cluster # 615

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Anopheles gambiae
cluster # 615 cluster # 615 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_615#0 length = 689 sequences # 1

consensus_615#1 length = 642 sequences # 1

consensusID : consensus_615#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CCGGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTGCGCTCGCCTACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGGGAAAAAGCAAGGCGAGTAAAAAGAAAATGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGAAAGCCCCTATCTCTCAACCCTTTCCCACACACACACGTACACACACACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAACAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTACTTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAATCAACAACAACATCAAACGTGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAGCAACAAAAACAACAAAAAAAACCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAAAAACGTAAGCAAACGCAAGAAAAGCTGAAATGCTATAAGTATATGAACAAAGCAACGGTGTAAAGG]

[+] EMBL BM620756             [CCGGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTGCGCTCGCCTACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGGGAAAAAGCAAGGCGAGTAAAAAGAAAATGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGAAAGCCCCTATCTCTCAACCCTTTCCCACACACACACGTACACACACACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAACAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTACTTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAATCAACAACAACATCAAACGTGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAGCAACAAAAACAACAAAAAAAACCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAAAAACGTAAGCAAACGCAAGAAAAGCTGAAATGCTATAAGTATATGAACAAAGCAACGGTGTAAAGG]




>consensus_615#0
CCGGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTT
CTAACCTGCGCTCGCCTACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTA
GTGAGGAGGTCACGGCGAGGAGAGAGGGAAAAAGCAAGGCGAGTAAAAAGAAAATGGAAG
AAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGA
AAGCCCCTATCTCTCAACCCTTTCCCACACACACACGTACACACACACACGTGTGCGCGT
ATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAACAAAAAAACG
AAACGAAAATCGATTTTCGAACGAACGCATCAACTACTTTTTAAGTATTTTATAAATATT
TAAAATGAAGGCAAATCAACAACAACATCAAACGTGTGTGTGTGTGTGTTTGTGTGAATG
TGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAA
GAGAAGAAGCAACAAAAACAACAAAAAAAACCCCCAAGTGATGTTTAGTGTGTGTAAGAG
CAAAAGCTAAGCAAAAGCATAAAAAACGTAAGCAAACGCAAGAAAAGCTGAAATGCTATA
AGTATATGAACAAAGCAACGGTGTAAAGG

consensusID : consensus_615#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CAATTACAATTAGGCAGAGCAAAACAAAGCCGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGAGAAAAAGCAGCGAGTAATAAGAAAAAGGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGTAAGCCCCTATCTCTCAACCCTTTCCCAGACACACACACACACACGTACACACACCCACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAGCAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTTCCCTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAACCAACAACAACATCAAACGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAACCACCACCAAAAACCCCCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAACA]

[+] EMBL BM646566             [CAATTACAATTAGGCAGAGCAAAACAAAGCCGGTAGAGGATGCAGAGCAAATCGCAGAATCGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTCGCGTGCCGAGTCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGAGAAAAAGCAGCGAGTAATAAGAAAAAGGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATACGTTTATATAGGTAAGCCCCTATCTCTCAACCCTTTCCCAGACACACACACACACACGTACACACACCCACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCGCCGCAAACAAAAGCAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTTCCCTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAACCAACAACAACATCAAACGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAACCACCACCAAAAACCCCCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAACA]




>consensus_615#1
CAATTACAATTAGGCAGAGCAAAACAAAGCCGGTAGAGGATGCAGAGCAAATCGCAGAAT
CGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTCGCGTGCCGAGTCCAATCTTTCGTA
CCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGAGAAAAAGCAGCGAGTAATA
AGAAAAAGGGAAGAAAAACACGATTGAAAAAACAATACAAACAAATTACACTCTAGAATA
CGTTTATATAGGTAAGCCCCTATCTCTCAACCCTTTCCCAGACACACACACACACACGTA
CACACACCCACACGTGTGCGCGTATTACTATTGCAAGATGCAAACGATTGATATGCATCG
CCGCAAACAAAAGCAAAAAAACGAAACGAAAATCGATTTTCGAACGAACGCATCAACTTC
CCTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAACCAACAACAACATCAAACGTG
TGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGGGTGGAAAAGGCTCGGTTT
AAAAACCAGTAATGGAAGAAAAGAGAAGAAACCACCACCAAAAACCCCCCCCAAGTGATG
TTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCATAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_615#0      ----------------------------CCGGGTAGAGGATGCAGAGCAAATCGCAGAAT 32
consensus_615#1      CAATTACAATTAGGCAGAGCAAAACAAAGCCGGTAGAGGATGCAGAGCAAATCGCAGAAT 60
                                                  * *****************************

consensus_615#0      CGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCTGCGCTCGCCTACCTCGCGTGCCGAG 92
consensus_615#1      CGAATTTTCAAGCGTATTTTTCTTCCTTCTAACCT--------------CGCGTGCCGAG 106
                     ***********************************              ***********

consensus_615#0      TCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGGGAAAA 152
consensus_615#1      TCCAATCTTTCGTACCAGAGAGATACTAGTGAGGAGGTCACGGCGAGGAGAGAGAGAAAA 166
                     ****************************************************** *****

consensus_615#0      AGCAAGGCGAGTAAAAAGAAAATGG-AAGAAAAACACGATTGAAAAAACAATACAAACAA 211
consensus_615#1      AGCA--GCGAGTAATAAGAAAAAGGGAAGAAAAACACGATTGAAAAAACAATACAAACAA 224
                     ****  ******** ******* ** **********************************

consensus_615#0      ATTACACTCTAGAATACGTTTATATAGGAAAGCCCCTATCTCTCAACCCTTTCCCA---- 267
consensus_615#1      ATTACACTCTAGAATACGTTTATATAGGTAAGCCCCTATCTCTCAACCCTTTCCCAGACA 284
                     **************************** ***************************    

consensus_615#0      ----CACACACACGTACACACAC--ACACGTGTGCGCGTATTACTATTGCAAGATGCAAA 321
consensus_615#1      CACACACACACACGTACACACACCCACACGTGTGCGCGTATTACTATTGCAAGATGCAAA 344
                         *******************  ***********************************

consensus_615#0      CGATTGATATGCATCGCCGCAAACAAAAACAAAAAAACGAAACGAAAATCGATTTTCGAA 381
consensus_615#1      CGATTGATATGCATCGCCGCAAACAAAAGCAAAAAAACGAAACGAAAATCGATTTTCGAA 404
                     **************************** *******************************

consensus_615#0      CGAACGCATCAACTACT-TTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAATCAAC 440
consensus_615#1      CGAACGCATCAACTTCCCTTTTAAGTATTTTATAAATATTTAAAATGAAGGCAAACCAAC 464
                     ************** *  ************************************* ****

consensus_615#0      AACAACATCAAACGTGTGTGTGTGTGTGTTTGTGTGAATGTGGAAAAAGGGTGGGGAAGG 500
consensus_615#1      AACAACATCAAACGTGTGTGTGTGTGT--TTGTGTGAATGTGGAAAAAGGGTGGGGAAGG 522
                     ***************************  *******************************

consensus_615#0      GTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAGCAACAAAAACA 560
consensus_615#1      GTGGAAAAGGCTCGGTTTAAAAACCAGTAATGGAAGAAAAGAGAAGAAACCAC-----CA 577
                     ************************************************ * **     **

consensus_615#0      ACAAAAAAAACCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCAT 620
consensus_615#1      CCAAAAACCCCCCCCAAGTGATGTTTAGTGTGTGTAAGAGCAAAAGCTAAGCAAAAGCAT 637
                      ******   **************************************************

consensus_615#0      AAAAAACGTAAGCAAACGCAAGAAAAGCTGAAATGCTATAAGTATATGAACAAAGCAACG 680
consensus_615#1      AAACA------------------------------------------------------- 642
                     *** *                                                       

consensus_615#0      GTGTAAAGG 689
consensus_615#1      ---------