cluster # 6144

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Anopheles gambiae
cluster # 6144 cluster # 6144 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6144#0 length = 938 sequences # 3

consensus_6144#1 length = 498 sequences # 1
consensus_6144#2 length = 334 sequences # 1

consensusID : consensus_6144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 938
fasta sequence

                              [AAACACAGTAGTAACAGAGAGCGTTAGGAATGAAAACAAAAAAAGAAGAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAAAGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAAAACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAAGAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTCGGGTTTCGGGGCATTGCGCTCAGCAAAGCATTACTTTCAAGTCTTGTAAAGCAACTAATATGACGCAAAACGGATTAATACATAGCCAATAGTGTGAGCGTGTTTCTCTGTAACCCCTTGTTTTAGAAGAATGGGTTTGCGTGGAAAAAAATGGAATTGTGTCTGTTGAAATTGGGGGAAGAAAACCCTCACACTAAAACAGCAAAAGGCAACCGAAAGCTCCATGAAAGCTGTAAGCAATCAAGCGAAACAAGGAAAAGGGGGAAAGGAGCGTGACGGTGGTGTGTCCCTATGTTACTTGTGTATAATGTAAGCTGTAATAAGAAAACAAGTAATACTAGCGCATGAGAAAAG]

[+] EMBL BX604184             [AAACACAGTAGTAACAGAGAGCGTTAGGAATGAAAACAAAAAAAGAAGAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAAAGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAAAACATATTTATTTATATAATTAAACAATCTAATGGACAC                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM651064             [                                                                     ccGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAAAGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAGAACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAAGAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX612877             [                                                                                                                                                                                                                                   TGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGCTGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAAAACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAAGAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTCGGGTTTCGGGGCATTGCGCTCAGCAAAGCATTACTTTCAAGTCTTGTAAAGCAACTAATATGACGCAAAACGGATTAATACATAGCCAATAGTGTGAGCGTGTTTCTCTGTAACCCCTTGTTTTAGAAGAATGGGTTTGCGTGGAAAAAAATGGAATTGTGTCTGTTGAAATTGGGGGAAGAAAACCCTCACACTAAAACAGCAAAAGGCAACCGAAAGCTCCATGAAAGCTGTAAGCAATCAAGCGAAACAAGGAAAAGGGGGAAAGGAGCGTGACGGTGGTGTGTCCCTATGTTACTTGTGTATAATGTAAGCTGTAATAAGAAAACAAGTAATACTAGCGCATGAGAAAAG]




>consensus_6144#0
AAACACAGTAGTAACAGAGAGCGTTAGGAATGAAAACAAAAAAAGAAGAGATGAAAAGTT
AAAGTCCACAAGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAA
AGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAA
TACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGT
GCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGT
GTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGC
GTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGATGC
TGTGGTCGTATGAGTATAACAATTTGTTTTTAATTTTAACGAACTGTGATGTAAAAAACA
TATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAAGAA
AAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTCGGGTTTCGGGGCATTG
CGCTCAGCAAAGCATTACTTTCAAGTCTTGTAAAGCAACTAATATGACGCAAAACGGATT
AATACATAGCCAATAGTGTGAGCGTGTTTCTCTGTAACCCCTTGTTTTAGAAGAATGGGT
TTGCGTGGAAAAAAATGGAATTGTGTCTGTTGAAATTGGGGGAAGAAAACCCTCACACTA
AAACAGCAAAAGGCAACCGAAAGCTCCATGAAAGCTGTAAGCAATCAAGCGAAACAAGGA
AAAGGGGGAAAGGAGCGTGACGGTGGTGTGTCCCTATGTTACTTGTGTATAATGTAAGCT
GTAATAAGAAAACAAGTAATACTAGCGCATGAGAAAAG

consensusID : consensus_6144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [CCGCCGGGCTTGCGGTGCTGGTCCCGCGCTCGAACTAGATTTCCAATAAGTTTATCGTCTTTATCGCTTACATAAAGCTTGTTATTACATTTTCATTAGACTGAAACGTGTTGGGCCATTGGTGGTTATTTATCGCTAGACAGATAAAAGAGACAGCAAGGGAGGGAGAGCATGGAAAGGAGAAAGGAAAGGTGCACGATACATTCTGCAAAGGAAAGGGTGTAAACTGCTAATACAACAGACACACACAAAGAGAGAAGTGTGCGAGAAAGATAAAATCTAAACCTGTTTCTAGTGAAATTAGCCGTAGTTAAAGTGAAATTTTAAAAAGCAAAACTACACAAAAAGGGGGAGATAGCAGAAACGGAGAAAGAAACTACACCAGAAAACCTAAATATACTAAAGGAGAACGAGAGAAACACAGTAGTAACAGAGAGTGTTAGGAATGAAAAAAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGG]

[+] EMBL BM634409             [CCGCCGGGCTTGCGGTGCTGGTCCCGCGCTCGAACTAGATTTCCAATAAGTTTATCGTCTTTATCGCTTACATAAAGCTTGTTATTACATTTTCATTAGACTGAAACGTGTTGGGCCATTGGTGGTTATTTATCGCTAGACAGATAAAAGAGACAGCAAGGGAGGGAGAGCATGGAAAGGAGAAAGGAAAGGTGCACGATACATTCTGCAAAGGAAAGGGTGTAAACTGCTAATACAACAGACACACACAAAGAGAGAAGTGTGCGAGAAAGATAAAATCTAAACCTGTTTCTAGTGAAATTAGCCGTAGTTAAAGTGAAATTTTAAAAAGCAAAACTACACAAAAAGGGGGAGATAGCAGAAACGGAGAAAGAAACTACACCAGAAAACCTAAATATACTAAAGGAGAACGAGAGAAACACAGTAGTAACAGAGAGTGTTAGGAATGAAAAAAGATGAAAAGTTAAAGTCCACAAGTAATGTTTTGTGTATGTTTGG]




>consensus_6144#1
CCGCCGGGCTTGCGGTGCTGGTCCCGCGCTCGAACTAGATTTCCAATAAGTTTATCGTCT
TTATCGCTTACATAAAGCTTGTTATTACATTTTCATTAGACTGAAACGTGTTGGGCCATT
GGTGGTTATTTATCGCTAGACAGATAAAAGAGACAGCAAGGGAGGGAGAGCATGGAAAGG
AGAAAGGAAAGGTGCACGATACATTCTGCAAAGGAAAGGGTGTAAACTGCTAATACAACA
GACACACACAAAGAGAGAAGTGTGCGAGAAAGATAAAATCTAAACCTGTTTCTAGTGAAA
TTAGCCGTAGTTAAAGTGAAATTTTAAAAAGCAAAACTACACAAAAAGGGGGAGATAGCA
GAAACGGAGAAAGAAACTACACCAGAAAACCTAAATATACTAAAGGAGAACGAGAGAAAC
ACAGTAGTAACAGAGAGTGTTAGGAATGAAAAAAGATGAAAAGTTAAAGTCCACAAGTAA
TGTTTTGTGTATGTTTGG

consensusID : consensus_6144#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [GGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGAAGGTGCTGGGACAAGGAAAAGTATAGAAATGAAGCAAATAATAAAAACA]

[+] EMBL BX610182             [GGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAATACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGAAGGTGCTGGGACAAGGAAAAGTATAGAAATGAAGCAAATAATAAAAACA]




>consensus_6144#2
GGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAAT
ACACCATTCGCTTTAGCTAACGAGTTCGGCGTGATGTCCATCTCTGTGTGTGCGTGCGTG
CGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGCGTG
TGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAGGCG
TAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGAAGGTGCTGGGACAAG
GAAAAGTATAGAAATGAAGCAAATAATAAAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6144#0      AAACACAGTAGTAACAGAGAGCGTTAGGAATGAAAACAAAAAAAGAAGAGATGAAAAGTT 60
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      ------------------------------------------------------------
                                                                                  

consensus_6144#0      AAAGTCCACAAGTAATGTTTTGTGTATGTTTGGTTTTTTTAAAGCAAAAGCAGAAAAAAA 120
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      ------------------------------------------------------------
                                                                                  

consensus_6144#0      AGGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAA 180
consensus_6144#2      -GGATAAGAAAGGGACAATAGATACACACGCACACAAACGCGCTCACACACGCACACAAA 59
consensus_6144#1      --------------CCGCCGGGCTTGCGGTGCTGGTCCCGCGCTCGAACTAGATTTCCAA 46
                                     *    *     *           *******  **  *    * **

consensus_6144#0      TACACCATTCG-CTTTAGCTAACGAGTTCGGCGTGATGTC-CATCTCTGTGTGTGCGTGC 238
consensus_6144#2      TACACCATTCG-CTTTAGCTAACGAGTTCGGCGTGATGTC-CATCTCTGTGTGTGCGTGC 117
consensus_6144#1      TAAGTTTATCGTCTTTATCGCTTACATAAAGCTTGTTATTACATTTTCAT-TAGACTGAA 105
                      **      *** ***** *       *   ** ** * *  *** *   * *   *    

consensus_6144#0      GTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGC 298
consensus_6144#2      GTGCGTGCGTGTATGTGTGCTCCCGATAGGCCTGTACCACTGTATGTATGTGTAGCGCGC 177
consensus_6144#1      ACGTGTTGGGCCATTGGTGGTTATT-TATCGCTAGACAGATAAAAGAGACAGCAAGG-GA 163
                        * **  *   **  *** *     **   **  **   *  * *     * *  * * 

consensus_6144#0      GTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAG 358
consensus_6144#2      GTGTGTGTATGTCAAGTATGTATGTGTGTGTGTGTAGTACGGACTACCAAAAAATAAAAG 237
consensus_6144#1      GGGAGAGCATGGAAAGGA-GAAAGGAAAGGTGCACGATACATTCTGC---AAAGGAAAGG 219
                      * * * * ***  *** * * * *     ***     ***   ** *   ***  *** *

consensus_6144#0      GCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGTAAGGACAGTGAT 418
consensus_6144#2      GCGTAGAAAGTAGAAGAAGGTCACAGCGAAGTGGACAGGCAGAGGTGAAGGTGCTGGGAC 297
consensus_6144#1      GTGTAAACTGCTAATACA----ACAGACACACACAAAGAGAGAAGTGTGCGAG-AAAGAT 274
                      * *** *  *   *   *    ****  *     * **  *** ***   *      ** 

consensus_6144#0      GCTGTGGTCGTATGAGTATAACAATTT-GTTTTTAATTTTAACGAACTGTGATGTAAAAA 477
consensus_6144#2      AAGG-------AAAAGTATAGAAATGAAGCAAATAATAAAAACA---------------- 334
consensus_6144#1      AAAATCTAAACCTGTTTCTAGTGAAATTAGCCGTAGTTAAAGTGAAATTT----TAAAAA 330
                                      * **   *         ** *   *                   

consensus_6144#0      ACATATTTATTTATATAATTAAACAATCTAATGGACACACACACACACACCAAGGCTAAA 537
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      GCAAAACTACACAAAAAGGGGGAGA---TAGCAGAAACGGAGAAAGAAACTACACCAGAA 387
                                                                                  

consensus_6144#0      GAAAAAGGCTCCTTCGATGGTGTTTGATTTTTCGCCCTCTTCGCCTCGGGTTTCGGGGCA 597
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      AACCTAAATATACTAAAGGAGAACGAGAGAAACACAGTAGTAACAGAGAGTGTTAGGA-A 446
                                                                                  

consensus_6144#0      TTGCGCTCAGCAAAGCATTACTTTCAAGTCTTGTAAAGCAACTAATATGACGCAAAACGG 657
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      TGAAAAAAGATGAAAAGTTAAAGTCCA--CAAGTAATGTTTTGTGTATGTTTGG------ 498
                                                                                  

consensus_6144#0      ATTAATACATAGCCAATAGTGTGAGCGTGTTTCTCTGTAACCCCTTGTTTTAGAAGAATG 717
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      ------------------------------------------------------------
                                                                                  

consensus_6144#0      GGTTTGCGTGGAAAAAAATGGAATTGTGTCTGTTGAAATTGGGGGAAGAAAACCCTCACA 777
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      ------------------------------------------------------------
                                                                                  

consensus_6144#0      CTAAAACAGCAAAAGGCAACCGAAAGCTCCATGAAAGCTGTAAGCAATCAAGCGAAACAA 837
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      ------------------------------------------------------------
                                                                                  

consensus_6144#0      GGAAAAGGGGGAAAGGAGCGTGACGGTGGTGTGTCCCTATGTTACTTGTGTATAATGTAA 897
consensus_6144#2      ------------------------------------------------------------
consensus_6144#1      ------------------------------------------------------------
                                                                                  

consensus_6144#0      GCTGTAATAAGAAAACAAGTAATACTAGCGCATGAGAAAAG 938
consensus_6144#2      -----------------------------------------
consensus_6144#1      -----------------------------------------