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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1590 fasta sequence
[CCGCAGACGCACGTGTCCGGAAAGTCATGAGCCTGCCGGTATATTCTTAAGCTTTCTCTGTTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGTTTTGCGCCTACCGAGCTGATCTTTCGCAGCAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAGATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGGAAAAAAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATGCAAAGACTTTACCTGAGGGGCTACGCATGGGAGTGGCAGTGACGGAACGTACGATTGGTGATGGTTAACGATAGAAACGATGCAAACGGAAGAGAAATAGGCCGGCAAGAATGGCGGTACCGGTGGTAGTGGAAATGGACGTAGTGGTAGCACGTAGGACGTGTGGGGATAAACGGCACCAGCAAAAGCAAAAAGCAAAAAGCTGTTACCATTCAAATAGTGGTGGCGAATGGTGTAGAAATGAGAGGGCGGGAGGATGGAATCAAAAGTAAGGAAAAGGAAAAGATGAAAAAAAAAACACAAACACACACATACATACACACATACACGAGAGCAAACAATTAGTAGTCTGATTCAATTGTAGTGATAGTAACATTTAGTAAGTGACACATGGCGATAAATATGTAATTTGATAAGGTTGATGAATGGTGAAGCAGAACGGAAAAGAGAGATAGAAAGAGAGAGCAAGAAAGCAAACAAAACAAAACAAAGCTACCAAGAGCAGATAAGCTAAAAAGCAGAAAAGAAACAAACAAACAAAAACAAACTAACTAACAAACAAACATAAGTATGGAAAATGATTAATGAAAGGCAAGCTTAAAAAGAAAAAGCGTATTCAGCAGGGTGAAAAAGGAAAGGAACAAGGAAATGGTTTTTTGAGGTGAAAATGTGAATGTGAAAAACAAATGACCGAAATCGATGCTGAGCTGTGGCCGCGTGTTGCTGGAGCGTGTTTAAATGCGGGGAAACAAAACCCCGATGATATGGTATGCCGGAAAGCTCAGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAATCCCTCCGGAAAAAATACGTAGTTGCCCGTTTTGTTGTTGAAAAAAGCTAAAAATTAACGTGACGTTGTAAAGGAAATGCAAATCCCAGGATCGACAAGTGATTCAAAATTAACGGCTATTGGAAAAACACGTGAATTCACAAAATTTAACTATTGACCTGATCTGAGCCGTGTAGTTGTCGTTGTTGTTATCAGTACATACAGTACACATACATTCAGTCAGTAGAACCATGCTACTATATCCAAAGCATCAAGTTACCAAATGATTGCGTTACACGTTTCTATAGTGAAGATGTTTTTTTTCGTTTTGTCTTCTTTCGGTCTCACATGCTACTCATTAAATTATTCTCACCCTTTCTTTGCGTCTCACCAAATCTCTCTCTCGCCCGCTGAGCACCAGTGAGCAGAGCGTGAGCAAAGCGGGCAGGGGTTGTTCTGTTTGCGACTGGTTGCTG]
[+] EMBL BM636533 [CCGCAGACGCACGTGTCCGGAAAGTCATGAGCCTGCCGGTATATTCTTAAGCTTTCTCTGTTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGTTTTGCGCCTACCGAGCTGATCTTTCGCAGCAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAGATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGGAAAAAAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATGCAAAGACTTTACCTGAGGGGCTACGCATGGGAGTGGCAGTGACGGAACGTACGATTGGTGATGGTTAACGATAGAAACGATGCAAACGGAAGAGAAATAGGCCGGCAAGAATGGCGGTACCGGTGGTAGTGGAAATGGACGTAGTGGTAGCACGTAGGACGTGTGGGGATAAACGGCACCAGCAAAAGCAAAAAGCAAAAAGCTGTTACCATTCAAATAGTGGTGGCGAATGGTGTAGAAATGAGAGGGCGGGAGGATGGAA ]
[+] EMBL BM656137 [ ccgcaAAAAAGC AAAAGCTGTTACCATTCAAATAGTGGTGGCGTATGGCGTAGAAATGAGAGGGCGGGAGGATGGAATCAAAAGTAAGGAAAAGGAAAAGATGAAAAAAAAAACACAAACACACACATACATACACACATACACGAGAGCAAACAATTAGTAGTCTGATTCAATTGTAGTGATAGTAACATTTAGTAAGTGACACATGGCGATAAATATGTAATTTGATAAGGTTGATGAATGGTGAAGCAGAACGGAAAAGAGAGATAGAAAGAGAGAGCAAGAAAGCAAACAAAACAAAACAAAGCTACCAAGAGCAGATAAGCTAAAAAGCAGAAAAGAAACAAACAAACAAAAACAAACTAACTAACAAACAAACATAAGTATGGAAAATGATTAATGAAAGGCAAGCTTAAAAAGAAAAAGCGTATTCAGCAGGGTGAAAAAGGAAAGGAACAAGGAAATGGTTTTTTGAGGTGAAAATGTGAATGTGAAAAACAAATGACCGAAATCGATGCTGAGCTGTGGCCGCGTGTTGCTGGAGCGTGTTTAAATGCGGGGAAACAAAACCCCGATGATATGGTATGCCGGAAAGCTCAGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAATCCCTCCGGAAA ]
[+] EMBL BM639760 [ CCG AATCGATGCTGAGCTGTGGCCGCGTGTTGCTGGAGCGTGTTTAAATGCGGGGAAACAAAAACCCGATGATATGGTAGGCCGGAAAGCTCAGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAATCCCTCCGGAAAAAATACGTAGTTGCCCGTTTTGTTGTTGAAAAAAGCTAAAAATTAACGTGACGTTGTAAAGGAAATGCAAATCCCAGGATCGACAAGTGATTCAAAATTAACGGCTATTGGAAAAACACGTGAATTCACAAAATTTAACTATTGACCTGATCTGAGCCGTGTAGTTGTCGTTGTTGTTATCAGTACATACAGTACACATACATTCAGTCAGTAGAACCATGCTACTATATCCAAAGCATCAAGTTACCAAATGATTGCGTTACACGTTTCTATAGTGAAGATGTTTTTTTTCGTTTTGTCTTCTTTCGGTCTCACATGCTACTCATTAAATTATTCTCACCCTTTCTTTGCGTCTCACCAAATCTCTCTCTCGCCCGCTGAGCACCAGTGAGCAGAGCGTGAGCAAAGCGGGCAGGGGTTGTTCTGTTTGCGACTGGTTGCTG]
consensusID : consensus_6166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence
[GTGAAATAGAGGAGGATATTATCTTTACATGTTGAAATAATGACAAATTAGCATGCATATTCAATTAGGTGCGCGGGACAAGACAACCCCCCAATTCTACGGCCTTATGCCGGCCTTTGTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAATATTAACAAAAAACCCCAACACACATACACATAAAAGAAAAACCCCCTCCCCTCGTAGCCTAAAGCAAGATGCAGTAGCACGCAGTTTAATGCAAACTACGA----AGAGAGAGAGAGAGATGCTGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTTTTATCAG-AAAAAAAGATATGAAAGCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTTTCTCTGTTGCCTGTCTGCAACAGGTGCTGCGCGATGATTAGGCTATGTTTTCTCATAGCTTTGCGCCTACCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAG-ATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGCAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATTCAAAGGCTACGCATGGGAGCGCGAAGACGGAACGAACGATTGGTGATGGTTAACGATAGAAACGATGCAACGAAAGAGCGGTTCTGGNGGTAGTGGAAAT]
[+] EMBL BX620176 [GTGAAATAGAGGAGGATATTATCTTTACATGTTGAAATAATGACAAATTAGCATGCATATTCAATTAGGTGCGCGGGACAAGACAACCCCCCAATTCTACGGCCTTATGCCGGCCTTTGTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAATATTAACAAAAAACCCCAACACACATACACATAAAAGAAAAACCCCCTCCCCTCGTAGCCTAAAGCAAGATGCAGTAGCACGCAGTTTAATGCAAACTACGA AGAGAGAGAGAGAGATGCTGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTTTTATCAG AAAAAAAGATATGAAAGCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTTTCTCTGTTGCCTGTCTGCAACAGGTGCTGCGCGATGATTAGGCTATGTTTTCTCATAGCTTTGCGCCTACCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAG ATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGCAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATTCAAAGGCTACGCATGGGAGCGCGAAGACGGAACGAACGATTGGTGATGGTTAACGATAGAAACGATGCAACGAAAGAGCGGTTCTGGNGGTAGTGGAAAT]
[+] EMBL AL933555 [ GGAGGCTATTATCTTTACACGTTGAAATAATGACAAATTA CATGCATATTCAATTA GTGCGCGGGACAAGACAACCCCCCAATTCTACGGCCTTATGCCGGCCTTTGTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAATATTAACAAAAAACCCCAACACACATACACATAAAAGAAAACCCCACTCCCCTCGTAGCCTAAAGCAAGATGCAGTAGCACGCAGTTTAATGCAAACTACGAAGAGAGAGAGAGAGAGAGATGCTGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTTTTATCAGAAAAAAAAGATATGAAAGCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTTTCTCTGTTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGCTTTGCGCCTATCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTCGTTAGTACGGTAACCGAATGAGCATTGATGCCA TTTGGTACACCCTGCACCCCGTACACTGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6166#0 CCGCAGACGCACGTGTCCGGAAAGTCATGAGCCTGCCGGTATATTCTTAAGCTTTCTCTG 60
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 TTGCCTGTCTGCCGCAGGTGCTGCGCGATGATTAGGCTGTGTTTTCTCATAGTTTTGCGC 120
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 CTACCGAGCTGATCTTTCGCAGCAACATCAAACACAGACACTCGTTAGTACGGTAACCGA 180
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 ATGAGATTGATGCCATTTTGGTACACCCTGCACCCCGTAGACTGTTGTTAGCTCTTGGTG 240
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 TTTCGCTTGGGAAAAAAAAACAGGACGACGGCACTCTCGCGAAGAATTCAATGCAAAGAC 300
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 TTTACCTGAGGGGCTACGCATGGGAGTGGCAGTGACGGAACGTACGATTGGTGATGGTTA 360
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 ACGATAGAAACGATGCAAACGGAAGAGAAATAGGCCGGCAAGAATGGCGGTACCGGTGGT 420
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 AGTGGAAATGGACGTAGTGGTAGCACGTAGGACGTGTGGGGATAAACGGCACCAGCAAAA 480
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 GCAAAAAGCAAAAAGCTGTTACCATTCAAATAGTGGTGGCGAATGGTGTAGAAATGAGAG 540
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 GGCGGGAGGATGGAATCAAAAGTAAGGAAAAGGAAAAGATGAAAAAAAAAACACAAACAC 600
consensus_6166#1 ---------GTGAAAT-AGAGGAGGATATTATCTTTACATGTTGAAATAATGACAAATTA 50
** *** * * * * * * *** *** ** *****
consensus_6166#0 ACACATACATACA--CACATACACGAGAGCAAACAATTAGTAGTCTGATTCAATTGTAGT 658
consensus_6166#1 GCATGCATATTCAATTAGGTGCGCGGGACAAGACAACCC----CCCAATTCTACGGCC-T 105
** * ** ** * * * ** ** * **** * **** * * *
consensus_6166#0 GATAGTAACATTTAGTAAGTGACACATGGCGATA-AATATGTAATTTGATAAGGTTGATG 717
consensus_6166#1 TATGCCGGCCTTT-GTACATACGTTCGAACGTTACGAAACAAAACAAAACAAAAAT-ATT 163
** * *** *** * ** ** * * ** * ** * **
consensus_6166#0 AATGGTGAAGCAGAACGGAAAAGAGAGATAGAAAGAGAGAGCAAGAAAGCAAACAAAACA 777
consensus_6166#1 AACAAAAAACCCCAACACACAT-ACACATA-AAAGAAAAACCCCCTCCCCTCGTAGCCTA 221
** ** * *** * * * * *** ***** * * * * * *
consensus_6166#0 AAACAAAGCTACCAAGAGCAGATAAGCTAAAAAGCAGAAAAGAAACAAACAAACAAAAAC 837
consensus_6166#1 AAGCAAGAT--GCAGTAGCACGCAGTTTAATGCAAACTACGAAGAGAGAGAGAGAGATGC 279
** *** ** **** * *** * * * * * * * * * * *
consensus_6166#0 AAACTAACTAACAAACAAACATAAGTATGGAAAATGATTAATGAAAGGCAAGCTTAAAAA 897
consensus_6166#1 TGTTTGTTTAGTAGAATTCATCGAGTACGCGAGTT--TTATCAGAAAAAAAGATATGAAA 337
* ** * * **** * * * *** ** *** * ***
consensus_6166#0 GAAAAAGCGTATTCAGCAGGGTGAAAAAGGAAAGGAACAAGGAAATGGTTTTTTGAGGTG 957
consensus_6166#1 GCGAAACTTCACACACACGTGTCCGGAAAGTCATGAGTCTGCCGGTATGCCCCTTAGCTT 397
* *** * ** * ** ** * * ** * * * ** *
consensus_6166#0 AAAATGT-GAATGTGAAAAACAAATGACCGAAATCGATGCTGAGCTGTGGCCGCGTGTTG 1016
consensus_6166#1 TCTCTGTTGCCTGTCTGCAACAGGTG-CTGCG--CGATGATTAG-----GCTATGTTTTC 449
*** * *** **** ** * * ***** * ** ** ** **
consensus_6166#0 CTGGAGCGTGTTTAAATGCGGGGAAACAAAACCCCGATGATATGGTATGCCGGAAAGCTC 1076
consensus_6166#1 TCATAGC---TTTGCGCCTACCGAGCTGATCTTTCGCAGGAACATCAAACACAGACACTC 506
*** *** ** * ** * * * * * ***
consensus_6166#0 AGTAACGCGTCAAGCACAGCAAGTGCTGTAGTTTAAACTTTTGCGCACACCTGAGTTAAT 1136
consensus_6166#1 GTTAGTACGGTAACCG-----AATGAGATTGATGCCATTTTGGTACAC-CCTG------- 553
** ** ** * * ** * * * * *** * *** ****
consensus_6166#0 CCCTCCGGAAAAAATACGTAGTTGCCCGTTTTGTTGTTGAAAAAAGCTAAAAATTAACGT 1196
consensus_6166#1 CACCCCGTAGACTGTTGTTAGCTCTTGGTGTTTCGCTTGGCAAAACAGGACGACGGCACT 613
* * *** * * * *** * ** ** *** **** * * *
consensus_6166#0 GACGTTGTAAAGGAAATGCAAATCCCAGG-ATCGACAAGTGATT-CAAAATTAACGGCTA 1254
consensus_6166#1 CTCGCGAAGAATTCAATTCAAAGGCTACGCATGGGAGCGCGAAGACGGAACGAACGATTG 673
** ** *** **** * * * ** * * ** * ** **** *
consensus_6166#0 TTGGAAAAACACGTGAATTCACAAAATTTAACTATTGACCTGATCTGAGCCGTGTAGTTG 1314
consensus_6166#1 GTGATGGTTAACG---ATAGAAACGATGCAACGAAAGAGCGGTTCTGGNGGTAGTGGAAA 730
** *** ** * * ** *** * ** * * **** ** *
consensus_6166#0 TCGTTGTTGTTATCAGTACATACAGTACACATACATTCAGTCAGTAGAACCATGCTACTA 1374
consensus_6166#1 T----------------------------------------------------------- 731
*
consensus_6166#0 TATCCAAAGCATCAAGTTACCAAATGATTGCGTTACACGTTTCTATAGTGAAGATGTTTT 1434
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 TTTTCGTTTTGTCTTCTTTCGGTCTCACATGCTACTCATTAAATTATTCTCACCCTTTCT 1494
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 TTGCGTCTCACCAAATCTCTCTCTCGCCCGCTGAGCACCAGTGAGCAGAGCGTGAGCAAA 1554
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 GCGGGCAGGGGTTGTTCTGTTTGCGACTGGTTGCTG 1590
consensus_6166#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||