These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1521 fasta sequence [CCGGAAATTGTGCACGTCTGGAACGATGGTGGGCTGCAGCTGCAGGGCCCGACCCATTCGGCCCAGCTCGTGCTGGACGGGGTAGCTTACATCACCGATGCCATGGCCAGCGTTGGCTCACAGCCGACGAAGCTCGTCAAATCGTGGGTAACGGACAAAATACGGCCCGCGTACTGGCGCCCGGACAGTGAGATTATTCACTGCAAAGGATGCATCAGCAACTTCGAGCGCTTGGGTCTGAAGAAGCATCACTGTCGCAGCTGTGGCGAAGGGTTCTGCAACCATTGCTCCAAGCACGAGATGGCCGTACCGAGCCGCGGCTGGAACTATCCGGTGCGCGTGTGCAACAGCTGCTGGAACGACGGTCGAAACGGTGGCACCGTGGGCACGGAAGGGCTGGCCGGTCCGGGGGCAGCCGTGAATGGAATGACATCGAACGGGAACCACCATCCTCACCACCGCCATCACTCGCCGGAACAAACGCACCGGAATGCAGAGCGGGAAGAAGTTGCTGACCAAGCGCTTACTGATGAGGCTGACCTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTGGTGCGGCGCTACGGCGAGGCAGTCATCAACACGATCAGCAACATTGGCGCCGTGCTGGAGTACCCGAAAGATTTTATCAAGGAATCGGCCCGCCCATCCTACTGGGTGCCGGATGCGGAGGCACCGAACTGCTACATCTGCGAGCTGCTGTTCGGTTCGCCGGAATAGCTGAACGCGCTGGCAGCACTTTCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGAACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGATCCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGCCCAACGTTCGGCAGCCGGCTCAGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAAACTCGTTTCCAATCCCCAACCCCACAAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTAGCTTGCTTTCCGTTGTGCGCGCTAGCGTGAA------TGTATGTGAAACCTTCCTGGATATATCCTTCCTTCCAAACAAAAGAAAACACCGCGGCACCAGGCTGCCGCCCCCAAAAGCTCAAGCTTCTTCTCAAGCCCTCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTT] [+] EMBL BM617109 [CCGGAAATTGTGCACGTCTGGAACGATGGTGGGCTGCAGCTGCAGGGCCCGACCCATTCGGCCCAGCTCGTGCTGGACGGGGTAGCTTACATCACCGATGCCATGGCCAGCGTTGGCTCACAGCCGACGAAGCTCGTCAAATCGTGGGTAACGGACAAAATACGGCCCGCGTACTGGCGCCCGGACAGTGAGATTATTCACTGCAAAGGATGCATCAGCAACTTCGAGCGCTTGGGTCTGAAGAAGCATCACTGTCGCAGCTGTGGCGAAGGGTTCTGCAACCATTGCTCCAAGCACGAGATGGCCGTACCGAGCCGCGGCTGGAACTATCCGGTGCGCGTGTGCAACAGCTGCTGGAACGACGGTCGAAACGGTGGCACCGTGGGCACGGAAGGGCTGGCCGGTCCGGGGGCAGCCGTGAATGGAATGACATCGAACGGGAACCACCATCCTCACCACCGCCATCACTCGCCGGAACAAACGCACCGGAATGCAGAGCGGGAAGAAGTTGCTGACCAAGCGCTTACTGATGAGGCTGACCTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTGGTGCGGCGCTACGGCGAGGCAGTCATCA ] [+] EMBL BX618227 [ TGACCAAGCGCTTACTGATGAGGCTGACCTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTGGTGCGGCGCTACGGCGAGGCAGTCATCAACACGATCAGCAACATTGGCGCCGTGCTGGAGTACCCGAAAGATTTTATCAAGGAATCGGCCCGCCCATCCTACTGGGTGCCGGATGCGGAGGCACCGAACTGCTACATCTGCGAGCTGCTGTTCGGTTCGCCGGAATAGCTGAACGCGCTGGCAGCACTTTCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGAACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGATCCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGCCCAACGTTCGGCAGCCGGCTCAGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTT ] [+] EMBL BM625001 [ ccgCGGAAGAGCTGAACGCGCTGGCAGCACTTGCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGAACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGACCCGGTGGCCCGTTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTAGTGTGCCGCCGGCCCAACGTTCGGCTGCCGGTTCGGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAAACTCGTTTCCAATCCCCAACCCCACAAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTAGCTTGCTTTCCGTTGTGCGCGCTAGCGTGAATGTGGCTGTATGTGAAACCTTCCTGGATATATCCTTCCTTCCAAACAAAAGAAAACACCGCGGCAC ] [+] EMBL BM629093 [ ccgGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGATCCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTCCTCGGGCGGTGGCGCATCCGTTCCCCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGCCCAACGTTCGGCAGCCGGCTCAGCGTCGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCTGTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGCGCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTGCCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAGACTCGTTTCCAATCCCCAACCCCACAAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTAGCTTGCTTTCCGTTGTGCGCGCTAGCGTGAA TGTATGTGAAACCTTCCTGGATATATCCTTCCTTCCAAACAAAAGAAAACACCGCGGCACCAGGCTGCCGCCCCCAAAAGCTCAAGCTTCTTCTCAAGCCCTCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTT] consensusID : consensus_6143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [AGGCAAGAATCNCNCACGAGGCGCTCGAGCAGGCTTTACAGTGAGCACAGAGTAGGAGCAGCCTCTTGACCAGCCAAGGTCACGAAGCGACACTCCGCTAGCGTACAGGCAGCGCAGGCACGGCAGGCAGGCAGGCAAAGCTTTGCATGTTTACGTTTACGCGGTTGCTGGCGATGGTGAGGAAGCCTTCTGGTTTCGCCGCGAACAGTGTGTGTTAGTGTGCGTGAGTGAATTTTCTTGCTAAAGTAACCCCCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTTTAGCCAAAAGAAAAAGAAAAACAAACGACAACAACGCTTCAAGCTTGAGGTGGTGGCGACAGCGTGGCATTCTAGGGCACGACTGCCGAACGACCAAAAATGTGATGATATTTACCTTTGTTTTCAAACACTTTTTTTACTAGCTCTTAGCTTATGAATATTGATAATGATTTTGATTGTTTGTTTAATTTGTGTTNAAGTGGTCCTGTGTACACCTTATTT] [+] EMBL BX467662 [AGGCAAGAATCNCNCACGAGGCGCTCGAGCAGGCTTTACAGTGAGCACAGAGTAGGAGCAGCCTCTTGACCAGCCAAGGTCACGAAGCGACACTCCGCTAGCGTACAGGCAGCGCAGGCACGGCAGGCAGGCAGGCAAAGCTTTGCATGTTTACGTTTACGCGGTTGCTGGCGATGGTGAGGAAGCCTTCTGGTTTCGCCGCGAACAGTGTGTGTTAGTGTGCGTGAGTGAATTTTCTTGCTAAAGTAACCCCCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGTGACAAAACAACAAATGTGTGTGTTTAGCCAAAAGAAAAAGAAAAACAAACGACAACAACGCTTCAAGCTTGAGGTGGTGGCGACAGCGTGGCATTCTAGGGCACGACTGCCGAACGACCAAAAATGTGATGATATTTACCTTTGTTTTCAAACACTTTTTTTACTAGCTCTTAGCTTATGAATATTGATAATGATTTTGATTGTTTGTTTAATTTGTGTTNAAGTGGTCCTGTGTACACCTTATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6143#0 CCGGAAATTGTGCACGTCTGGAACGATGGTGGGCTGCAGCTGCAGGGCCCGACCCATTCG 60 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 GCCCAGCTCGTGCTGGACGGGGTAGCTTACATCACCGATGCCATGGCCAGCGTTGGCTCA 120 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 CAGCCGACGAAGCTCGTCAAATCGTGGGTAACGGACAAAATACGGCCCGCGTACTGGCGC 180 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 CCGGACAGTGAGATTATTCACTGCAAAGGATGCATCAGCAACTTCGAGCGCTTGGGTCTG 240 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 AAGAAGCATCACTGTCGCAGCTGTGGCGAAGGGTTCTGCAACCATTGCTCCAAGCACGAG 300 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 ATGGCCGTACCGAGCCGCGGCTGGAACTATCCGGTGCGCGTGTGCAACAGCTGCTGGAAC 360 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 GACGGTCGAAACGGTGGCACCGTGGGCACGGAAGGGCTGGCCGGTCCGGGGGCAGCCGTG 420 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 AATGGAATGACATCGAACGGGAACCACCATCCTCACCACCGCCATCACTCGCCGGAACAA 480 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 ACGCACCGGAATGCAGAGCGGGAAGAAGTTGCTGACCAAGCGCTTACTGATGAGGCTGAC 540 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 CTCCTCGTGCCGTCTTCTTCTGCAGGCAATAATGGTATCGACGAGGCGAACAACGTGCTG 600 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 GTGCGGCGCTACGGCGAGGCAGTCATCAACACGATCAGCAACATTGGCGCCGTGCTGGAG 660 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 TACCCGAAAGATTTTATCAAGGAATCGGCCCGCCCATCCTACTGGGTGCCGGATGCGGAG 720 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 GCACCGAACTGCTACATCTGCGAGCTGCTGTTCGGTTCGCCGGAATAGCTGAACGCGCTG 780 consensus_6143#1 ---------------------------------------------AGGCAAGAATCNCNC 15 ** * * * consensus_6143#0 GCAGCACTTTCCAGCCAACCTGCCGCCCCAGCATCAGCAGTAGCGCCCCATGCCTCCGGA 840 consensus_6143#1 ACGAGGCGCTCGAGCAGGCTTTACAGTG-AGCA-CAG-AGTAGGAGCA---GCCTCTTGA 69 * * ** *** * * * **** *** ***** * ***** ** consensus_6143#0 ACATCGACACCGGCGACAGCAGCGTCGCCTGCCAAGCGGGGCGAGAGCGGTGCCGCCGAT 900 consensus_6143#1 CCAGCCAAGGTCACGA----AGCGACACTCCGCTAGCGTACAGGCAGCGCAGGCACGG-- 123 ** * * *** **** * * * **** * **** * * * * consensus_6143#0 CCGGTGGCCCGGTCGGGCGGTGGAACCCTGCGCTC-CTCGGGCGGTGGCGCATCCGTTCC 959 consensus_6143#1 CAGGCAGGCAGGCAAAGCTTTGCATGTTTACGTTTACGCGGTTGCTGGCGA--TGGTGAG 181 * ** * * ** ** ** * * ** * * *** * ***** ** consensus_6143#0 CCCGAAGGCTGGCGTTGCTGGTGTGCCGCCGGC-CCAACGTTCGGCAGCCGGCTCAGCGT 1018 consensus_6143#1 GAAGCCTTCTGGTTTCGCCG-CGAACAGTGTGTGTTAGTGTGCGTGAGT-GAATTTTCTT 239 * **** * ** * * * * * * ** ** ** * * * * consensus_6143#0 CGTACCGTTCGGCGATCGATCGCCGGAGGCACCACTGCCGGGCGTGTGGGAATGCGGTCT 1078 consensus_6143#1 GCTAAAGT--AACCCCCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTA 297 ** ** * * * ** ** * ** ******** * *** consensus_6143#0 GTGCCGGCTGCTCGCAGAACCGTCGGCCCGTACCGAAACGGGGCTGGCTGAGTGATGTGC 1138 consensus_6143#1 GTGACAA--AACAACAAA--TGTGTGTGTTTAGCCAAAAGAAAAAGAAAAACAAACGACA 353 *** * ** * ** * ** * *** * * * * * consensus_6143#0 GCGTCTGCAACAGCTGCTACACGGCGGAAGATTAGGCGCGTTCCTAGGGCGAGCACGTTG 1198 consensus_6143#1 ACAAC-GCTTCAAGCTTGAGGTGGTGGC-GACAGCGTGGCATTCTAGGGCACGACTGCCG 411 * * ** ** * ** ** ** * * * ******* * * * consensus_6143#0 CCTGCTACCAGTAGTTTGTAAGATTTCCATCAGAAACTCGTTTCCAATCCCCAACCCCAC 1258 consensus_6143#1 AACG--ACCAAAAATGTG-ATGATATTTACC-----TTTGTTTTCAAACACTTTTTTTAC 463 * **** * * ** * *** * * * * **** *** * * ** consensus_6143#0 AAACCCGTTCTCGCGGATCGTTGACACCCAGCGTTTAGCAAATTATTAGTACAATTTGTA 1318 consensus_6143#1 TAGCTCTTAGCTTATGAATATTGATAATGA---TTTTG---ATTGTTTGTTTAATTTGTG 517 * * * * ** **** * * *** * *** ** ** ******* consensus_6143#0 GCTTGCTT-TCCGTTGTGCGCGCTAGCGTGAATGTATGTGAAACCTTCCTGGATATATCC 1377 consensus_6143#1 TTNAAGTGGTCCTGTGTACACCTTATTT-------------------------------- 545 * *** *** * * ** consensus_6143#0 TTCCTTCCAAACAAAAGAAAACACCGCGGCACCAGGCTGCCGCCCCCAAAAGCTCAAGCT 1437 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 TCTTCTCAAGCCCTCTCTTCCCCTGTTTGGCATTTCCACCCGTGTGGGCGGGGGGTTAGT 1497 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 GACAAAACAACAAATGTGTGTGTT 1521 consensus_6143#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||