These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1074 fasta sequence [AATCGCCCCGAGGCTGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGTGGTATTGATTCAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAACAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTCTATGTATTGGGCTGCTAGAATTAGCGATATTTATATCCTTCGACCTGTCAAGGTAAATTGTGAAAGGAGCGTCATGTAGGTAACCAATAGTCGGTGTGTCGATCGCAAACAAATGCCACTATACTCTGTACCGAGAGTCCAAAAAACCCCTTAATCATTGTCGCCGTGCCTTCTGGCATGATACAATTAAAAGATTATAAAATCTTTTGTTACCAGTGCGCCTGACGGAGGAAACTCGATACAGGTTAACCTGGATTCCATGAAAATCCGTCAAGAGCGGTTTATATTAATATTTTCAATTATATATCCTCGGCATACGAAACAAATTTTAAGAGAGACGGAATTATATCGGGTAATACAATTTTTCGCTTAGAGCATGTGAGTGCGATAGTTAAAAAGTTTCTTTTCTATTTTTTCCTCGCATAATGGTCCTGAAAATTTTAATTTTTTAATAGAAACAATGCCTAATTATTGAAAATTACTTTCAATTTTGTTTTACGTTTTCCACATATTTTTTCAGTAATCATTGCAAAGCGTACTAAAGAGCAGCTATTAAGTTTTTCAAAATAAAAGTGTATTCACAGAAGATAGCTTATTCAGACAGGCTTTCTACTTATATTATGTAACGCGTTATGTAAAGTAACAAATGAGATGTTTCCCCCAATTTAATTAT] [+] EMBL AL933763 [AATCGCCCCGAGGCTGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGTGGTATTGATTCAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAACAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTCTATGTATTGGGCTGCTAGAATTAGCGATATTTATATCCTTCGACCTGTCAAGGTAAATTGTGAAAGGAGCGTCATGTAGG ] [+] EMBL BX620274 [ AGAGCAAACGGAGGAATCACACTTCTATGTATTGGGCTGCTAGAATTAGCGATATTTATATCCTTCGACCTGTCAAGGTAAATCGTGAAAGGAGCGTTATGTAGGTAACCAATAGTCGGTGTGTCGATCGCAAACAAATGCCACTATACTCTGTACCGAGAGTCCAAAAAACCCCTTAATCATTGTCGCCGTGCCTTCTGGCATGATACAATTAAAAGATTATAAAATCTTTTGTTACCAGTGCGCCTGACGGAGGAAACTCGATACAGGTTAACCTGGATTCCATGAAAATCCGTCAAGAGCGGTTTATATTAATATTTTCAATTATATATCCTCGGCATACGAAACAAATTTTAAGAGAGACGGAATTATATCGGGTAATACAATTTTTCGCTTAGAGCATGTGAGTGCGATAGTTAAAAAGTTTCTTTTCTATTTTTTCCTCGCATAATGGTCCTGAAAATTTTAATTTTTTAATAGAAACAATGCCTAATTATTGAAAATTACTTTCAATTTTGTTTTACGTTTTCCACATATTTTTTCAGTAATCATTGCAAAGCGTACTAAAGAGCAGCTATTAAGTTTTTCAAAATAAAAGTGTATTCACAGAAGATAGCTTATTCAGACAGGCTTTCTACTTATATTATGTAACGCGTTATGTAAAGTAACAAATGAGATGTTTCCCCCAATTTAATTAT] consensusID : consensus_6162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 768 fasta sequence [CCGGATTGACGGTGGAGTAATGGAACGTCCAGAAAACTGCCCGGATAAGCTTTATGAACTAATGCGAATCTGTTGGCAACACCGAGCTTCGGCGAGACCTTCATTTATAGATATCATTCGTATGTTGTTACCCGATGCTAACGATAATTTTAAAAGAGTGTCTTTCTTTTTCTCGCCGGATGCTATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGTATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTACATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGT] [+] EMBL BM588253 [CCGGATTGACGGTGGAGTAATGGAACGTCCAGAAAACTGCCCGGATAAGCTTTATGAACTAATGCGAATCTGTTGGCAACACCGAGCTTCGGCGAGACCTTCATTTATAGATATCATTCGTATGTTGTTACCCGATGCTAACGATAATTTTAAAAGAGTGTCTTTCTTTTTCTCGCCGGATGCTATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCT ] [+] EMBL BX627988 [ GATGCTAACGATAATTTTAAAAGAGTGTCTTTCTTTTTCTCGCCGGATGCTATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTTAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATGACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGTGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACCATCTATTAGACTGTAGCACAAACGCATCTAAATCGATGTATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTACATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGT] consensusID : consensus_6162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCGGACGCGTGGGGGAAATGAATTGTTAGATGATTTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATATATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTC] [+] EMBL BM651178 [CCGCGGACGCGTGGGGGAAATGAATTGTTAGATGATTTTACCGAACCGTTGCGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACGGACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACATTCGTTCACCCCATTCACCTCAGAGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTAGCCATGTTAAAAACAAACAAAACATATCGGCCAGCACCAGTCAGGAAAGCCGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCGGTATTGATTAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATCTATTAGACTGTAGCACAAACGCATCTAAATATATGCATCGTATCCAACAATTGAGCTCTTGACAAAGGGTCTAAGAACATTGTAACAGGTTATATTATAGTTACAGATTACATTGCATTCTCGTGATCGATCTTGTATTCCTTCCCCACCAATCCGTATGAACACCTCAAACTAGTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6162#1 ------------------------------------------------------------ consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 AATCGCCCCGAGGCTGAAAATGAAGGAAATAACGAAATGCGATAACGATGCAAGTTATGG 60 consensus_6162#1 ----------------------------------------------CCGGATTGACGGTG 14 consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 AAGGAGATCGGTGGTATTGATTCAAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATT 120 consensus_6162#1 GAGTAATGGAACGTCCAGAAAACTGCCCGGATAAGCTTTATGAACTAATGCGAATCTGTT 74 consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 ACGCAATGGTGCCAACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACAATC 180 consensus_6162#1 GGCAACACCGAGCTTCGGCGAGACCTTCATTTATAGATATCATTCG-----TATGTTGTT 129 consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 TATTAGACTGTAGCACAAACGCATCTAAATCGATGCATCGTATCCAACAATTGAGCTCTT 240 consensus_6162#1 ACCCGATG--CTAACGATAATTTTAAAAGAGTGTCTTTCTTTT-----TCTCGCCGGATG 182 consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 GACAAAGGGTCTAACAACA-TTGTAACAGGTTATATTATAGTTACAGATTACATTGCATT 299 consensus_6162#1 CT-ATGGATAATTCTATCCAGCCTGGAAATGAATTGTTAGATGATGTTACCGAACCGTTG 241 consensus_6162#2 CC-GCGGACGCGTGGG--------GGAAATGAATTGTTAGATGATTTTACCGAACCGTTG 51 consensus_6162#0 CTCGTGATCGATCTTGTATTCCTTCCCCACCAATC-CCGTATGAACACCTCAAACTAGTA 358 * * * *** **** * *** * consensus_6162#1 CGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACG 301 consensus_6162#2 CGTGCTAATGACGACGGTTTCGAAGAAGATGAGGATGATGCATATTCTATCGAATTGACG 111 consensus_6162#0 CGAATT--TTAGTATAGCTAAGAGCAAACGGAGGA-ATCACAC-TTCTATGTATTGGGCT 414 ** * * * * * * ** ** ***** ** ****** * * * * consensus_6162#1 GACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACAT--TCGTTCACCCCATTCAC 359 consensus_6162#2 GACAGCCGATTAATGCACAATAATGGTCCTAAACCAGACAT--TCGTTCACCCCATTCAC 169 consensus_6162#0 GCTAG--AATTAGCG-ATATTTATATCCTTCGACCTGTCAAGGTAAATTGTGAAAGGAGC 471 * ** **** * * * * ** * * *** * ** * * * * consensus_6162#1 CTCAG--AGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTA 417 consensus_6162#2 CTCAG--AGGTGAGCAAACGCTCCAGGGTGCTCAGCATTCATATGGTTTACGAATATTTA 227 consensus_6162#0 GTCATGTAGGTAACCAATAGTCGGTGTGTCGATCGCAAACAAATGCCACTATACTCTGTA 531 *** **** * *** * * ** *** ** *** * * * ** consensus_6162#1 GCCATGTTAAAAACAAACAAAACATATCGGCCAGCAC-CAGTCAGGAAAGCCGAAAATGA 476 consensus_6162#2 GCCATGTTAAAAACAAACAAAACATATCGGCCAGCAC-CAGTCAGGAAAGCCGAAAATGA 286 consensus_6162#0 CCGAGAGTCCAAAAAACCCCTTAATCATTGTCGCCGTGCCTTCTGGCATGATACAATTAA 591 * * * *** ** * ** * * * * ** ** * * ** * * consensus_6162#1 AGGAA-ATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCG-------GT 528 consensus_6162#2 AGGAA-ATAACGAAATGCGATAACGATGCAAGTTATGGAAGGAGATCGGCG-------GT 338 consensus_6162#0 AAGATTATAAAATCTTTTGTTACCAGTGCGCCTGACGGAGGAAACTCGATACAGGTTAAC 651 * ** **** * * ** * *** * * *** * * *** consensus_6162#1 ATTGATT-------AAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGG 581 consensus_6162#2 ATTGATT-------AAGCAAGTGGAAACACTTTTCTTTTTAACCAAACATTACGCAATGG 391 consensus_6162#0 CTGGATTCCATGAAAATCCGTCAAGAGCGGTTTATATTAATATTTTCAATTATATATCCT 711 * **** ** * * * *** ** * **** * consensus_6162#1 TGCCA-ACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACA-ATCTATTAGA 639 consensus_6162#2 TGCCA-ACAAGCATCTCTTCGCGAGAGTCGCATGCAACATCGCTTAACA-ATCTATTAGA 449 consensus_6162#0 CGGCATACGAAACAAATTTTAAGAGAGACGGA-ATTATATCGGGTAATACAATTTTTCGC 770 * ** ** * ** ***** ** * * **** *** * * * ** * consensus_6162#1 CTGTAGCACAAACGCATCTAAATCGATGTATCGTATCCAACAATTGAGCTCTTGACAAAG 699 consensus_6162#2 CTGTAGCACAAACGCATCTAAATATATGCATCGTATCCAACAATTGAGCTCTTGACAAAG 509 consensus_6162#0 TTAGAGCATGTGAGTGCGATAGTTAAAAAGTT-TCTTTTCTATTTTTTCCTCGCATAATG 829 * **** * * * * * * * * ** * * ** * consensus_6162#1 GGTCTAAGAACATTG------TAACAGGT----TACATTATAGTTACAGATTACATTGCA 749 consensus_6162#2 GGTCTAAGAACATTG------TAACAGGT----TATATTATAGTTACAGATTACATTGCA 559 consensus_6162#0 GTCCTGAAAATTTTAATTTTTTAATAGAAACAATGCCTAATTATTGAAAATTACTTTCAA 889 * ** * ** ** *** ** * * ** ** * ***** ** * consensus_6162#1 TTCTCGTGATCGATCTT---GT-------------------------------------- 768 consensus_6162#2 TTCTCGTGATCGATCTT---GTATTCCTTCCCCACCAATCCGTATGAACACCTCAAACTA 616 consensus_6162#0 TTTTGTTTTACGTTTTCCACATATTTTTTCAGTAATCATTGCAAAGCGTACTAAAGAGCA 949 ** * * ** * * * consensus_6162#1 ------------------------------------------------------------ consensus_6162#2 GTACGAATTTTAGTATAGCTAAGAGCAAACGGAGGAATCACACTTC-------------- 662 consensus_6162#0 GCTATTAAGTTTTTCAAAATAAAAGTGTATTCACAGAAGATAGCTTATTCAGACAGGCTT 1009 consensus_6162#1 ------------------------------------------------------------ consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 TCTACTTATATTATGTAACGCGTTATGTAAAGTAACAAATGAGATGTTTCCCCCAATTTA 1069 consensus_6162#1 ----- consensus_6162#2 ----- consensus_6162#0 ATTAT 1074 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||