cluster # 6157

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Anopheles gambiae
cluster # 6157 cluster # 6157 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6157#0 length = 1096 sequences # 4

consensus_6157#1 length = 658 sequences # 1

consensusID : consensus_6157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1096
fasta sequence

                              [CCGCCCACGCGTCCGCATCGATCTAACTGTTAACATCTTGACAATGGGATTTTGGCCAACGTATCCTGTCATGGAGGTTACACTTCCTCAGGAATTATTACAGTATCAATCGATTTTCAACAAATTCTACCTAGCAAAACACAGTGGCCGAAAACTGCAATGGCAGCCAACGCTTGGACATTGCGTACTTAAAGCCCAATTTGATGCGGGACCAAAAGATTTGCAAGTGTCTCTGTTTCAGGCACTAGTGTTGCTGTTGTTCAACTATAATGCTGCTATTACATTCGAAGAAATTCGTGCAGCAGTTAATATAGAGAATGGAGAATTGAAACGCACCTTACAATCGCTCGCTTGTGGAAAGGCACGTGTTTTGACGAAAATACCCAAAGGTCGTGAAGTGGAAAACACTGACAAATTTCAGTTCAACAATGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGAAGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATCAAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGTTAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAACGAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGTATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATTGTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTT--AAACAAAAACAACTGCGAACTATAGGGATATCCAAGGATTCGTCACAAAAATCAAGAAACNACATACACATTGAGAAGCATTCTTTTGTAGTAGACTTTTTTTATCACTAATG-AATGAATTTAAGGAATTTTCGAGTTTCTGTTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGTTCATCGCAACCTACTGAAAAAGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATCCGCATGTACATTTTGTAATAAATCTGCGAAGATCATAT]

[+] EMBL BM620381             [CCGCCCACGCGTCCGCATCGATCTAACTGTTAACATCTTGACAATGGGATTTTGGCCAACGTATCCTGTCATGGAGGTTACACTTCCTCAGGAATTATTACAGTATCAATCGATTTTCAACAAATTCTACCTAGCAAAACACAGTGGCCGAAAACTGCAATGGCAGCCAACGCTTGGACATTGCGTACTTAAAGCCCAATTTGATGCGGGACCAAAAGATTTGCAAGTGTCTCTGTTTCAGGCACTAGTGTTGCTGTTGTTCAACTATAATGCTGCTATTACATTCGAAGAAATTCGTGCAGCAGTTAATATAGAGAATGGAGAATTGAAACGCACCTTACAATCGCTCGCTTGTGGAAAGGCACGTGTTTTGACGAAAATACCCAAAGGTCGTGAAGTGGAAAACACTGACAAATTTCAGTTCAACAATGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGAAGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATCAAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGTTAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAACGAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATA                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX620145             [                                                                                                                                                                                                                                                           TGCTGTTGTTCANCTATAATGCTGCTATTACATTCGAAGAAATTCGTGCAGCAGTTAATATAGAGAATGGAGAATTGAAACGCACCTTACAATCGCTCGCTTGTGGAAAGGCACGTGTTTTGACGAAAATACCCAAAGGTCGTGAAGTGGAAAACACTGACAAATTTCAGTTCAACAATGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGAAGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATCAAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGTTAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAACGAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGTATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATTGTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTTAAAAACAAAAACAACTGCGAACTATAGGGATATCCAAGGATTCGTCACAAAAATCAAGAAACNACATACACATTGAGAAGCATTCTTTTGTAGTAGACTTTTTTTATCACTAATG AATGAATTTAAG                                                                                                                                                         ]
[+] EMBL BX612297             [                                                                                                                                                                                                                                                             CTGTTGTTCAACTATAATGCTGCTATTACATTCGAAGAAATTCGTGCAGCAGTTAATATAGAGAATGGAGAATTGAAACGCACCTTACAATCGCTCGCTTGTGGAAAGGCACGTGTTTTGACGAAAATACCCAAAGGTCGTGAAGTGGAAAACACTGACAAATTTCAGTTCAACAATGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGAAGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATCAAATTGACGCAGCAATTGTCCGCATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX615530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAACGAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGTATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATTGTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTT  TGTTAAAAACAACTGCGAACTATAGGGATATCCAAGGATTCGTCACAAAAATGAAGAAACAACATACACATTGAGAAGCATTCTTTTGTAGTAGACTTTTTTTATCACTAATGAAATGAATTTAAAGAATTTTCGAGTTTCTGTTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGTTCATCGCAACCTACTGAAAAAGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATCCGCATGTACATTTTGTAATAAATCTGCGAAGATCATAT]




>consensus_6157#0
CCGCCCACGCGTCCGCATCGATCTAACTGTTAACATCTTGACAATGGGATTTTGGCCAAC
GTATCCTGTCATGGAGGTTACACTTCCTCAGGAATTATTACAGTATCAATCGATTTTCAA
CAAATTCTACCTAGCAAAACACAGTGGCCGAAAACTGCAATGGCAGCCAACGCTTGGACA
TTGCGTACTTAAAGCCCAATTTGATGCGGGACCAAAAGATTTGCAAGTGTCTCTGTTTCA
GGCACTAGTGTTGCTGTTGTTCAACTATAATGCTGCTATTACATTCGAAGAAATTCGTGC
AGCAGTTAATATAGAGAATGGAGAATTGAAACGCACCTTACAATCGCTCGCTTGTGGAAA
GGCACGTGTTTTGACGAAAATACCCAAAGGTCGTGAAGTGGAAAACACTGACAAATTTCA
GTTCAACAATGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGAA
GGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATCA
AATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGTT
AATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAACG
AATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGTA
TAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATTG
TAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTTAAACAAAAACAACTGCGAACTA
TAGGGATATCCAAGGATTCGTCACAAAAATCAAGAAACNACATACACATTGAGAAGCATT
CTTTTGTAGTAGACTTTTTTTATCACTAATGAATGAATTTAAGGAATTTTCGAGTTTCTG
TTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGTTCATCGCAACCTACTGAAAA
AGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATCCGCATGTACATTTTGTAATAAA
TCTGCGAAGATCATAT

consensusID : consensus_6157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGAAGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATCAAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGTTAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAACGAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGTATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATTGTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTTAAAAACAAAAACAACTGCGAACTATAGGGATATCCAAGGATTCGTCACAAAAATGAAGAAACAACATACACATTGAGAAGCATTCTTTTGTAGTAGACTTTTTTTATCACTAATGAAATGAATTTAAAGAATTTTCGAGTTTCTGTTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGTTCATCGCAACCTACTGAAAAAGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATC]

[+] EMBL BM607377             [CCGCCCACGCGTCCGCCCACGCGTCCGGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGAAGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATCAAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGTTAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAACGAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGTATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATTGTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTTAAAAACAAAAACAACTGCGAACTATAGGGATATCCAAGGATTCGTCACAAAAATGAAGAAACAACATACACATTGAGAAGCATTCTTTTGTAGTAGACTTTTTTTATCACTAATGAAATGAATTTAAAGAATTTTCGAGTTTCTGTTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGTTCATCGCAACCTACTGAAAAAGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATC]




>consensus_6157#1
CCGCCCACGCGTCCGCCCACGCGTCCGGAATTCACCAATAAGTTGTTTAGGATTAAAATA
AATCAAATCCAAATGAAGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATAT
CAAGACCGACAATATCAAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACA
CTTAGTCACAACTTGTTAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCG
GCCGATTTAAAGAAACGAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAG
GATAACCAAAACCAGTATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACG
TTTTACTTTATAAATTGTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTTAAAAA
CAAAAACAACTGCGAACTATAGGGATATCCAAGGATTCGTCACAAAAATGAAGAAACAAC
ATACACATTGAGAAGCATTCTTTTGTAGTAGACTTTTTTTATCACTAATGAAATGAATTT
AAAGAATTTTCGAGTTTCTGTTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGT
TCATCGCAACCTACTGAAAAAGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6157#0      CCGCCCACGCGTCCGCATCGATCTAACTGTTAACATCTTGACAATGGGATTTTGGCCAAC 60
consensus_6157#1      ------------------------------------------------------------
                                                                                  

consensus_6157#0      GTATCCTGTCATGGAGGTTACACTTCCTCAGGAATTATTACAGTATCAATCGATTTTCAA 120
consensus_6157#1      ------------------------------------------------------------
                                                                                  

consensus_6157#0      CAAATTCTACCTAGCAAAACACAGTGGCCGAAAACTGCAATGGCAGCCAACGCTTGGACA 180
consensus_6157#1      ------------------------------------------------------------
                                                                                  

consensus_6157#0      TTGCGTACTTAAAGCCCAATTTGATGCGGGACCAAAAGATTTGCAAGTGTCTCTGTTTCA 240
consensus_6157#1      ------------------------------------------------------------
                                                                                  

consensus_6157#0      GGCACTAGTGTTGCTGTTGTTCAACTATAATGCTGCTATTACATTCGAAGAAATTCGTGC 300
consensus_6157#1      ------------------------------------------------------------
                                                                                  

consensus_6157#0      AGCAGTTAATATAGAGAATGGAGAATTGAAACGCACCTTACAATCGCTCGCTTGTGGAAA 360
consensus_6157#1      ------------------------------------------------------------
                                                                                  

consensus_6157#0      GGCACGTGTTTTGACGAAAATACCCAAAGGTCGTGAAGTGGAAAACACTGACAAATTTCA 420
consensus_6157#1      --------------------------------------------CCGCCCACGCGTCCGC 16
                                                                   * *  **   *    

consensus_6157#0      GTTCA-ACAATGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGA 479
consensus_6157#1      CCACGCGTCCGGAATTCACCAATAAGTTGTTTAGGATTAAAATAAATCAAATCCAAATGA 76
                         *       *************************************************

consensus_6157#0      AGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATC 539
consensus_6157#1      AGGAAACGACGGAAGAACAAAAAGCCACAGAAGAACGTGTATATCAAGACCGACAATATC 136
                      ************************************************************

consensus_6157#0      AAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGT 599
consensus_6157#1      AAATTGACGCAGCAATTGTCCGCATTATGAAGATGAGAAAAACACTTAGTCACAACTTGT 196
                      ************************************************************

consensus_6157#0      TAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAAC 659
consensus_6157#1      TAATCACGGAATTATATAAACAGCTCACTTTTCCAGTTAAGCCGGCCGATTTAAAGAAAC 256
                      ************************************************************

consensus_6157#0      GAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGT 719
consensus_6157#1      GAATCGAATCATTGATAGATCGAGATTATATGGAACGTGATAAGGATAACCAAAACCAGT 316
                      ************************************************************

consensus_6157#0      ATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATT 779
consensus_6157#1      ATAATTACGTTGCCTAATTCCTTTCGTTTACTCTAAAAAATACGTTTTACTTTATAAATT 376
                      ************************************************************

consensus_6157#0      GTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTTAAA--CAAAAACAACTGCGAA 837
consensus_6157#1      GTAAAATTGAGCAGGTGTTTGTGAAAATATCTTTTTTTTAAAAACAAAAACAACTGCGAA 436
                      ******************************************  ****************

consensus_6157#0      CTATAGGGATATCCAAGGATTCGTCACAAAAATCAAGAAACNACATACACATTGAGAAGC 897
consensus_6157#1      CTATAGGGATATCCAAGGATTCGTCACAAAAATGAAGAAACAACATACACATTGAGAAGC 496
                      ********************************* ******* ******************

consensus_6157#0      ATTCTTTTGTAGTAGACTTTTTTTATCACTAATGAA-TGAATTTAAGGAATTTTCGAGTT 956
consensus_6157#1      ATTCTTTTGTAGTAGACTTTTTTTATCACTAATGAAATGAATTTAAAGAATTTTCGAGTT 556
                      ************************************ ********* *************

consensus_6157#0      TCTGTTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGTTCATCGCAACCTACTG 1016
consensus_6157#1      TCTGTTTAAATTCATTCGATTAAAAGATAAGCAAAAAGTAATGTTCATCGCAACCTACTG 616
                      ************************************************************

consensus_6157#0      AAAAAGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATCCGCATGTACATTTTGTAA 1076
consensus_6157#1      AAAAAGGCATTAGACTTGAACTGCTCTTTGATTTTAAACATC------------------ 658
                      ******************************************                  

consensus_6157#0      TAAATCTGCGAAGATCATAT 1096
consensus_6157#1      --------------------