cluster # 6149

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Anopheles gambiae
cluster # 6149 cluster # 6149 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6149#0 length = 951 sequences # 4

consensus_6149#1 length = 665 sequences # 1

consensusID : consensus_6149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 951
fasta sequence

                              [GAATTCGCCCCAGGGTTNAGCAGGTTCAATGCAATGCTTCCAGATGATATGCGATNATCACTATCTCGAACTGAATGAGCCATACCTACAAATGAATGCCGAAAAGATGGAACGAGGTGATACCGATTACCTGGCTAATCTCGG-CCTCCAGAAGAACCAGCACCAGCGGCACCAAACTATGTCAATGGCATCATTTTACCTCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAAACCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAGTAAGGTTGGTGGTGTTGGACGGGCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGATCAGCAATCCGGGCTGCATGGCGCTCCGTATGGTGGATGAGAAGCGGTGTTAGTGATAGTACTGCAAGTACGGTTAGCCATTTTGTAAGGCAAATCATCCTTCCTGGCGGTGGTCCATTTTTAGTCTTGCATTCGATTTGCGCTCTCCGGGCAACCTGAAACCTGGCCACACTTTAACGTTGAAAACTTAATACTTAAGAAATTAGCCTATGAACACAAAACTCCAACCCTCATACGAAAGAAAGGAGCATAGCTTACATGAAAAAAAGATGCGTGTTTATTTTTATACAAACTTTATACCGCTGTGCCCTACATTGTCAGTAAGTCAGTAAAGGGTAAGTGTACATAGTTGA]

[+] EMBL AL697613             [GAATTCGCCCCAGGGTTNAGCAGGTTCAATGCAATGCTTCCAGATGATATGCGATNATCACTATCTCGAACTGAATGAGCCATACCTACAAATGAATGCCGAAAAGATGGAACGAGGTGATACCGATTACCTGGCTAATCTCGG CCTCCAGAAGAACCAGCACCAGCGGCACCAAACTATGTCAATGGCATCATTTTACCTCTGCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCCCGCACAAAGTCCGAGTCGGAGGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCG CCAACGGCAGCAAACGGCACAAGAAGCGGGG CTGCTGGAGGAAATTCCCATGCTCGATGGAAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCTAAACCGCGCGAACGCACAAGCAAGCACAA CCGGAGCCGGAGTATATAAACGTGAAAGGA                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS08OIP             [                                                         TCACTATCTCGAACTGAATGAGCCATACCTACAAATGACTGCCGAAAAGATGGAACGAGGTGATACCGATTACCTGGCTAATCTTGGCCCTCCAGAAGAACCAGCACCAGCGGCACCAAACTATGTTAATGGCATCATTTTACCTCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGTCATTCGCCCACGATACGAAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CNS08OIQ             [                                                                                                                                                                                                         TCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTACCTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTCAACAGCGATCGTCATTCGCCCACGATACGAAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAAGCCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAGTAAGGTTGGTGGTGTTGGACGGGCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGATCAGCAATCCGGGCTGCATGGCGCTCCGTATGGTGGATGAG                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AGA281289            [                                                                                                                                                                                                                                                                                               ACTTTGCCTCGTTCAACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCGCCCAACGGCAGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGGTTATCGTCCACGGCGAACGGGTTCAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAAACCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAGTAAGGTTGGTGGTGTTGGACGGGCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGATCAGCAATCCGGGCTACATTGCGCTCAGTATGGTGGATGAGAAGCGGTGTTAGTGATAGTACTGCAAGTACGGTTAGCCATTTTGTAAGGCAAATCATCCTTCCTGGCGGTGGTCCATTTTTAGTCTTGCATTCGATTTGCGCTCTCCGGGCAACCTGAAACCTGGCCACACTTTAACGTTGAAAACTTAATACTTAAGAAATTAGCCTATGAACACAAAACTCCAACCCTCATACGAAAGAAAGGAGCATAGCTTACATGAAAAAAAGATGCGTGTTTATTTTTATACAAACTTTATACCGCTGTGCCCTACATTGTCAGTAAGTCAGTAAAGGGTAAGTGTACATAGTTGA]




>consensus_6149#0
GAATTCGCCCCAGGGTTNAGCAGGTTCAATGCAATGCTTCCAGATGATATGCGATNATCA
CTATCTCGAACTGAATGAGCCATACCTACAAATGAATGCCGAAAAGATGGAACGAGGTGA
TACCGATTACCTGGCTAATCTCGGCCTCCAGAAGAACCAGCACCAGCGGCACCAAACTAT
GTCAATGGCATCATTTTACCTCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTAC
CTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTC
AACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCGCCCAACGGC
AGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGG
TTATCGTCCACGGCGAACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAAA
CCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAGT
AAGGTTGGTGGTGTTGGACGGGCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGATC
AGCAATCCGGGCTGCATGGCGCTCCGTATGGTGGATGAGAAGCGGTGTTAGTGATAGTAC
TGCAAGTACGGTTAGCCATTTTGTAAGGCAAATCATCCTTCCTGGCGGTGGTCCATTTTT
AGTCTTGCATTCGATTTGCGCTCTCCGGGCAACCTGAAACCTGGCCACACTTTAACGTTG
AAAACTTAATACTTAAGAAATTAGCCTATGAACACAAAACTCCAACCCTCATACGAAAGA
AAGGAGCATAGCTTACATGAAAAAAAGATGCGTGTTTATTTTTATACAAACTTTATACCG
CTGTGCCCTACATTGTCAGTAAGTCAGTAAAGGGTAAGTGTACATAGTTGA

consensusID : consensus_6149#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CAACACGGAAGTGACCGCCATGACATCGGTTGAAGTGGAAGACTTGAACTCGGTCAATTCGAATGAGCCGCTATGGCGCTCCAACTACGGCATGGACTACAAGGGACCGGCACGCACCGTCAACACGACCGATCTGGTTTGCTGGGCGTCACAGATTGCCTGCGGCATGGAGTATCTGGCATCGCGCAAGGTACTGCACGGTGATCTGGCCGCCCGTAACATACTGCTGTGCGACGACAATGTGGTGAAGATCTGTGACTTCGGGTTGGCTCGGTCGATGTACAAGAGCGACAATTACAAGAAGAAGGGTGAAGCACCGCTACCCTTCAAGTGGCTTGCACTGGAATGCATTGGCGACAATGTGTTCAGCACGTACTCGGACGTGTGGGCTTACGGTATAGTGCTGTGGGAGCTGTTTTCACTCGGCAAAGTGCCTTACCCAGGGATGGAGGCGAACCAGGAGCTGTACAATAAGCTGCGCGATGGCTACCGGATGGATAAGCCACAGTACTCGAACCAAGACATTTACGATATTATGCTGAACTGCTGGAACGTGAAGCCTGATTCGCGACCATCGTTTAAGGATCTGAAGAGCAGGTTCAATGCAATGCTTCCCGGATGATATGCGAGATCACTATCTCGAACTGAATGAGCCATACCTACAA]

[+] EMBL BX601866             [CAACACGGAAGTGACCGCCATGACATCGGTTGAAGTGGAAGACTTGAACTCGGTCAATTCGAATGAGCCGCTATGGCGCTCCAACTACGGCATGGACTACAAGGGACCGGCACGCACCGTCAACACGACCGATCTGGTTTGCTGGGCGTCACAGATTGCCTGCGGCATGGAGTATCTGGCATCGCGCAAGGTACTGCACGGTGATCTGGCCGCCCGTAACATACTGCTGTGCGACGACAATGTGGTGAAGATCTGTGACTTCGGGTTGGCTCGGTCGATGTACAAGAGCGACAATTACAAGAAGAAGGGTGAAGCACCGCTACCCTTCAAGTGGCTTGCACTGGAATGCATTGGCGACAATGTGTTCAGCACGTACTCGGACGTGTGGGCTTACGGTATAGTGCTGTGGGAGCTGTTTTCACTCGGCAAAGTGCCTTACCCAGGGATGGAGGCGAACCAGGAGCTGTACAATAAGCTGCGCGATGGCTACCGGATGGATAAGCCACAGTACTCGAACCAAGACATTTACGATATTATGCTGAACTGCTGGAACGTGAAGCCTGATTCGCGACCATCGTTTAAGGATCTGAAGAGCAGGTTCAATGCAATGCTTCCCGGATGATATGCGAGATCACTATCTCGAACTGAATGAGCCATACCTACAA]




>consensus_6149#1
CAACACGGAAGTGACCGCCATGACATCGGTTGAAGTGGAAGACTTGAACTCGGTCAATTC
GAATGAGCCGCTATGGCGCTCCAACTACGGCATGGACTACAAGGGACCGGCACGCACCGT
CAACACGACCGATCTGGTTTGCTGGGCGTCACAGATTGCCTGCGGCATGGAGTATCTGGC
ATCGCGCAAGGTACTGCACGGTGATCTGGCCGCCCGTAACATACTGCTGTGCGACGACAA
TGTGGTGAAGATCTGTGACTTCGGGTTGGCTCGGTCGATGTACAAGAGCGACAATTACAA
GAAGAAGGGTGAAGCACCGCTACCCTTCAAGTGGCTTGCACTGGAATGCATTGGCGACAA
TGTGTTCAGCACGTACTCGGACGTGTGGGCTTACGGTATAGTGCTGTGGGAGCTGTTTTC
ACTCGGCAAAGTGCCTTACCCAGGGATGGAGGCGAACCAGGAGCTGTACAATAAGCTGCG
CGATGGCTACCGGATGGATAAGCCACAGTACTCGAACCAAGACATTTACGATATTATGCT
GAACTGCTGGAACGTGAAGCCTGATTCGCGACCATCGTTTAAGGATCTGAAGAGCAGGTT
CAATGCAATGCTTCCCGGATGATATGCGAGATCACTATCTCGAACTGAATGAGCCATACC
TACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6149#0      GAATTCGCCCCAGGGTTNAGCAGGTTCAATGCAATGCTTCCAGATGATATGCGATNATCA 60
consensus_6149#1      ------------------------------------------------------------
                                                                                  

consensus_6149#0      CTATCTCGAACTGAATGAGCCATACCTACAAATGAATGCCGAAAAGATGGAACGAGGTGA 120
consensus_6149#1      ------------------------------------------------------------
                                                                                  

consensus_6149#0      TACCGATTACCTGGCTAATCTCGGCCTCCAGAAGAACCAGCACCAGCGGCACCAAACTAT 180
consensus_6149#1      ------------------------------------------------------------
                                                                                  

consensus_6149#0      GTCAATGGCATCATTTTACCTCTTCCACCGATTTCGGAGATTCGTAACGACAAGGACTAC 240
consensus_6149#1      -----------------------------------------------CAACACGGAA--- 10
                                                                     * *** ***    

consensus_6149#0      CTGAAGATGTCACGCACAAAGTCCGAGTCGGAAGAGAGCAACTTTGACTTTGCCTCGTTC 300
consensus_6149#1      --GTGACCGCCATG-ACATCGGTTGAAGTGGAAGACTTGAACTCGG--TCAATTCGAATG 65
                        *     * ** * ***  *   **   ******    ****  *  *         * 

consensus_6149#0      AACAGCGATCGCCATTCGCCCACGATACGCAACAATCTCGACACTAGTCCGCCCAACGGC 360
consensus_6149#1      AGCCGCTATGGCGCTCCAACTACGGCATGGACTA--CAAGGGACCGGCACGCACCGTCAA 123
                      * * ** ** **  * *  * ***  * * *  *  *  *  **  *  *** *      

consensus_6149#0      AGCAAACGGCACAAGAAGCGGGGCCTGCCGGAGGAAATCCCCATGCTCGATGGGAACCGG 420
consensus_6149#1      CACGACCGATCTGGTTTGCTGGGCGTCACAGA----TTGCCTGCGG-CATGGAGTATCTG 178
                        * * **         ** **** *  * **     * **   *  *   * * * * *

consensus_6149#0      TTATCGTCCACGGCGA-ACGGGTTTAACTCCGATTCCGAAACGGAACCGGTCAGTCCGAA 479
consensus_6149#1      GCATCGCGCAAGGTACTGCACGGTGATCTGGCCGCCCGTAACATA--CTGCTGTGCGACG 236
                        ****  ** **     *  * * * **      *** ***  *  * *     *    

consensus_6149#0      ACCGCGCGAACGCACAAGCAAGCACAACCCGGAGCCGGAGTATATAAACGTGAAAGGAAG 539
consensus_6149#1      ACAATGTGG-----TGAAGATCTGTGACTTCGGGTTGGC-TCGGTCGATGTACAAGAGCG 290
                      **   * *        *  *      **   * *  **  *   *  * **  ***   *

consensus_6149#0      TAAGGTTGGTGGTGTTGGACGG-GCACCGCTGTGTGACGACGAGCTGAGCCAGGAAGCGA 598
consensus_6149#1      ACAATTACAAGAAGAAGGGTGAAGCACCGCTACCCTTCAAGTGGCTTGCACTGGAATGCA 350
                        *  *    *  *  **  *  ********      * *   ***    * ****   *

consensus_6149#0      TCAGCAATCCGGGCTGCATGGCGCTCCGTATGGTGGATGAGAAGCGGTGTTAGTGATAGT 658
consensus_6149#1      TTGGCGA--CAATGTGTTCAGCACGTACTCGGACGTGTG------GGCTTACGGTATAGT 402
                      *  ** *  *    **    ** *    *  *  *  **      **  *  *  *****

consensus_6149#0      ACTGCAAGTACGGTTAGCCATTTTGTAAGGCAAATCATCCTTCCTGGCGGTGGTCCATTT 718
consensus_6149#1      GCTGTGGGAGCTGTTT-TCACTCGGCAAAGTGCCTTACCCAGG--GATGGAGGCGAACCA 459
                       ***   *  * ***   ** *  * ** *    * * **     *  ** **   *   

consensus_6149#0      TTAGTCTTGCATTCGATTTGCGCTCTCCGGGCAACCTGAAACCTGGCCACACTTTAACGT 778
consensus_6149#1      GGAGCTGTACAAT-AAGCTGCGCGAT---GGCTACCGGA----TGGATAAGCCACAGTAC 511
                        **   * ** *  *  *****  *   *** *** **    ***  *  *   *    

consensus_6149#0      TGAAAACTTAATACTTAAGAAATTAGCCTATGAACACAAAACTCCAACCCTCATACGAAA 838
consensus_6149#1      TCGAACCAAGACATTTACGATATTATGCTGAACTGCTGGAACGTGAAGCCTGATTCGC-- 569
                      *  ** *   * * *** ** ****  **          ***   ** *** ** **   

consensus_6149#0      GAAAGGAGCATAGCTTACATGAAAAAAAGATGCGTGTTTATTTTTATACAAACTTTATAC 898
consensus_6149#1      -----GACCATCGTTTA-AGGATCTGAAGA-GCAGGTTCAATGCAATGCTTCCCGGATGA 622
                           ** *** * *** * **    **** **  *** * *   ** *   *   **  

consensus_6149#0      CGCTGTGCCCTACATTGTCAGTAAGTCAGTAAAGGGTAAGTGTACATAGTTGA 951
consensus_6149#1      TA-TGCGAGAT-CACTATCTCGAACTGAATGAGCCATACCTACAA-------- 665
                         ** *   * ** * **   ** * * * *    **  *  *