAGAGAGCCAGAGAGA 375
consensus_6122#1 TAGAGACTCTGTAAATCGGAAATT------TGNATAAAGTAATAAACCGAAACACCTGCT 401
** * * **** *** *** ** ** *** ** **
consensus_6122#0 GAGAGA------------GAGACAAAACAAGAGACAAACATCGCAAAACGCAGGTTAT-A 453
consensus_6122#2 GAGAGATAGAGAGAGAGAGAGACAAAGCAAGAGACAAACATCGCAAAACGCAGGTTAT-A 434
consensus_6122#1 ACCAATATGTATGCACCGAACATGAAATGCCAGGAGAAGTACGCATGACGAAGACGAAGA 461
* * * ** ** ** **** *** ** * *
consensus_6122#0 TGCAGTGCAGATA-ACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAA 512
consensus_6122#2 TGCAGTGCAGATA-ACATGCAGCCCCGAACGTCGTGGGTATGTAAGTGCACGAAGCATAA 493
consensus_6122#1 CGAAGAGACAATGCACATAGAGGCGAAGAGGACGAAACCATCTA---GCCNAAAAACTGC 518
* ** * ** **** ** * * * ** ** ** ** ** *
consensus_6122#0 AAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATG 572
consensus_6122#2 AAAGTGTGCAAAACGCTCTCAAAACCAGCAAAAACAAAATCAAATCATGTTAATGGAATG 553
consensus_6122#1 CANGCGT-TATATTGCCCGCTG--CGAANGAATACCAGTTGCGAGGCCCCCAGTAGAGCG 575
* * ** * * ** * * * * ** ** * * * * * ** *
consensus_6122#0 GGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGAGGTGGTTGAGAAGGGAAGATTACATC 632
consensus_6122#2 GGTTGTTGTGCGTGTCCTGTGTTGTTGAACGCGTGGTGGTTGAGAANGGAAGATTACATC 613
consensus_6122#1 GTCTG--GTAGGAGTATTGTTAAATTGCGACTGACATGCTATAAAACCAGGNTTGTCGCN 633
* ** ** * ** *** *** * ** * * ** * *
consensus_6122#0 GCTGCAGCG--AGATGGTAGGGAGAGAAAGGGAAGAGATGTCATCATCCCATCATCCTCC 690
consensus_6122#2 GCTGCAGCTGCAGATGGTAGGGAGAGAAAAG----------------------------- 644
consensus_6122#1 ANCGCANCTGCGTCTTCCAAACATCCAAGTCAA--------------------------- 666
*** * * * * **
consensus_6122#0 CTCCTGTAAGAGCCAATAGTGAGANNGCGCAGAGACAGAAGANCAGCAGCAGAGGANGAG 750
consensus_6122#2 ------------------------------------------------------------
consensus_6122#1 ------------------------------------------------------------
consensus_6122#0 GNAGAAAAAAGGGNAAAAAAAAAAAGACACCNNTTGNNGCCCCCTCGGNNCAAANACANN 810
consensus_6122#2 ------------------------------------------------------------
consensus_6122#1 ------------------------------------------------------------
consensus_6122#0 TTTTAACCNCAGCCNACATTNATTGTNNGGNGGCGCAATTNNACGCCNNGNGGGGCCNAT 870
consensus_6122#2 ------------------------------------------------------------
consensus_6122#1 ------------------------------------------------------------
consensus_6122#0 GNCCCNNATTAGTAANCNATATACAATCAGCGGGCNGCC 909
consensus_6122#2 ---------------------------------------
consensus_6122#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||