cluster # 6158

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6158 cluster # 6158 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6158#0 length = 859 sequences # 4

consensus_6158#1 length = 178 sequences # 1

consensusID : consensus_6158#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 859
fasta sequence

                              [CCGGTTGCTGCCCGTACCGCCCGCCCGCAAATCGTTATCCGCTTTGGCTCGCTCTCGGCGGCGAAGGGAGAAGCGCCAGCCAGCAATTACCCACCCCCCATCCGAAAACAATTGTAAAAACCAGTTTTGTTTGTCCAGAAAGTGTAGTGTATTGTTTTTCGCCAGCCGTTTCTTCTCTTTTTTTTCATTCCCATTTTCTTGCCCCTCAATGTATGATGCTTGATGTAACCGAACGGTAAGGCACACGGCCGTGTTGTTCCGTTGGGTTGCGCGCGTAGCAAGTCGCTGTGTGTGTTGTGTGTGCGTTTGCGTGTGTGC--GTGTGTGTGTGCTTTTGGCAGGAAAA-CGAAAGAAAATCCGGAGCCCCCCTCCGCCACGGGTAGCCACAATCAATCGCCCGCACCGTCCTCAAGCCGCTCCTGTTGCTCGTCCGGACCGCCACCTGCCCCATCCGCCTGCCAGCGGCCTTTCCTGACGCGTGGATATTGGACGCTTCGGCAGCAGACCAAGAGATAAGGGACACTCCAAGAAGGCACGCCGCACGATGGGACACAC--GGT-G-C-AGGT-GGCTGTCGCCACCCTCAACC-AGTGGGCGATGGACTTTGAGGGCAACGTCGAGCGCATCCTGCTATCGATCAGGCTGGCCGCCGCGAATGGCGCCACCTACCGTACGGGGCCGGAACTGGAGGTTAGCGGGTACAGCTGCGAGGACCACTTCCACGAGCCGGACACGTACCTGCACTGCTGGGAGGCGCTGGTCGAGATCATACAGTCGCCCTGCTGCCCGCCCGGCATGCTGAATCGACGTGGGCATGCCGGTGCAGCACCGGAACGTTGCGTACAACTGTCGCGTCGCGTTCCACA]

[+] EMBL BM598942             [CCGGTTGCTGCCCGTACCGCCCGCCCGCAAATCGTTATCCGCTTTGGCTCGCTCTCGGCGGCGAAGGGAGAAGCGCCAGCCAGCAATTACCCACCCCCCATCCGAAAACAATTGTAAAAACCAGTTTTGTTTGTCCAGAAAGTGTAGTGTATTGTTTTTCGCCAGCCGTTTCTTCTCTTTTTTTTCATTCCCATTTTCTTGCCCCTCAATGTATGATGCTTGATGTAACCGAACGGTAAGGCACACGGCCGTGTTGTTCCGTTGGGTTGCGCGCGTAGCAAGTCGCTGTGTGTGTTGTGTGTGCGTTTGCGTGTGTGCGTGTGTGTGTGTGCTTTTGGCAGGAAAA CGAAAGAAAATCCGGAGCCCCCCTCCGCCACGGGTAGCCACAATCAATCGCCCGCACCGTCCTCAAGCCGCTCCTGTTGCTCGTCCGGACCGCCACCTGCCCCATCCGCCTGCCAGCGGCCTTTCCTGACGCGTGGATATTGGACGCTTCGGCAGCAGACCAAGACATAAGGGACACTCCAAGAAGGCACGCCGCACGATGGGACACAC  GGT G C AGGT GGCTGTCGCCACCCTCAACC AGTGGGCGATGGACTTTGAGGGCAACGTCGAGCGCATCCTGCTATCGATCAGGCTGGCCGCCGCGAATGGCGCCACCTACCGTACGGGGC                                                                                                                                                                                           ]
[+] EMBL BM581332             [               ccgGCCCGCCCGCAAATCGTTATCCGCTTTGGCTCGCTCTCGGCGGCGAAGGGAGAAGCGCCAGCCAGCAATTACCCACCCCCCATCCGAAAACAATTGTAAAAACCAGTTTTGTTTGTCCAGAAAGTGTAGTGTATTGTTTTTCGCCAGCCGTTTCT  TCTTTTTTTTCATTCCCATTTTCTTGCCCCTCAATGTATGATGCTTGATGTAACCGAACGGTAAGGCACACGGCCGTGTTGTTCCGTTGGGTTGCGCGCGTAGCAAGTCGCTGTGTGTGTTGTGTGTGCGTTTGCGTGTGTGC  GTGTGTGTGTGCTTTTGGCAGGAAAA CGAAAGAAAATCCGGAGCCCCCCTCCGCCACGGGTAGCCACACTCAATCGCCCGCACCGTCCTCAAGCCGCTCCTGTTGCTCGTCCGGACCGCCACCTGCCCCATCCGCCTGCCAGCGGCCTTTCCTGACGCGTGGATATTGGACGCTTCGGCAGCAGACCAAGAGATAAGGGACACTCCAAGAAGGCACGCCGCACGATGGGAAACACCGGGTGG CAAGGTGGGCTGTCGCCACCCTCAACCAAGTGGGCGATGGACTTTGAGGGGAACGTCGAGCGCATCCTGCTATCGATC                                                                                                                                                                                                                                   ]
[+] EMBL AGA282771            [                                                                                                                                                                                                                                                                                                                       TGTGTGC  GTGTGTGTGTGCTTTTGGCAGGAAAA CGAAAGAAAATCCGGAGCCCCCCTCCGCCACGGGTAGCCACACTCAATCGCCCGCACCGTCCTCAAGCCGCTCCTGTTGCTCGTCCGGACCGCCACCTGCCCCATCCGCCTGCCAGCGGCCTTTCCTGACGCGTGGATATTGGACGCTTCGGCAGCAGACCAAGAGATAAGGGACACTCCAAGAAGGCACGCCGCACGATGGGACACAC  GGT G C AGGT GGCTGTCGCCACCCTCAACC AGTGGGCGATGGACTTTGAGGGGAACGTCGAGCGCATCCTGCTATCGATTAGGCTGGCCGCCGCGAATGGCGCCACCTACCGTACGGGGCCG                                                                                                                                                                                         ]
[+] EMBL BM604612             [                                                                                                                                                                                                                                                                                                                                     ccgGTGCTTTTGGCAGGAAAACCGAAAGAAAATCCGGAGCCCCCCTCCGCCACGGGTAGCCACAATCAATCGCCCGCACCGTCCACAAGCCGCTCCTGTTGCTCGTCCGGACCGCCACCTGCCCCATCCGCCTGCCAGCGGCCTTTCCTGACGCGTGGATATTGGAAG    AGCAGCAGACCAAGAGATAAGGGACACTCCAAGAAGGCACGCCGCACGATGGGACACACG GGT GAC AGGT GGCTGTCGCCACCCTCAACC AGTGGGCGATGGACTTTGAGGGCAACGTCGAGCGCATCCTGCTATCGATCAGGCTGGCCGCCGCGAATGGCGCCACCTACCGTACGGGGCCGGAACTGGAGGTTAGCGGGTACAGCTGCGAGGACCACTTCCACGAGCCGGACACGTACCTGCACTGCTGGGAGGCGCTGGTCGAGATCATACAGTCGCCCTGCTGCCCGCCCGGCATGCTGAATCGACGTGGGCATGCCGGTGCAGCACCGGAACGTTGCGTACAACTGTCGCGTCGCGTTCCACA]




>consensus_6158#0
CCGGTTGCTGCCCGTACCGCCCGCCCGCAAATCGTTATCCGCTTTGGCTCGCTCTCGGCG
GCGAAGGGAGAAGCGCCAGCCAGCAATTACCCACCCCCCATCCGAAAACAATTGTAAAAA
CCAGTTTTGTTTGTCCAGAAAGTGTAGTGTATTGTTTTTCGCCAGCCGTTTCTTCTCTTT
TTTTTCATTCCCATTTTCTTGCCCCTCAATGTATGATGCTTGATGTAACCGAACGGTAAG
GCACACGGCCGTGTTGTTCCGTTGGGTTGCGCGCGTAGCAAGTCGCTGTGTGTGTTGTGT
GTGCGTTTGCGTGTGTGCGTGTGTGTGTGCTTTTGGCAGGAAAACGAAAGAAAATCCGGA
GCCCCCCTCCGCCACGGGTAGCCACAATCAATCGCCCGCACCGTCCTCAAGCCGCTCCTG
TTGCTCGTCCGGACCGCCACCTGCCCCATCCGCCTGCCAGCGGCCTTTCCTGACGCGTGG
ATATTGGACGCTTCGGCAGCAGACCAAGAGATAAGGGACACTCCAAGAAGGCACGCCGCA
CGATGGGACACACGGTGCAGGTGGCTGTCGCCACCCTCAACCAGTGGGCGATGGACTTTG
AGGGCAACGTCGAGCGCATCCTGCTATCGATCAGGCTGGCCGCCGCGAATGGCGCCACCT
ACCGTACGGGGCCGGAACTGGAGGTTAGCGGGTACAGCTGCGAGGACCACTTCCACGAGC
CGGACACGTACCTGCACTGCTGGGAGGCGCTGGTCGAGATCATACAGTCGCCCTGCTGCC
CGCCCGGCATGCTGAATCGACGTGGGCATGCCGGTGCAGCACCGGAACGTTGCGTACAAC
TGTCGCGTCGCGTTCCACA

consensusID : consensus_6158#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [TACATACTAGCAATAGATGAGGGAAAGCATTAGGGGGAGGCAAGGGGGTACTTTTTTCGCGACACAGCTTCTCCACTTCTCTCTCTTTCTCGCTCTCTTGGTGGTTGTGTTGGATGGTTTACATTACGTAAAACTTACCCACGCGTCAGGAAAGGCCGCTGGCAGGCGGATGGGGCAA]

[+] EMBL BX609054             [TACATACTAGCAATAGATGAGGGAAAGCATTAGGGGGAGGCAAGGGGGTACTTTTTTCGCGACACAGCTTCTCCACTTCTCTCTCTTTCTCGCTCTCTTGGTGGTTGTGTTGGATGGTTTACATTACGTAAAACTTACCCACGCGTCAGGAAAGGCCGCTGGCAGGCGGATGGGGCAA]




>consensus_6158#1
TACATACTAGCAATAGATGAGGGAAAGCATTAGGGGGAGGCAAGGGGGTACTTTTTTCGC
GACACAGCTTCTCCACTTCTCTCTCTTTCTCGCTCTCTTGGTGGTTGTGTTGGATGGTTT
ACATTACGTAAAACTTACCCACGCGTCAGGAAAGGCCGCTGGCAGGCGGATGGGGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6158#0      CCGGTTGCTGCCCGTACCGCCCGCCCGCAAATCGTTATCCGCTTTGGCTCGCTCTCGGCG 60
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      GCGAAGGGAGAAGCGCCAGCCAGCAATTACCCACCCCCCATCCGAAAACAATTGTAAAAA 120
consensus_6158#1      ----------------------------------TACATACTAGCAATAGATGAGGGAAA 26
                                                          *  *   * **   **     ***

consensus_6158#0      CCAGTTTTGTTTGTCCAGAAAGTGTAGTGTATTGTTTTTCGCCAGCCGTTTCTTCTCTTT 180
consensus_6158#1      GCATTAGGGGGAGGCAAGGGGGTAC------TTTTTTCGCGACA-CAGCTTCTCCACTTC 79
                       ** *   *   * * **   **        ** ***  ** ** * * **** * *** 

consensus_6158#0      TTTTTCATTCCCATTTTCTTGCCCCTCAATGTATGATGCTTGATGTAACCGAACGGTAAG 240
consensus_6158#1      TCTCTCTTTCTCGCTCTCTTGGTGGTTG-TGTTGGATGGTTTACATTACGTAAAACTTAC 138
                      * * ** *** *  * *****    *   ***  **** ** *  * **  **   * * 

consensus_6158#0      GCACACGGCCGTGTTGTTCCGTTGGGTTGCGCGCGTAGCAAGTCGCTGTGTGTGTTGTGT 300
consensus_6158#1      CCACGCG-TCAGGAAAGGCCGCTGGCAGGCGGATGGGGCAA------------------- 178
                       *** **  *  *     *** ***   ***   *  ****                   

consensus_6158#0      GTGCGTTTGCGTGTGTGCGTGTGTGTGTGCTTTTGGCAGGAAAACGAAAGAAAATCCGGA 360
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      GCCCCCCTCCGCCACGGGTAGCCACAATCAATCGCCCGCACCGTCCTCAAGCCGCTCCTG 420
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      TTGCTCGTCCGGACCGCCACCTGCCCCATCCGCCTGCCAGCGGCCTTTCCTGACGCGTGG 480
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      ATATTGGACGCTTCGGCAGCAGACCAAGAGATAAGGGACACTCCAAGAAGGCACGCCGCA 540
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      CGATGGGACACACGGTGCAGGTGGCTGTCGCCACCCTCAACCAGTGGGCGATGGACTTTG 600
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      AGGGCAACGTCGAGCGCATCCTGCTATCGATCAGGCTGGCCGCCGCGAATGGCGCCACCT 660
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      ACCGTACGGGGCCGGAACTGGAGGTTAGCGGGTACAGCTGCGAGGACCACTTCCACGAGC 720
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      CGGACACGTACCTGCACTGCTGGGAGGCGCTGGTCGAGATCATACAGTCGCCCTGCTGCC 780
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      CGCCCGGCATGCTGAATCGACGTGGGCATGCCGGTGCAGCACCGGAACGTTGCGTACAAC 840
consensus_6158#1      ------------------------------------------------------------
                                                                                  

consensus_6158#0      TGTCGCGTCGCGTTCCACA 859
consensus_6158#1      -------------------