cluster # 6147

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Anopheles gambiae
cluster # 6147 cluster # 6147 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6147#0 length = 1146 sequences # 3

consensus_6147#1 length = 598 sequences # 1
consensus_6147#2 length = 303 sequences # 1

consensusID : consensus_6147#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1146
fasta sequence

                              [TAAATTTAAATAATTCATAAACTATACGTCTTTTATTTTGATCATCTTTATACAGCTTTCTGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAGTTTCCTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGCTGTGCCCAGCGCTCGTACCAGACACGCTCTGTTCTGTGTGCCGGTCAGTTCTACGAACGGAGCGAAAAATAATTTACCATTTGCGCTTTCCTTTTTCAGTGTTTAAAATACGAAACGAAACAAGAAACAGGAAGAAAAAAAAACCAGCGACAACACAACAAGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTCTCTGTGACTACCTGATCAGCGGAGAAGGAGGTTAATAAGGCACATTTGTTGTTTGCCGATCTCGCCTAGATCCGGGATCCGGGCTGGCATTTCCTACTACAACGGGTTTCGTGTTTGCTTAAAATTTGGCACTAAAATCACTACGACCACCACGATGGGGCAGAAATTATTGGTACCTGGTTGCTCGTACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGTTACACCGCAACATCGCTATCGATCTCGTTTGGCCGTACCGCTGCGTGGAAGCTCGGTGTTAAATTATTTAATAACTAAAGGACACAAACACACCCCAGCACACACACACACACACACACACACACAGACAACACGTACGCGCTGGAAGAAGTCACTATTACTTAAAGTACAAAATCACATTGACATCTCCAGCGCCTGTCCCGGCAATATTGTGCATCCGGTTCAACCGGTGCCAGTTGGGATATGGGTTTGACGGCATCGGGCACCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCAGTTTCGAGCTTTTTTGTCACTGAACGTGTCGCCGGGCCGCTTGGGCAGGAGAGGATCTTCCGCCGAAATGCCGTTGTTGTTGTCCGATTCTTTCTGAGCAAGTGCTCGTGCTTCCTCCTCCTGTTTGGCCTTCACCGTTTCCGGCGTCAGTGTGCCATTGTTAACGCTCTCGATCGCCGTTCGCAGCTCCTTCAGCGCGACCACACCGACCAGACGGCCAACGTTCGTTACGTACGCATGGTTGATGCCAA]

[+] EMBL BM613826             [TAAATTTAAATAATTCATAAACTATACGTCTTTTATTTTGATCATCTTTATACAGCTTTCTGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAGTTTCCTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGCTGTGCCCAGCGCTCGTACCAGACACGCTCTGTTCTGTGTGCCGGTCAGTTCTACGAACGGAGCGAAAAATAATTTACCATTTGCGCTTTCCTTTTTCAGTGTTTAAAATACGAAACGAAACAAGAAACAGGAAGAAAAAAAAACCAGCGACAACACAACAAGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTCTCTGTGACTACCTGATCAGCGGAGAAGGAGGTTAATAAGGCACATTTGTTGTTTGCCGATCTCGCCTAGATCCGGGATCCGGGCTGGCATTTCCTACTACAACGGGTTTCGTGTTTGCTTAAAATTTGGCACTAAAATCACTACGACCACCACGATGGGGCAGAAATTATTGGTACCTGGTTGCTCGTACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGTTACACCGCAACATCGCTATCGATCTCGTTTGGCCGTACCGCTGCGTGGAAGCTCGGTGTTAAATTATTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BM628889             [ AAATTTAAATAATTCATAAACTATACGTCTTTTATTTTGATCATCTTTATACAGCTTTCTGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAGTTTCCTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGCTGTGCCCAGCGCTCGTACCAGACACGCTCTGTTCTGTGTGCCGGTCAGTTCTACGAACGGAGCGAAAAATAATTTACCATTTGCGCTTTCCTTTTTCAGTGTTTAAAATACGAAACGAAACAAGAAACAGGAAG AAAAAAAACCAGCGACAACACAACAAGCTTACAGTATCGCTAACATAACCATCTACGCgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BX628096             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAACATCGCTATCGATCTCGTTTGGCCGTACCGCTGCGTGG AGCTCGGTGTTAAATTATTTAATAACTAAAGGACACAAACACACCCCAGCACACACACACACACACACACACACACAGACAACACGTACGCGCTGGAAGAAGTCACTATTACTTAAAGTACAAAATCACATTGACATCTCCAGCGCCTGTCCCGGCAATATTGTGCATCCGGTTCAACCGGTGCCAGTTGGGATATGGGTTTGACGGCATCGGGCACCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCAGTTTCGAGCTTTTTTGTCACTGAACGTGTCGCCGGGCCGCTTGGGCAGGAGAGGATCTTCCGCCGAAATGCCGTTGTTGTTGTCCGATTCTTTCTGAGCAAGTGCTCGTGCTTCCTCCTCCTGTTTGGCCTTCACCGTTTCCGGCGTCAGTGTGCCATTGTTAACGCTCTCGATCGCCGTTCGCAGCTCCTTCAGCGCGACCACACCGACCAGACGGCCAACGTTCGTTACGTACGCATGGTTGATGCCAA]




>consensus_6147#0
TAAATTTAAATAATTCATAAACTATACGTCTTTTATTTTGATCATCTTTATACAGCTTTC
TGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAGTTTC
CTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGCTGTGCCCAGCGCTCGTACCAGACA
CGCTCTGTTCTGTGTGCCGGTCAGTTCTACGAACGGAGCGAAAAATAATTTACCATTTGC
GCTTTCCTTTTTCAGTGTTTAAAATACGAAACGAAACAAGAAACAGGAAGAAAAAAAAAC
CAGCGACAACACAACAAGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTCT
CTGTGACTACCTGATCAGCGGAGAAGGAGGTTAATAAGGCACATTTGTTGTTTGCCGATC
TCGCCTAGATCCGGGATCCGGGCTGGCATTTCCTACTACAACGGGTTTCGTGTTTGCTTA
AAATTTGGCACTAAAATCACTACGACCACCACGATGGGGCAGAAATTATTGGTACCTGGT
TGCTCGTACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGTTACA
CCGCAACATCGCTATCGATCTCGTTTGGCCGTACCGCTGCGTGGAAGCTCGGTGTTAAAT
TATTTAATAACTAAAGGACACAAACACACCCCAGCACACACACACACACACACACACACA
CAGACAACACGTACGCGCTGGAAGAAGTCACTATTACTTAAAGTACAAAATCACATTGAC
ATCTCCAGCGCCTGTCCCGGCAATATTGTGCATCCGGTTCAACCGGTGCCAGTTGGGATA
TGGGTTTGACGGCATCGGGCACCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCAGTTTC
GAGCTTTTTTGTCACTGAACGTGTCGCCGGGCCGCTTGGGCAGGAGAGGATCTTCCGCCG
AAATGCCGTTGTTGTTGTCCGATTCTTTCTGAGCAAGTGCTCGTGCTTCCTCCTCCTGTT
TGGCCTTCACCGTTTCCGGCGTCAGTGTGCCATTGTTAACGCTCTCGATCGCCGTTCGCA
GCTCCTTCAGCGCGACCACACCGACCAGACGGCCAACGTTCGTTACGTACGCATGGTTGA
TGCCAA

consensusID : consensus_6147#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [ACACAANCANGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTCTCTGTGACTACCTGATCAGCGGAGAAGGAGGNTAATAAGGCACATTTGTTGTTTGCCGATCTCGCCTAGATCCGGGATCCGGGCTGGCATNTCNTACTAGAACGGGTTTCGTGTTTGCTTAAAATTTGGCACTAAAATCACTACGACCACCACGATGGGGCAGAAATTATTGGTACCTGGTTGCTCGTACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGTTACACCGCAACATCGCTATCGATCTCGTTTGGCCGTACCGCTGCGTGGAGCTCGGTGTTAAATTATTTAATAACTAAAGGACACAAACACACCCCAGCACACACACACACACAGACAACACGTACGCGCTGGAAGAAGTCACTATTACTTAAAGTAAAAATCACATTGACATCTCCAGCGCCTGTCCCGGCAATATTGTGCATCCGGTTCAACCGGTGCCAGTTGGGATATGGGTTTGACGGCATCGGGCACCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCAGTTTCGAGCTTTTTTGTCACTGAA]

[-] EMBL BX619513             [ACACAANCANGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTCTCTGTGACTACCTGATCAGCGGAGAAGGAGGNTAATAAGGCACATTTGTTGTTTGCCGATCTCGCCTAGATCCGGGATCCGGGCTGGCATNTCNTACTAGAACGGGTTTCGTGTTTGCTTAAAATTTGGCACTAAAATCACTACGACCACCACGATGGGGCAGAAATTATTGGTACCTGGTTGCTCGTACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGTTACACCGCAACATCGCTATCGATCTCGTTTGGCCGTACCGCTGCGTGGAGCTCGGTGTTAAATTATTTAATAACTAAAGGACACAAACACACCCCAGCACACACACACACACAGACAACACGTACGCGCTGGAAGAAGTCACTATTACTTAAAGTAAAAATCACATTGACATCTCCAGCGCCTGTCCCGGCAATATTGTGCATCCGGTTCAACCGGTGCCAGTTGGGATATGGGTTTGACGGCATCGGGCACCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCAGTTTCGAGCTTTTTTGTCACTGAA]




>consensus_6147#1
ACACAANCANGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTCTCTGTGAC
TACCTGATCAGCGGAGAAGGAGGNTAATAAGGCACATTTGTTGTTTGCCGATCTCGCCTA
GATCCGGGATCCGGGCTGGCATNTCNTACTAGAACGGGTTTCGTGTTTGCTTAAAATTTG
GCACTAAAATCACTACGACCACCACGATGGGGCAGAAATTATTGGTACCTGGTTGCTCGT
ACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGTTACACCGCAAC
ATCGCTATCGATCTCGTTTGGCCGTACCGCTGCGTGGAGCTCGGTGTTAAATTATTTAAT
AACTAAAGGACACAAACACACCCCAGCACACACACACACACAGACAACACGTACGCGCTG
GAAGAAGTCACTATTACTTAAAGTAAAAATCACATTGACATCTCCAGCGCCTGTCCCGGC
AATATTGTGCATCCGGTTCAACCGGTGCCAGTTGGGATATGGGTTTGACGGCATCGGGCA
CCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCAGTTTCGAGCTTTTTTGTCACTGAA

consensusID : consensus_6147#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [CNAGGCAGAATNGCCCGAGGTNATAACTATACGTCTTTATTTTGATCATCTTTATACAGCTTTCTGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAGTTTCCTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGGCTGTGCCAGCGCGCGTAACCCAGGACACGCTCTGGTCTGTCTGCGGGTCAGTTCTACGAAACCGGAGGCCGAAAAAAATAATTTTACCATTTTGGCGCTTTCCCTTTTTTCCAGCGTGGTTTTAAAAAATTACCGGAAAAACG]

[+] EMBL AL697251             [CNAGGCAGAATNGCCCGAGGTNATAACTATACGTCTTTATTTTGATCATCTTTATACAGCTTTCTGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAGTTTCCTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGGCTGTGCCAGCGCGCGTAACCCAGGACACGCTCTGGTCTGTCTGCGGGTCAGTTCTACGAAACCGGAGGCCGAAAAAAATAATTTTACCATTTTGGCGCTTTCCCTTTTTTCCAGCGTGGTTTTAAAAAATTACCGGAAAAACG]




>consensus_6147#2
CNAGGCAGAATNGCCCGAGGTNATAACTATACGTCTTTATTTTGATCATCTTTATACAGC
TTTCTGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAG
TTTCCTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGGCTGTGCCAGCGCGCGTAACC
CAGGACACGCTCTGGTCTGTCTGCGGGTCAGTTCTACGAAACCGGAGGCCGAAAAAAATA
ATTTTACCATTTTGGCGCTTTCCCTTTTTTCCAGCGTGGTTTTAAAAAATTACCGGAAAA
ACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6147#0      TAAATTTAAATAATTCATAAACTATACGTCTTTTATTTTGATCATCTTTATACAGCTTTC 60
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      TGTCTTACGTTGCTAGAGTTTAAAAACTACCCTCATTCACAACACAGGCAGGAGAGTTTC 120
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      CTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGCTGTGCCCAGCGCTCGTACCAGACA 180
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      CGCTCTGTTCTGTGTGCCGGTCAGTTCTACGAACGGAGCGAAAAATAATTTACCATTTGC 240
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      GCTTTCCTTTTTCAGTGTTTAAAATACGAAACGAAACAAGAAACAGGAAGAAAAAAAAAC 300
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      CAGCGACAACACAAC-AAGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTC 359
consensus_6147#1      --------ACACAANCANGCTTACAGTATCGCTAACATAACCATCTACGCTGACTGACTC 52
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      TCTGTGACTACCTGATCAGCGGAGAAGGAGGTTAATAAGGCACATTTGTTGTTTGCCGAT 419
consensus_6147#1      TCTGTGACTACCTGATCAGCGGAGAAGGAGGNTAATAAGGCACATTTGTTGTTTGCCGAT 112
consensus_6147#2      -----------CNAGGCAGAATNGCCCGAGGTNATAACTATACGTCTTTATTTTGATCAT 49
                                 *    ***    *   ****  *  *    ** * * *  ****   **

consensus_6147#0      CTC-GCCTAGATCCGGGATCCGGGCTGGCATTTCCTACTACAACGGGTTTCGTGTTTGCT 478
consensus_6147#1      CTC-GCCTAGATCCGGGATCCGGGCTGGCATNTCNTACTAGAACGGGTTTCGTGTTTGCT 171
consensus_6147#2      CTTTATACAGCTTTCTGTCTTACGTTGCTAGAGTTTA--AAAACTACCCTCATTCACAAC 107
                      **      ** *    *      * **  *     **  * ***     ** *       

consensus_6147#0      TAAAATTTGGCACTAAAATCACTACGACCAC--CACGATGGGGCAGAAATTATTGGTACC 536
consensus_6147#1      TAAAATTTGGCACTAAAATCACTACGACCAC--CACGATGGGGCAGAAATTATTGGTACC 229
consensus_6147#2      ACAGGCAGGAGAGTTTCCTGGTTCCGGTCGCGCCACGCACCGACCAATCTTGGCTGTGCC 167
                        *     *  * *    *   * **  * *  ****    * *  *  **    ** **

consensus_6147#0      TGGTTGCTCGTACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGT 596
consensus_6147#1      TGGTTGCTCGTACCGTGAACGAAGCTCTTGATCATCCCACACCCAACGAACCCGTTTAGT 289
consensus_6147#2      AG--CGCGCGTAACCCAGGACACGCTCTGGTCTGTCT---GCGGGTCAGTTCTACGAAAC 222
                       *   ** **** *       * ***** *    **     *    *    *     *  

consensus_6147#0      TACACCGCAACATCGCTATCGATCTCGTTTGGCCG-TACCGCTGCGTGGAAGCTCGGTGT 655
consensus_6147#1      TACACCGCAACATCGCTATCGATCTCGTTTGGCCG-TACCGCTGCGTGGA-GCTCGGTGT 347
consensus_6147#2      CGGAGGCCGAAAAAAATAATTTTACCATTTTGGCGCTTTCCCTTTTTTCCAGCGTGGTTT 282
                         *   * * *    **    *  * *** * ** *  * **   *    **  *** *

consensus_6147#0      TAAATTATTTAATAACTAAAGGACACAAACACACCCCAGCACACACACACACACACACAC 715
consensus_6147#1      TAAATTATTTAATAACTAAAGGACACAAACACACCCCAGCACACACACA----------- 396
consensus_6147#2      TAAAAAATT----ACCGGAAAAACG----------------------------------- 303
                      ****  ***    * *  **  **                                    

consensus_6147#0      ACACACAGACAACACGTACGCGCTGGAAGAAGTCACTATTACTTAAAGTACAAAATCACA 775
consensus_6147#1      -CACACAGACAACACGTACGCGCTGGAAGAAGTCACTATTACTTAAAGTA-AAAATCACA 454
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      TTGACATCTCCAGCGCCTGTCCCGGCAATATTGTGCATCCGGTTCAACCGGTGCCAGTTG 835
consensus_6147#1      TTGACATCTCCAGCGCCTGTCCCGGCAATATTGTGCATCCGGTTCAACCGGTGCCAGTTG 514
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      GGATATGGGTTTGACGGCATCGGGCACCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCA 895
consensus_6147#1      GGATATGGGTTTGACGGCATCGGGCACCATGTTTTCGCTGTCTGTCTTTCCGTCGATTCA 574
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      GTTTCGAGCTTTTTTGTCACTGAACGTGTCGCCGGGCCGCTTGGGCAGGAGAGGATCTTC 955
consensus_6147#1      GTTTCGAGCTTTTTTGTCACTGAA------------------------------------ 598
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      CGCCGAAATGCCGTTGTTGTTGTCCGATTCTTTCTGAGCAAGTGCTCGTGCTTCCTCCTC 1015
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      CTGTTTGGCCTTCACCGTTTCCGGCGTCAGTGTGCCATTGTTAACGCTCTCGATCGCCGT 1075
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      TCGCAGCTCCTTCAGCGCGACCACACCGACCAGACGGCCAACGTTCGTTACGTACGCATG 1135
consensus_6147#1      ------------------------------------------------------------
consensus_6147#2      ------------------------------------------------------------
                                                                                  

consensus_6147#0      GTTGATGCCAA 1146
consensus_6147#1      -----------
consensus_6147#2      -----------