These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1161 fasta sequence [CCGGAAAAGCGTGTCGCCGTGTCCGCCAGCGTGTGACAGTGCGTGTGTGTGTGCGTTAACAAGGTGTGTTGTTAAGGACGGCGGCTTAGCATTTAGCTAAAGTGCGCCTTCCCCCCGGTATCCCCCGACCAGCACCAACAAGGACGACACGTGCGTGCGTGCGTGTGTGTGTGTGGGTTCTTTCGACGTCAGCTCACGCGGTTCCATCCCGTTGCAATCGCTAATTCAATGTGTATGGCTTTAGTGCTGGTGCGGCTAGTTCCAACCTCTATGGAGTTTCAGCTAGACAGCGCAGAATACTGCCAGGCACAACACAAATAAGCGAAAGGCGCGCTTTTTCCCTGCCACCACCACCATCATCATCACCATCACCACCGCCGCCGCCGCCGCCGACGCCGCCCATCGCCGCCCCATACCTCCCGGGAAAGAAGGATAATCGAGCTGGAGAAAGTTGTAGCTGGACGAGATAGCGAGTGTGTGCTGGACGAAAGAGTGTGATAGAGAGAGCGAGAGGGCGTGTGAGGAGGTAGAAAGCGAGCAAGGCGAGGAGATCCTCCCGTGAAAGCGCGAATGGTGGTTGCTGCGTAAGGAAGGAGGTCTCGCGCAAGATCTGAAACACACACACCCGCAAGCCACCCGGGTAGCGAAGCTTTTGAATGAGAAGCCCCGAGCTGGAGCGTACATTGGAGAAGAAAGTGCTGCACGTCGTAGCGAAGCATCGTCGCCAGCAGAAGGAAGAATTGCACACGAGCGGTGTTTATTCATTGCCGTAGCCGCCATCACCGTAAGCACCCTCCAACCAAGTGTGAGTGTGTGTCTGTGTGTGTTGGTTACACCCCTCTCCCACACGGACACGCGTGTAGAGGTCCTTGCTAGAGGAGAAAAGCAAAAATAGACACAAAATCGGAAAGGAAGCCACGGGAGCAAAAGCATCGCCATCATCATCATCACCACGATCATTATCGTCATTACCTCCATCATCAACGCAAAGAACTCTGAAACGCTGTGATCGTAGCGATATATGATCCCCACACCAAGAACCCCACCCCACATAGGACCAGCTTTTAGTTAAATTATAATAGTCAATACCCGAACGCGCACGGTCGCTGTGCCGGGTTTTTTCCCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGC] [+] EMBL BM656691 [CCGGAAAAGCGTGTCGCCGTGTCCGCCAGCGTGTGACAGTGCGTGTGTGTGTGCGTTAACAAGGTGTGTTGTTAAGGACGGCGGCTTAGCATTTAGCTAAAGTGCGCCTTCCCCCCGGTATCCCCCGACCAGCACCAACAAGGACGACACGTGCGTGCGTGCGTGTGTGTGTGTGGGTTCTTTCGACGTCAGCTCACGCGGTTCCATCCCGTTGCAATCGCTAATTCAATGTGTATGGCTTTAGTGCTGGTGCGGCTAGTTCCAACCTCTATGGAGTTTCAGCTAGACAGCGCAGAATACTGCCAGGCACAACACAAATAAGCGAAAGGCGCGCTTTTTCCCTGCCACCACCACCATCATCATCACCATCACCACCGCCGCCGCCGCCGCCGACGCCGCCCATCGCCGCCCCATACCTCCCGGGAAAGAAGGATAATCGAGCTGGAGAAAGTTGTAGCTGGACGAGATAGCGAGTGTGTGCTGGACGAAAGAGTGTGATAGAGAGAGCGAGAGGGCGTGTGAGGAGGTAGAAAGCGAGCAAGGCGAGGAGATCCTCCCGTGAAAGCGCGAATGGTGGTTGCTGCGTAAGGAAGGAGGTCTCGCGCAAGATCTGAAACACACACACagaca ] [+] EMBL CNS09287 [ cctactgGGATAATCGAGCTGGAGAAAGTTGTAGCTGGACGAGAGAGCGAGTGTGTGCTGGACGAAAGAGTGTGATAGAGAGAGCGAGAGGGCGTGTGAGGAGGTAGAAAGCGAGCAAGGCGAGGAGATCCTCCCGTGAAAGCGCGAATGGTGGTTGCTGCGTAAGGAAGGAGGTCTCGCGCAAGATCTGAAACACACACACCCGCAAGCCACCCGGGTAGCGAAGCTTTTGAATGAGAAGCCCCGAGCTGGAGCGTACATTGGAGAAGAAAGTGCTGCACGTCGTAGCGAAGCATCGTCGCCAGCAGAAGGAAGAATTGCACACGAGCGGTGTTTATTCATTGCCGTAGCCGCCATCACCGTAAGCACCCTCCAACCAAGTGTGAGTGTGTGTCTGTGTGTGTTGGTTACACCCCTCTCCCACACGGACACGCGTGTAGAGGTCCTTGCTAGAGGAGAAAAGCAAAAATAGACACAAAATCGGAAAGGAAGCCACGGGAGCAAAAGCATCGCCATCATCATCATCACCACGATCATTATCGTCATTACCTCCATCATCAACGCAAAGAACTCTGAAACGCTGTGATCGTAGCGATATATGATCCCCACACCAAGAACCCCACCCCACATAGGACCAGCTTTTAGTTAAATTATAATAGTCAAT ] [-] EMBL CNS09288 [ GCGAGGAGATCCTCCCGTGAAAGCGCGAATGGTGGTTGCTGCGTAAGGAAGGAGGTCTCGCGCAAGATCTGAAACACACACACCCGCAAGCCACCCGGGTAGCGAAGCTTTTGAATGAGAAGCCCCGAGCTGGAGCGTACATTGGAGAAGAAAGTGCTGCACGTCGTAGCGAAGCATCGTCGCCAGCAGAAGGAAGAATTGCACACGAGCGGTGTTTATTCATTGCCGTAGCCGCCATCACCGTAAGCACCCTCCAACCAAGTGTGAGTGTGTGTCTGTGTGTGTTGGTTACACCCCTCTCCCACACGGACACGCGTGTAGAGGTCCTTGCTAGAGGAGAAAAGCAAAAATAGACACAAAATCGGAAAGGAAGCCACGGGAGCAAAAGCATCGCCATCATCATCATCACCACGATCATTATCGTCATTACCTCCATCATCAACGCAAAGAACTCTGAAACGCTGTGATCGTAGCGATATATGATCCCCACACCAAGAACCCCACCCCACATAGGACCAGCTTTTAGTTAAATTATAATAGTCAATACCCGAACGCGCACGGTCGCTGTGCCGGGTTTTTTCCCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGC] consensusID : consensus_6140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGCCCACGCGTCCGGTGCGTTAAACAAAGCAGGTAGAGCAAGAGAGAGATGGCACGTACCAAGCAGACCGCCCGTAAGTCGACCGGAGGAAAGGCTCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGTAAGAGCGCCCCGTCCACCGGTGGCGTGAAGAAGCCGCATCGCTACCGTCCCGGTACGGTCGCGCTGCGTGAAATCCGTCGGTACCAGAAGTCGACGGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGGCTGGTGCGTGAGATTGCGCAAGATTTCAAGACCGATCTGCTCTTTCAGTCGGCCGCCATCGGCGCCCTTCAGGAGGCCAGCGAAGCTTACTTGGTCGGTCTGTTCGAGGACACCAACTTGTGCGCGATCCACGCCAAGCGTGTCACCATCATGCCGAAGGACATTCAGCTGGCACGCCGCATCCGCGGCGAACGTGCTTAAGAAGCATATTGGATTAGTAATAAAATTTTCTTAAAACACTATATTATAATTTTAAACAAAATGATGCAACTACCATATGCGTACAATGCGCGATGGAGGAAAGGATGGAGGAGCAGGAGAAGAGGAGGAGAGCAAAGCAGAACTTTGATAAACATTGAACACAAA] [+] EMBL BM600830 [CCGCCCACGCGTCCGGTGCGTTAAACAAAGCAGGTAGAGCAAGAGAGAGATGGCACGTACCAAGCAGACCGCCCGTAAGTCGACCGGAGGAAAGGCTCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGTAAGAGCGCCCCGTCCACCGGTGGCGTGAAGAAGCCGCATCGCTACCGTCCCGGTACGGTCGCGCTGCGTGAAATCCGTCGGTACCAGAAGTCGACGGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGGCTGGTGCGTGAGATTGCGCAAGATTTCAAGACCGATCTGCTCTTTCAGTCGGCCGCCATCGGCGCCCTTCAGGAGGCCAGCGAAGCTTACTTGGTCGGTCTGTTCGAGGACACCAACTTGTGCGCGATCCACGCCAAGCGTGTCACCATCATGCCGAAGGACATTCAGCTGGCACGCCGCATCCGCGGCGAACGTGCTTAAGAAGCATATTGGATTAGTAATAAAATTTTCTTAAAACACTATATTATAATTTTAAACAAAATGATGCAACTACCATATGCGTACAATGCGCGATGGAGGAAAGGATGGAGGAGCAGGAGAAGAGGAGGAGAGCAAAGCAGAACTTTGATAAACATTGAACACAAA] consensusID : consensus_6140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [CCGCGGACGCGTGGGCTCCGACGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGCTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGCTCTACCCGGCCGCACCGATGCTGCCCCCGACGCCGGCCATGCCGTACGCTTACGGTCGCGCCATGCCGGCGATGATGCCAGTTGCGCCCCCACCGGCAGCCAACCTGCGCACCGTTGCCTCGAACACCGACGTGCTGGGACGGTTGGCTGTG] [+] EMBL BM603626 [CCGCGGACGCGTGGGCTCCGACGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGCTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGCTCTACCCGGCCGCACCGATGCTGCCCCCGACGCCGGCCATGCCGTACGCTTACGGTCGCGCCATGCCGGCGATGATGCCAGTTGCGCCCCCACCGGCAGCCAACCTGCGCACCGTTGCCTCGAACACCGACGTGCTGGGACGGTTGGCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6140#0 CCGGAAAAGCGTGTCGCCGTGTCCGCCAGCGTGTGACAGTGCGTGTGTGTGTGCGTTAAC 60 consensus_6140#1 ------------------------------------------------------------ consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 AAGGTGTGTTGTTAAGGACGGCGGCTTAGCATTTAGCTAAAGTGCGCCTTCCCCCCGGTA 120 consensus_6140#1 ------------------------------------------------------------ consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 TCCCCCGACCAGCACCAACAAGGACGACACGTGCGTGCGTGCGTGTGTGTGTGTGGGTTC 180 consensus_6140#1 ------------------------------------------------------------ consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 TTTCGACGTCAGCTCACGCGGTTCCATCCCGTTGCAATCGCTAATTCAATGTGTATGGCT 240 consensus_6140#1 ------------------------------------------------------------ consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 TTAGTGCTGGTGCGGCTAGTTCCAACCTCTATGGAGTTTCAGCTAGACAGCGCAGAATAC 300 consensus_6140#1 ---CCGCCCACGCGTCCGGTGCGTTAAACAAAGCAGGTAGAGCAAGAGAGAGATGGCACG 57 consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 TGCCAGGCACAACACAAATAAG-CGAAAGGCGCGCTTTTTCCCTGCCACCACCACCATCA 359 consensus_6140#1 TACCAAGCAGACCGCCCGTAAGTCGACCGGAGGAAAGGCTCCGCGCAAGCAGC-TGGCCA 116 consensus_6140#2 -----------------------CCGCGGACGCGTGGGCTCCGACGCGATACACGATCCA 37 * * * *** * ** consensus_6140#0 TCATCACCATCAC-CACCGCCGCCGCCGCCGCCGACGCCGCCCATC-GCCGCCCCATACC 417 consensus_6140#1 CCAAGGCCGCCCG-TAAGAGCGCCCCGTCCACCGGTGGCGTGAA---GAAGCCGCATCGC 172 consensus_6140#2 CCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATAC 97 ** ** * * * * * * * ** * ** * * consensus_6140#0 TCCCGGGAAAGAAGGATAATCGAGCTGGAGAAAGTTGTAGCTGGACGAGATAGCGAGTGT 477 consensus_6140#1 TACCGTCCCGGTACG---GTCGCGCTGCGTGAAATC-CGTCGGTACCAGAAGTCGACGGA 228 consensus_6140#2 AACCGCTCCAAGATG---AACAAGCT------ACTCACCGGTGGAC----TACTGTTCCT 144 *** * * * *** * * * ** * consensus_6140#0 G-TGCTGGACGAAAGAGTGTGATAGAGAGAGCGAGAGGGCGTGTGAGGAGGTAGAAAGCG 536 consensus_6140#1 GCTGCTGATCCGCAAGCTGCCGTTCCAGCGGCT----GGTGCGTGAGATTGCGCAAGATT 284 consensus_6140#2 GCTCGTGGCCGGCTCGCTCGTGTCC----GGCTC---GATGTTTG-GCCCGTTCGGACCG 196 * * ** * * * ** * * ** * * consensus_6140#0 AGCAAGGCGAGGAGATCCTCCCGTGAAAGCGCGAATGGTGGTTGCTGCGTAAGGAAGGAG 596 consensus_6140#1 TCAAGACCGATCTGCTCTTTCAGTCGGC-CGCCATCGGCGCCCTTC---------AGGAG 334 consensus_6140#2 TTCGGACCG-GCCGCTCAGCTGCCGGG--CGCAGTCGGCGGCTATC------CGGGCGCG 247 ** * ** *** ** * * * consensus_6140#0 GTCTCGCGCAAGATCTGAAACACACACACCCGCAAGCCACCCGGGTAGCGAAGCTTTTGA 656 consensus_6140#1 GCC-------AG---CGAAGCTTACTTGGTCG--GTCTGTTCGAGGACACCAACTTGTGC 382 consensus_6140#2 GTC-------------GGAGGGTATCCGGGCG-----CGGTCGGCGGTTTGCCCATGTAC 289 * * * * * ** ** * * * consensus_6140#0 ATGAGAAGCCCCGAGCTGGAGCGTACATTGGAGAAGAAAGTGCTGCA-CGTCGTAGCGAA 715 consensus_6140#1 GCGATCCACGCCAAGCGTGTCACCATCATGCCGAAGGACATTCAGC--TGGCACGCCGCA 440 consensus_6140#2 CCGGGCCGTCCCGGCCTTGGACA---GCTGCCCGTGTACCCGCCGCTCTACCCGGCCGCA 346 * ** * * ** * * * ** * ** * consensus_6140#0 GCATCGTCGCCAGCAGAAGGAAGAATTGCACACGAGCGGTGTTTATTCATTGCCGTAGCC 775 consensus_6140#1 TC--CGCGGCGAACGTGCTTAAGAAGCATATTGGATTAGTAATAAAATTTTCTTAAAAC- 497 consensus_6140#2 CCGATGCTGCCCCCGACGCCGGCCATGCCGTACGCTTACGGTCG------CGCCATGCCG 400 * * ** * * * * consensus_6140#0 GCCATCACCGTAAGCACCCTCCAACCAAGTGTGAGTGTGTGTCTGTGTGTGTTGGTTACA 835 consensus_6140#1 ACTAT-ATTATAA-----TTTTAAACAAA-ATGATGCAACTACCATATGCGTACAATGCG 550 consensus_6140#2 GCGATGATGCCAGTTGCGCCCCCACCGGCAGCCAACCTGCGCACCGTTGCCTCGAACACC 460 * ** * * * * * ** * * consensus_6140#0 CCCCTCTCCCACACGGACACGCGTGTAGAGGTCCTTGCTAGAGGAGAAAAGCAAAAATAG 895 consensus_6140#1 CG----------ATGGAGGAAAGGATGGAGG----AGCAGGAGAAGAGGAGGAGAGCAAA 596 consensus_6140#2 GAC---------GTGCTGGGACGGTTGGCTGTG--------------------------- 484 * * * * * consensus_6140#0 ACACAAAATCGGAAAGGAAGCCACGGGAGCAAAAGCATCGCCATCATCATCATCACCACG 955 consensus_6140#1 GCAGAACTTTGATAAACATTGAACACAAA------------------------------- 625 consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 ATCATTATCGTCATTACCTCCATCATCAACGCAAAGAACTCTGAAACGCTGTGATCGTAG 1015 consensus_6140#1 ------------------------------------------------------------ consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 CGATATATGATCCCCACACCAAGAACCCCACCCCACATAGGACCAGCTTTTAGTTAAATT 1075 consensus_6140#1 ------------------------------------------------------------ consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 ATAATAGTCAATACCCGAACGCGCACGGTCGCTGTGCCGGGTTTTTTCCCCATAAAAAAA 1135 consensus_6140#1 ------------------------------------------------------------ consensus_6140#2 ------------------------------------------------------------ consensus_6140#0 AAAAAAAAAAAAAAAAAAAAAAAGGC 1161 consensus_6140#1 -------------------------- consensus_6140#2 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||