cluster # 616

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Anopheles gambiae
cluster # 616 cluster # 616 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_616#0 length = 641 sequences # 1

consensus_616#1 length = 292 sequences # 1

consensusID : consensus_616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATTTTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTGTGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATATAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGTCAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCGGTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAATTTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC]

[+] EMBL BM620753             [CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATTTTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTGTGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATATAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGTCAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCGGTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAATTTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC]




>consensus_616#0
CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATT
TTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGA
TGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAAC
ACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAG
CGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACT
GATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTG
TGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATA
TAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGT
CAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCG
GTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAAT
TTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC

consensusID : consensus_616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGTCCTACATACACCCACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAACAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGTATCACAGCTGTGTGTACACAAGTGAGCTACGGGG]

[+] EMBL BM643907             [CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGATGTTTGCAAGATTTTCTTTTATTATTATTTATAGTCCTACATACACCCACAAACACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGCAACAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGTATCACAGCTGTGTGTACACAAGTGAGCTACGGGG]




>consensus_616#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGATGTTTGCAAGATTTTCTTTTATTA
TTATTTATAGTCCTACATACACCCACAAACACACTGAAGTGTCCAATCTGGGACGTGCAG
TAGTAACAAGCAATAGTGAAAAATAGAAAGCGAGCGAGAGCAGATGAGTGAGATTCGGGC
AACAAGAAGCAGCAAGAGGCATTACTAACTGATTCCTTACTAATAATATTGTAGTTTTTT
GCAAGCAAAAGCCCAAGTATCACAGCTGTGTGTACACAAGTGAGCTACGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_616#0      CCGCTAATTTACAAGATGCTAGAGAGTGTGTGACTATTTATAGTAAAAAATATTATTATT 60
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      TTTATTGCGAAATAAATCAATATATTTTATCCAGCAGCCCCTGTTTGCGTACGCTGGGGA 120
consensus_616#1      ------------------------CCGCGGACGCGTGGGCGGACGCGTGGGCGCTGGGGA 36
                                                    *    *  *      * *  *********

consensus_616#0      TGTTTGCAAGATTTTCTTTTATTATTATTTATAGCCCTAAATACACATACACACACAAAC 180
consensus_616#1      TGTTTGCAAGATTTTCTTTTATTATTATTTATAGTCCTA------CATACACCCACAAAC 90
                     ********************************** ****      ******* *******

consensus_616#0      ACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAG 240
consensus_616#1      ACACTGAAGTGTCCAATCTGGGACGTGCAGTAGTAACAAGCAATAGTGAAAAATAGAAAG 150
                     ************************************************************

consensus_616#0      CGAGCGAGAGCAGATGAGTGAGATTCGGGCAAGAAGAAGCAGCAAGAGGCATTACTAACT 300
consensus_616#1      CGAGCGAGAGCAGATGAGTGAGATTCGGGCAACAAGAAGCAGCAAGAGGCATTACTAACT 210
                     ******************************** ***************************

consensus_616#0      GATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGCATCACAGCTGTG 360
consensus_616#1      GATTCCTTACTAATAATATTGTAGTTTTTTGCAAGCAAAAGCCCAAGTATCACAGCTGTG 270
                     *********************************************** ************

consensus_616#0      TGTACACAAGTGAGCTGCGGGGGGGCAACCGTCCCCCGCACCATAACTTCCAGCACAATA 420
consensus_616#1      TGTACACAAGTGAGCTACGGGG-------------------------------------- 292
                     **************** *****                                      

consensus_616#0      TAAGTCACGAATTTAAAATGAGTGTGAACATGTTCAAAATAGCACTGGAAATGCATGGGT 480
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      CAGAAATATGCAGTGGAGAAAGTTTGCAACGAACCACACACCACCGTCGTATTTGGAGCG 540
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      GTTCATACAGAATAGAGAGAGTGAGAGAGAGAGAGAGTTTGGTTTGGGTTTTTGTACAAT 600
consensus_616#1      ------------------------------------------------------------
                                                                                 

consensus_616#0      TTTCTTCTAAAAATCCGTTTCCGTTCCATTTTTTCAGTTCC 641
consensus_616#1      -----------------------------------------