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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 999 fasta sequence
[GTGTATGTGTGTCTCTGTGTGTGTATGTAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTATTTTTGAATAAGTATATGCGAGCGGGGGACAGTGCACACTCTCCCGAACCACCGCACCTTATACACCAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGAAAACCCCCCGACGACCAACGTATGTGCGTCCACCCCCCCCCTTTATATCCCCTCGTTAGTGTGTAGTGTGTTTAATGTATATTTATTTAAAACAAAGAAAAGAAAAACAAACGAAAACCTTCAAACAACTTACCACCGGATGTGTCGTGTGGGGAGCGTTTCTCCTCGCTCCCTCCACCACAACGCAAAGATCTCTTATGTGAGCGCACCCGGCTATTATGATGATGTAGCGGAGGACGGGTCTCTTGTTGCGATAATGATGATGATGATGATGATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAAAGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGTGCGGCGAAAAGGGAAAAGGAAAGGGGCAGTAGTGTGTCTCACCCTTCCCCGACAGCTTGGTAAAGACTGCAGTCGATTTAAATCAGCACAACTACTGCTGGGAAAAGCTACATTGTTGTAGCTTAACCTTTTTGGTAGAGATCACCATTCAGGGGCTCAAGTACGACTCTCCCTCCACGCCTAGGGAAACGATCCTCGCTAGGATCGCTAGCTTTGCTGGACGTGTGTGGGTTCGTATTCGTTTTTACTTGGCCTCTTTTTTTGGCACATTTGAAACTGTTTGGATTTGGTTTTCGGTAGCGAGAAAACAGCGAAATTAATGTGTATGTAGTACGTACCGCCACATTACCCAATTAACCGAAAATAGACGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTGAAGCGTTAACATGCGTAGGGA]
[+] EMBL BX626436 [GTGTATGTGTGTCTCTGTGTGTGTATGTAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTATTTTTGAATAAGTATATGCGAGCGGGGGACAGTGCACACTCTCCCGAACCACCGCACCTTATACACCAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGAAAACCCCCCGACGACCAACGTATGTGCGTCCACCCCCCCCCTTTATATCCCCTCGTTAGTGTGTAGTGTGTTTAATGTATATTTATTTAAAACAAAGAAAAGAAAAACAAACGAAAACCTTCAAACAACTTACCACCGGATGTGTCGTGTGGGGAGCGTTTCTCCTCGCTCCCTCCACCACAACGCAAAGATCTCTTATGTGAGCGCACCCGGCTATTATGATGATGTAGCGGAGGACGGGTCTCTTGTTGCGATAATGATGATGATGATGATGATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAAAGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGTGCGGCGAAAAGGGAAAAGGAAAGGGGCAGTAGTGTGTCTCACCCTTCCCCGACAGCTTGGTAAAGACT ]
[+] EMBL BM652549 [ ccgtgATGATGATGATGATGATGATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAAAGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGTGCGGCGAAAAGGG AAAGG AAGGAGCAGTAGTGTCTCTCA CCTTCCCCGACAGCTTGGTAAAGACTGCAGTCGATTTAAATCAGCACAACTACTGCTGGGAAAAGCTACATTGTTGTAGCTTAACCTTTTTGGTAGAGATCACCATTCAGGGGCTCAAGTACGACTCTCCCTCCACGCCTAGGGAAACGATCCTCGCTAGGATCGCTAGCTTTGCTGGACGTGTGTGGGTTCGTATTCGTTTTTACTTGGCCTCTTTTTTTGGCACATTTGAAACTGTTTGGATTTGGTTTTCGGTAGCGAGAAAACAGCGAAATTAATGTGTATGTAGTACGTACCGCCACATTACCCAATTAACCGAAAATAGACGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTGAAGCGTTAACATGCGTAGGGA]
consensusID : consensus_6154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 810 fasta sequence
[GCTCAGGCAGAATCCCCGCGGTTAATTAACGTCTATGTAGTACGTACCGCCATTACCAATTAACCGAAAATAGATGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTTTAAAGAGTTGACCTGCGTAGGGATGGTGAANTGAACATTGTANAAGGCGTTTCCAAAGAGTGAAAATNACTGGGCNATGGGAAATTAGGGATTTNNCCAACAATTAAGGTTCCATTGTTAACCCCATTTGGATTCCCTTCTTCCTTCCAATTTGGCAAAGGTTTAACCCCATTAAGGCCCAACGAAAACCAATTCCAACGTTTTTCCCCACCAAGTTTGGGGGCATTTNTGGACATTTCCGGGTCAGCAAAAACACGGGTTGGAATTCCGGCCGGGTTCGCAATTAATTTCAGGGGTATCACACCCCCCCGGTAACAACCCGGAACTTATAAAGGCAAGGACCCGGAAACCAACACGGCCTGGTAAACGCAACACCCNCGGAGTCATCATGGGTCNCTATAAACANTTCCCGACAAGANGTCNGCAACACTTTACCTNTNTCTAAANTTCNCCCTTTGGGGGAANTTTCACCGGGCTCACCTTGGNGGCCGCNGCANNCAAATACAAGGCGTGGAAACACCACACTTATTCCCCAACAGTTAAANCGCCCCAAAGAGGGACCAACACAACACAGGGTTCCCANTCACGTTAAAAGCCNCGAACAACGACAGGGCAACAACAAATTTGGGCTATTGGNGCACCCTATTNCCGCTCAAAGTTTTAGGGCTTACCCNGNCGCCCTACCAGTAGTATNAC]
[+] EMBL AL696418 [GCTCAGGCAGAATCCCCGCGGTTAATTAACGTCTATGTAGTACGTACCGCCATTACCAATTAACCGAAAATAGATGCAATCCAGGATGATGAGAATTGGACACACGTGGACGTTTAAAGAGTTGACCTGCGTAGGGATGGTGAANTGAACATTGTANAAGGCGTTTCCAAAGAGTGAAAATNACTGGGCNATGGGAAATTAGGGATTTNNCCAACAATTAAGGTTCCATTGTTAACCCCATTTGGATTCCCTTCTTCCTTCCAATTTGGCAAAGGTTTAACCCCATTAAGGCCCAACGAAAACCAATTCCAACGTTTTTCCCCACCAAGTTTGGGGGCATTTNTGGACATTTCCGGGTCAGCAAAAACACGGGTTGGAATTCCGGCCGGGTTCGCAATTAATTTCAGGGGTATCACACCCCCCCGGTAACAACCCGGAACTTATAAAGGCAAGGACCCGGAAACCAACACGGCCTGGTAAACGCAACACCCNCGGAGTCATCATGGGTCNCTATAAACANTTCCCGACAAGANGTCNGCAACACTTTACCTNTNTCTAAANTTCNCCCTTTGGGGGAANTTTCACCGGGCTCACCTTGGNGGCCGCNGCANNCAAATACAAGGCGTGGAAACACCACACTTATTCCCCAACAGTTAAANCGCCCCAAAGAGGGACCAACACAACACAGGGTTCCCANTCACGTTAAAAGCCNCGAACAACGACAGGGCAACAACAAATTTGGGCTATTGGNGCACCCTATTNCCGCTCAAAGTTTTAGGGCTTACCCNGNCGCCCTACCAGTAGTATNAC]
consensusID : consensus_6154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCGCGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAAAAAAACCGTTCCCTGTCTAAGCTAAACGTAGACTTTTGGGTGGCATTTAGCTGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTCTTTTTTAAGCTTAAACATTATTGAACTTAGAAGGCAAATGAGTGGCAATTCTGCTCTATCTACTGACGTTTGCTTTTCGGTCTTCCCCATTCGCGTCCACGCGCAATTCCGTCCAATGCTCATCCATTCCCGGATCCCACACACTGGCGACAAGTTTTGGTGGATCTCAAAGTTCGGTGTCTTTCATGTAATAATGTGATCTTCTTTTATTTCCAATTTAAACAAACAAACAAACAAACAAACAAAAAAAACGTATTCTCTCGGTTTGGGTTTTGCTTTAAATTAGGTTGTTGCCCTCCTGTTGGTACAAATCGTTTAAACGCACCGTATGTGTGTGTGTCTGTGTGTGTATATAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTGTGTGTATTTTTTAATGTAAAGTATATGCGAGCGGGGGACAGCGCACACTCTCCCCAAACCACCGCACCTTATACACAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGA]
[+] EMBL BM579881 [CCGCGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAAAAAAACCGTTCCCTGTCTAAGCTAAACGTAGACTTTTGGGTGGCATTTAGCTGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTCTTTTTTAAGCTTAAACATTATTGAACTTAGAAGGCAAATGAGTGGCAATTCTGCTCTATCTACTGACGTTTGCTTTTCGGTCTTCCCCATTCGCGTCCACGCGCAATTCCGTCCAATGCTCATCCATTCCCGGATCCCACACACTGGCGACAAGTTTTGGTGGATCTCAAAGTTCGGTGTCTTTCATGTAATAATGTGATCTTCTTTTATTTCCAATTTAAACAAACAAACAAACAAACAAACAAAAAAAACGTATTCTCTCGGTTTGGGTTTTGCTTTAAATTAGGTTGTTGCCCTCCTGTTGGTACAAATCGTTTAAACGCACCGTATGTGTGTGTGTCTGTGTGTGTATATAGGTACACACGTATCCACTGTGTGTATATGTATGTGTATTAGTGTGTGTTTGTGTGTGTGTATTTTTTAATGTAAAGTATATGCGAGCGGGGGACAGCGCACACTCTCCCCAAACCACCGCACCTTATACACAATATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGA]
consensusID : consensus_6154#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[GCTCGTAGCGTGCCTCACTTGTGCCTGGACATGTTTTATTACTTTTTAACGTGATCAGCAGCCTTGTTTCTTCCCCTCGTAGTCTGGTTGCCTAGAACGATAGGTAATGTGTTTTAGCTTGTCACGGTTTCTTTTTTTTCCGGACCTTCTCCTCGGTTTTGGAAATTACAAAAAAACGCTTGGGAACGGGGCTAATGGTTTTAACGACATGTGTAATTCTAAGCTTTATAAAATGAACTACCCTTTTAGTTTTATCCTTTCGCGGTCATCGCGGCATTGGAGGGCGTGTGTGTGTGTATGTGTCTTGTTCCACTGCAATTCAAACGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAATAACCGCTCCCTGTCTAAGTTAAACGTAGGCATTTGGGTGGCATTTAGCGGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTTTTTTTGTTAAGCTTAAACATTATTGAACTAAGAAGGCAAATGAGTGGCTTGTCTCTATCTACTGACGTTTGCTTTTCGCTCCCCGCGTCATTCGCGTCCACGCGCAATTCCGTCCAATTCTCATCCATTCCCGGATCCCACAC]
[+] EMBL BX615848 [GCTCGTAGCGTGCCTCACTTGTGCCTGGACATGTTTTATTACTTTTTAACGTGATCAGCAGCCTTGTTTCTTCCCCTCGTAGTCTGGTTGCCTAGAACGATAGGTAATGTGTTTTAGCTTGTCACGGTTTCTTTTTTTTCCGGACCTTCTCCTCGGTTTTGGAAATTACAAAAAAACGCTTGGGAACGGGGCTAATGGTTTTAACGACATGTGTAATTCTAAGCTTTATAAAATGAACTACCCTTTTAGTTTTATCCTTTCGCGGTCATCGCGGCATTGGAGGGCGTGTGTGTGTGTATGTGTCTTGTTCCACTGCAATTCAAACGAACAATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAATAACCGCTCCCTGTCTAAGTTAAACGTAGGCATTTGGGTGGCATTTAGCGGAGATTAAAGTAAAGCACCCCTCGGTGTTAATTGCTCGACTTTTTTTGTTAAGCTTAAACATTATTGAACTAAGAAGGCAAATGAGTGGCTTGTCTCTATCTACTGACGTTTGCTTTTCGCTCCCCGCGTCATTCGCGTCCACGCGCAATTCCGTCCAATTCTCATCCATTCCCGGATCCCACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6154#2 ------------------------------------------------------------
consensus_6154#3 ------------------------------------------------------------
consensus_6154#0 GTGTATGTGTGTCTCTGTGTGTGTATGTAGGTACACACGTATCCACTGTGTGTATATGTA 60
consensus_6154#1 ------------------------------------------------------------
consensus_6154#2 ------------------------------------------------------------
consensus_6154#3 ------------------------------------------------------------
consensus_6154#0 TGTGTATTAGTGTGTGTTTGTGTATTTTTGAATAAGTATATGCGAGCGGGGGACAGTGCA 120
consensus_6154#1 ------------------------------------------------------------
consensus_6154#2 ------------------------------------------------------------
consensus_6154#3 ------------------------------------------------------------
consensus_6154#0 CACTCTCCCGAACCACCGCACCTTATACACCAATATCTTGTAGACTTTTAGTAGCAAATC 180
consensus_6154#1 ------------------------------------------------------------
consensus_6154#2 ------------------------------------------------------------
consensus_6154#3 ------------------------------------------------------------
consensus_6154#0 TTTAATAACAGCGAAAACCCCCCGACGACCAACGTATGTGCGTCCACCCCCCCCCTTTAT 240
consensus_6154#1 ----------------------GCTCAGGCAGAATCCCCGCGGTTAATTAACGTCTATGT 38
consensus_6154#2 ----------------------------------------------------CCGCGAAC 8
consensus_6154#3 ------------------------------------------------------GCTCGT 6
consensus_6154#0 ATCCCCT-CGTTAGTGTGTAGTGTGTTTAATGTATATTTATTTAAAACAAAGAAAAGAAA 299
consensus_6154#1 AGTACGTACCGCCATTACCAATTAACCGAAAATAGATGCAATCCAGGATGATGAGAATTG 98
consensus_6154#2 AATT-ACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAAAAAAACCGTT-CCC 66
consensus_6154#3 AGC--GTGCCTCACTTGTGCCTGGACATGTTTTATTACTTTTTAACGTGATCAGCAGCCT 64
consensus_6154#0 AACAAACGAAAACCTTCAAACAACTTACCACCGGATGTGTCGTGTGGGGAGCGTTTCTCC 359
consensus_6154#1 GACACACGTGGACGTTTAAAGAGTTGACCTGCGTAGGGATGGTGAANTGAACATTGTANA 158
* ** * * *
consensus_6154#2 TGTCTAAGCTAAA---CGTAGACTTTTGGGTGGC----ATTTAGCTGAGATTAAAGTAAA 119
consensus_6154#3 TGTTTCTTCCCCT---CGTAGTCT----GGTTGC----CTAGAAC---GAT--AGGTAAT 108
consensus_6154#0 TCGCTCCCTCCAC---CACAACGCAA-AGATCTC----TTATGTGAGCGCACCCGGCTAT 411
consensus_6154#1 AGGCGTTTCCAAAGAGTGAAAATNACTGGGCNATGGGAAATTAGGGATTTNNCCAACAAT 218
* * *
consensus_6154#2 GCACCCCTCGGTGTTAATTGC---TCGACTCTTTTTTAAGCTTAAAC---ATTATTGAAC 173
consensus_6154#3 GTGTTTTAGCTTGTCACGGTT---TCTTTTTTTTCCGGACCTTCTCCTCGGTTTTGGAAA 165
consensus_6154#0 TATGATGATGTAGCGGAGGAC---GGGTCTCTTGTTGCGATAATGATGATGATGATGATG 468
consensus_6154#1 TAAGGTTCCATTGTTAACCCCATTTGGATTCCCTTCTTCCTTCCAAT----TTGGCAAAG 274
* * * *
consensus_6154#2 TTAGAAGGCAAATGAGTGGCAATTCTGCTCTATCTACTGACGTTTGCTTTTCGGTCTTCC 233
consensus_6154#3 TTACAAAA-AAACGCTTGGGAACGGGGCT------AATGGTTTTAACGACATGTGTAATT 218
consensus_6154#0 ATGGAAAACGATGATCTGGGGTTGCACGTGTTTATTCCACCGGTAGGCTAATAGATGAAA 528
consensus_6154#1 GTTTAACCCCATTAAGGCCCAACGAAAACCAATTCCAACGTTTTTCCCCACCAAGTTTGG 334
* ** * *
consensus_6154#2 CCATTCGCGTCCACGCGCAATTCCGTCCAATGCTCATCCATTCCCGGATCCCACA-CACT 292
consensus_6154#3 CTAAGCTTTATAAAATGAACTACCCTTTTAGTTTTATCCTTTCGCGGTCATCGCGGCATT 278
consensus_6154#0 AGCTTTGTATGAAGATATCCGTTCTTGCAACACAAGTTCAGT-GCGGCGAAAAGGGAAAA 587
consensus_6154#1 GGGCATTTNTGGACATTTCCGGGTCAGCAAAAACA--CGGGTTGGAATTCCGGCCGGGTT 392
* * *
consensus_6154#2 GGCGACAAGTTTTGGTGGATCTCAAAGTTCGGTGTCTTTCATGTAATAATGTGATCTTCT 352
consensus_6154#3 GGAGG---GCGTGTGTGTGTGTATGTGTCTTGTTCCACT---GCAAT--TCAAACGAACA 330
consensus_6154#0 GGAAAGGGGCAGTAGTGTGTCTCACCCTTCCCCGACAGCTTGGTAAA--GACTGCAGTCG 645
consensus_6154#1 CGCAATTAATTTCAG-GGGTATCACACCCCCCCGGTAACAACCCGGAACTTATAAAGGCA 451
* * * * * *
consensus_6154#2 TTTATTTCCAATTTAAACAAACAAACAAACAAACAAACAAAAAAAACGTATTCTCTCGGT 412
consensus_6154#3 ATTACGACCAGATTGAAGGCAGACTAAGACTAATGTGTTTAAAATAACCGCTCCCT--GT 388
consensus_6154#0 ATTTAAATCAGCACAACTACTGCTGGGAAAAGCTACATTGTTGTAGCTTAACCTTTTTGG 705
consensus_6154#1 AGGACCCGGAAACCAACACGGCCTGGTAAACGCAACACCCNCGGAGT----CATCATGGG 507
* * * *
consensus_6154#2 TTGGGTTTTGCTTT--AA-ATTAGGTTGTTGCC-CTCCTG---TTGGTACAAATCGTTTA 465
consensus_6154#3 CTAAGTTAAACGTA--GGCATTTGGGTGGCATT-TAGCGGAGATTAAAGTAAAGCACCCC 445
consensus_6154#0 TAGAGATCACCATTCAGGGGCTCAAGTACGACT-CTCCCTCCACGCCTAGGGAAACGATC 764
consensus_6154#1 TCNCTATAAACANTTCCCGACAAGANGTCNGCAACACTTTACCTNTNTCTAAANTTCNCC 567
* * *
consensus_6154#2 AACGCACCGTATGTGTGTGTGTCTGTGTGTGTATATAGGTACACACGTATCCACTGTGTG 525
consensus_6154#3 TCGGTGTTAATTGCTCGACTTTTTTTGT-TAAGCTTAAACATTATTGAACTAAGAAGGCA 504
consensus_6154#0 CTCGCTAGGATCGCTAGCTTTGCTGGACGTGTGTGGGTTCGTATTCGTTTTTACTTGGCC 824
consensus_6154#1 CTTTGGGGGAANTTTCACCGGGCTCACCTTGGNGGCCGCNGCANNCAAATACAAGGCGTG 627
* * * *
consensus_6154#2 TATATGTAT-GTGTATTAGT-GTGTGTTTGTGTGTGTGTATTTTTT--------AATGTA 575
consensus_6154#3 AATGAGTG--GCTTGTCTCT-ATCTACTGACGTTTGCTTTTCGCTC--------CCCGCG 553
consensus_6154#0 TCTTTTTTTGGCACATTTGA-AACTGTTTGGATTTGGTTTTCGGTAGCGAGAAAACAGCG 883
consensus_6154#1 GAAACACCACACTTATTCCCCAACAGTTAAANCGCCCCAAAGAGGGACCAACACAACACA 687
* *
consensus_6154#2 AAGTATATGCGAGCGGGGGACAGCGCACACTCTCCCCAAACCACCGCACCTTATACACAA 635
consensus_6154#3 TCATTCGCGTCCACGCGCAATTCCGTCCAATTCTCATCCATTCCCGGATCCCACAC---- 609
consensus_6154#0 AAATTAATGTGTATGTAGTACGTACCGCCACATTACCCAATTAACCGAAAATAGACGCAA 943
consensus_6154#1 GGGTTCCCANTCACGTTAAAAGCCNCG-AACAACGACAGGGCAACAACAAATTTGGGCTA 746
* * * *
consensus_6154#2 T--ATCTTGTAGACTTTTAGTAGCAAATCTTTAATAACAGCGA----------------- 676
consensus_6154#3 ------------------------------------------------------------
consensus_6154#0 TCCAGGATGATGAGAATTGGACACACGTGGACGTGAAGCGTTAACATGCGTAGGGA---- 999
consensus_6154#1 TTGGNGCACCCTATTNCCGCTCAAAGTTTTAGGGCTTACCCNGNCGCCCTACCAGTAGTA 806
consensus_6154#2 ----
consensus_6154#3 ----
consensus_6154#0 ----
consensus_6154#1 TNAC 810
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||