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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 916 fasta sequence
[CCGAACAAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGCCGGGCCAGGCACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCGCATCGCTCGTTGCAGCGGAAGCGACCGTGTTCCGTCGCCGCCGTGTGTGTGTGTGTGTGTTTGTGTTCTTTAGCGCTTTAGCAGCGTGTTGTGTTTCCTCATGCCAGTGCGGCGCATCCAGTAGCGGCGCAAAATCCACAGTTCCAAAAGGGGAATAGGGGGTGAAGCAAGCGAAGGAGCGGGTAGTATGGCGACCGGGGCCCGCGGCGACCGGAAGATGCGGGTGGTGGCGCTGGTCAGCGGCGGCAAGGACAGCACGTACAACATGATGCAGGTGGTGGCGGAGGGCCACGAGCTGGTCGCGCTGGCCAACCTCCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTACCAGACGGTGGGCCACCAGGGG-ATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTACCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGACGACGAGGTGGAGGATCTGTACGAGCTGCTGGCGGAGGTGCAGCGGGAGCAGCGCGTCGAGGCGGTGGCCGTCGGTGCCATCCTGTCCGACTATCAGCGCGTACGGGTGGAGAATGTCTGCACCCGGCTGAACCTTATCTCGCTCGCGTACCTGTGGCGCCGGGACCAGACCGAGCTGCTGCAGGAGATGATCGACTGTCAGGTGCACGCGATCATCATCAAGGTGGCGGCGCTCGGGCTCATGCCGGACCGGCACCTGGGCAAATCGCTCAAGGAGCTGCAGCCGCACCTGCTGCTGATGCGCGAC]
[+] EMBL BM607480 [CCGAACAAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGCCGGGCCAGGCACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCGCATCGCTCGTTGCAGCGGAAGCGACCGTGTTCCGTCGCCGCCGTGTGTGTGTGTGTGTGTTTGTGTTCTTTAGCGCTTTAGCAGCGTGTTGTGTTTCCTCATGCCAGTGCGGCGCATCCAGTAGCGGCGCAAAATCCACAGTTCCAAAAGGGGAATAGGGGGTGAAGCAAGCGAAGGAGCGGGTAGTATGGCGACCGGGGCCCGCGGCGACCGGAAGATGCGGGTGGTGGCGCTGGTCAGCGGCGGCAAGGACAGCACGTACAACATGATGCAGGTGGTGGCGGAGGGCCACGAGCTGGTCGCGCTGGCCAACCTCCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTACCAGACGGTGGGCCACCAGGGG ATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTACCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGACGACGAG ]
[+] EMBL BM614050 [ ccGGCCACGAGCTGGTCGCGCTGGCCAACCTGCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTACCAGACGGTGGGCCACCAGGGGTATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTACCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGACGACGAGGTGGAGGATCTGTACGAGCTGCTGGCGGAGGTGCAGCGGGAGCAGCGCGTCGAGGCGGTGGCCGTCGGTGCCATCCTGTCCGACTATCAGCGCGTACGGGTGGAGAATGTCTGCACCCGGCTGAACCTTATCTCGCTCGCGTACCTGTGGCGCCGGGACCAGACCGAGCTGCTGCAGGAGATGATCGACTGTCAGGTGCACGCGATCATCATCAAGGTGGCGGCGCTCGGGCTCATGCCGGACCGGCACCTGGGCAAATCGCTCAAGGAGCTGCAGCCGCACCTGCTGCTGATGCGCGAC]
consensusID : consensus_6168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[AAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGGCGGGCCAGGTACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCACATCGCACGTTGCAGCGGAAGCGACCGTGTGCCGTCGCAACCGTCGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTCTCGTCCCGCTACCGTGGCCTAAACCTCAGCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGTGCGAGCGAGACGGCCAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGGACCGCGAGGGCGTAAAATAGCAGCTCTTGCGTCGGACCGCGCTCTGACCGCGACACGCCCGGGGAGCAAAACTGGGCGGAAGGGGTGAGCCCAGAAAGTGGTCGCCGTCACAGTAGCTGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCACCAACAATCACGTTCCGCGCACGT]
[+] EMBL BX617686 [AAAACACAAGCCCGTCACAAACAGCTGTTGGCTGTAGAGTGTGGTGTGGGAACGTCGGCGGGCCAGGTACACTTGACCGCGTTAATACACCCCGCCGTTACCGTGACGACAGCGAGCGCCGTACCATCACATCGCACGTTGCAGCGGAAGCGACCGTGTGCCGTCGCAACCGTCGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTCTCGTCCCGCTACCGTGGCCTAAACCTCAGCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGTGCGAGCGAGACGGCCAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGGACCGCGAGGGCGTAAAATAGCAGCTCTTGCGTCGGACCGCGCTCTGACCGCGACACGCCCGGGGAGCAAAACTGGGCGGAAGGGGTGAGCCCAGAAAGTGGTCGCCGTCACAGTAGCTGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCACCAACAATCACGTTCCGCGCACGT]
consensusID : consensus_6168#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[ATGATAGCGCGAAGCCGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTCCTACGCACGTCCCGTTCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACTCACCGCCCCTACCCTCATCTTCAACCTAAAGAAAAGCAACAACAACAAAACAAAAAGAAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTATCGCCCCGCTACCGTGGCCTAAACCTCATCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGCGCGAGCGAGACGGCGAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGG]
[+] EMBL BX625178 [ATGATAGCGCGAAGCCGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTCCTACGCACGTCCCGTTCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACTCACCGCCCCTACCCTCATCTTCAACCTAAAGAAAAGCAACAACAACAAAACAAAAAGAAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTATCGCCCCGCTACCGTGGCCTAAACCTCATCGCAAAACACCGACCGACCGCGGTCGTGCCAGTTGTGCGGGCTGTGTAGTGGACGGGCACGACGACTGTCTCTGTGCGGTACCGATATTTTTGCAACAAAATCCGTGCGCGAGCGAGACGGCGAGCGAGATCTCGAGTAGTGTGGGATGCTGTGGTGCGCGGATCGCCGCACGGAAGAAGAAAGGGATACGATCGCGCTCTAGACGCTGACAAAAGAGTTTGCCCACGCACAACGG]
consensusID : consensus_6168#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[ATGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTTCTACGCACGTTCCGTCCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACCCACCGCCCCTCCCCTCATCTTCAACCTGAAGAAAAGCAACAACAACAAAACAAAAAGAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGTGTGTGACAAAAGCGCCACCGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCAACCAACAATCACGTTCCGCGCACGTTCCACCCTTCATCGCTCATCCCCAGCCCATCGACGGCCGTGCGCTCGTCTCTTCGTCGCGAGCGAACCAGAAAGGGAGAACGTGTGAAGGTCGTCGGTGCCGTCGGTCAGCGTATTAGAGGGCCCCCGAC]
[+] EMBL BX622790 [ATGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTGATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTTCTACGCACGTTCCGTCCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACCCACCGCCCCTCCCCTCATCTTCAACCTGAAGAAAAGCAACAACAACAAAACAAAAAGAAACGTGCTCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAACTCAGCCATGCGGTTAGAACACTGACCGCGACAGTGTATGTGTGTGTGTTTGTGTGCGCGAGTGTGCGTGTGTGTGTGTGTGTGTGACAAAAGCGCCACCGCCGCCGCCGCTGTGTGGTTAGTGATAGTGTGTGCGAGAATCAACCAACAATCACGTTCCGCGCACGTTCCACCCTTCATCGCTCATCCCCAGCCCATCGACGGCCGTGCGCTCGTCTCTTCGTCGCGAGCGAACCAGAAAGGGAGAACGTGTGAAGGTCGTCGGTGCCGTCGGTCAGCGTATTAGAGGGCCCCCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6168#2 ATGATAGCGCGAAGCCGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTG 60
consensus_6168#3 --------------ATGATGATGATGATGATGGTGCTGGGGCGATGATGGCTGTGATTTG 46
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 ------------------------------------------------------------
consensus_6168#2 ATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTC 120
consensus_6168#3 ATTGATAGTTCAGTGTTGTTCCTATCGTGTTCCTCCTCCTCCCCCCTCTGGCCAATACTT 106
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 ------------------------------------------------------------
consensus_6168#2 CTACGCACGTCCCGTTCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACTCACCGC 180
consensus_6168#3 CTACGCACGTTCCGTCCAGCTCTCGAAACACTGTGCAAGCAACTCCGTCTAACCCACCGC 166
consensus_6168#1 ---------------------------------AAAACACAAGCCCGTC--ACAAACAGC 25
consensus_6168#0 ---------------------------CCGAACAAAACACAAGCCCGTC--ACAAACAGC 31
* *** ***** ** ** **
consensus_6168#2 CCCTACCCTCATCTTCAACCTAAAGAAAAGCAACAACAACAAAACAAAAAGAAAACGTGC 240
consensus_6168#3 CCCTCCCCTCATCTTCAACCTGAAGAAAAGCAACAACAACAAAACAAAAAGAAA-CGTGC 225
consensus_6168#1 TGTT------GGCTGTAGAGTGTGGTGTGGGAACGTCGGCGGGCCAGGTACA---CTTGA 76
consensus_6168#0 TGTT------GGCTGTAGAGTGTGGTGTGGGAACGTCGCCGGGCCAGGCACA---CTTGA 82
* ** * * * * *** * * ** * * * **
consensus_6168#2 TCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAAC 300
consensus_6168#3 TCCCTCCGAAGTTGGCAAGAGACGTAAAAAAGTCCTTGATTGAAGGAAAAATTCCGAAAC 285
consensus_6168#1 CCGCGTTAATACACCCCGCCGTTACCGTGACGAC----AGCGAGCGCCGTACCATCACAT 132
consensus_6168#0 CCGCGTTAATACACCCCGCCGTTACCGTGACGAC----AGCGAGCGCCGTACCATCGCAT 138
* * * * * * * * * ** * * *
consensus_6168#2 TCAGCCATGCGGTTAGAAC-ACTGACCGCGACAGTGTATGT-GTGTGTGTTTGTGTGCGC 358
consensus_6168#3 TCAGCCATGCGGTTAGAAC-ACTGACCGCGACAGTGTATGT-GTGTGTGTTTGTGTGCGC 343
consensus_6168#1 CGCACGTTGCAGCGGAAGCGACCGTGTGCCGTCGCAACCGTCGTGTGTGTTTGTGTGCGC 192
consensus_6168#0 CGCTCGTTGCAGCGGAAGCGACCGTGTTCCGTCGCCGCCGT-GTGTGTGTGTGTGTGTTT 197
* *** * * * ** * * * ** ******** ******
consensus_6168#2 GAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTATCGC 418
consensus_6168#3 GAGTGTGCGTGTGTGTGTGTGT-----GTGTGACAAAAGCGCCACCGCCGCCGCCGCTGT 398
consensus_6168#1 GAGTGTGCGTGTGTGTGTGTGACAAAAGTGCCCCCCCGCCCCCTCCCCCTTCCCTCTCGT 252
consensus_6168#0 GTGTTCTTTAGCGCTTTAGCAGC----GTGTTGTGTT-TCCTCATGCCAGTGCGGCGCAT 252
* ** * * * * *** * * *
consensus_6168#2 CCCGCTACCGTGGCCTAAACCTCATCGCAAAACACCGACCGACCGCGGTC-GTGCCAGTT 477
consensus_6168#3 GTGGTTA--GTGAT---AGTGTGTGCGAGAATCAACCAACAATCACGTTCCGCGCACGTT 453
consensus_6168#1 CCCGCTACCGTGGCCTAAACCTCAGCGCAAAACACCGACCGACCGCGGTC-GTGCCAGTT 311
consensus_6168#0 CCAG-TAGCGGCGCAAAATCCACAGTTCCAAAAGGGGAATAGGGGGTGAAGCAAGCGAAG 311
* ** * * ** *
consensus_6168#2 GTGCGGGCTGTGTAGTGGACGGG---CACGACGACTGTC---TCTGTGCGGTACCGATAT 531
consensus_6168#3 CCACC--CTTCATCGCTCATCCC---CAGCCCATCGACG---GCCGTGCG---CTCGTCT 502
consensus_6168#1 GTGCGGGCTGTGTAGTGGACGGG---CACGACGACTGTC---TCTGTGCGGTACCGATAT 365
consensus_6168#0 GAGCGGGTAGTATGGCGACCGGGGCCCGCGGCGACCGGAAGATGCGGGTGGTGGCGCTGG 371
* * * * * * * * * *
consensus_6168#2 TT--TTGCAACAAAATCCGTGCGCGAGCGAGACGGCGAGCGA-GATCTCGAGTAGTGTGG 588
consensus_6168#3 CT--TCGTCGCGAG---CGAACCAGAAAGGGAGAACGTGTGAAGGTCGTCGGTGCCGTCG 557
consensus_6168#1 TT--TTGCAACAAAATCCGTGTGCGAGCGAGACGGCCAGCGA-GATCTCGAGTAGTGTGG 422
consensus_6168#0 TCAGCGGCGGCAAGGACAGCACGTACAACATGATGCAGGTGGTGGC--GGAGGGCCACGA 429
* * * * * * * * *
consensus_6168#2 GATGCTGTGGTGCGCGGATCGCCGCACGGAAGAA------GAAAGGGATACGATCGCGCT 642
consensus_6168#3 GTCAGCGTATTAGAGGGCCCCCGAC----------------------------------- 582
consensus_6168#1 GATGCTGTGGTGCGCGGATCGCCGCACGGAAGAA------GAAAGGGATACGATCGCGCT 476
consensus_6168#0 GCTGGTCGCGCTGGCCAACCTCCATCCGAAGGACCGGGACGAGCTGGACAGCTACATGTA 489
* * *
consensus_6168#2 CTAGACGCTGA-CAA--AAGAGTTTGCCCACGCACAACGG-------------------- 679
consensus_6168#3 ------------------------------------------------------------
consensus_6168#1 CTAGACGCTGA-CAA--AAGAGTTTGCCCACGCACAACGGACCGCGAGGGCGTAAA-ATA 532
consensus_6168#0 CCAGACGGTGGGCCACCAGGGGATCGAGAAGCTGGCCCAGGCGATGGAGCTGCCACTGTA 549
consensus_6168#2 ------------------------------------------------------------
consensus_6168#3 ------------------------------------------------------------
consensus_6168#1 GCAGCTCTTG-CGTCGGACCGCGCTCTGACCGCGACACGCC-CGGGGAGCAAAACTGGGC 590
consensus_6168#0 CCGGCGCATGACGCGCGGCCACTCGATCAACACCAAGGGCCACTACGAGCCGACCGAGGA 609
consensus_6168#2 ------------------------------------------------------------
consensus_6168#3 ------------------------------------------------------------
consensus_6168#1 GGAAGGGGTG-AGCCCAGAAAGTGGTCGCCGTCACAGTAGCTGCCGCCGCCGC-TGTGTG 648
consensus_6168#0 CGACGAGGTGGAGGATCTGTACGAGCTGCTGGCGGAGGTGCAGCGGGAGCAGCGCGTCGA 669
consensus_6168#2 ------------------------------------------------------------
consensus_6168#3 ------------------------------------------------------------
consensus_6168#1 GTTAGTGATAGTGTGTGCGAGAATCACCAACAATCACGTTCCGCGCACGT---------- 698
consensus_6168#0 GGCGGTGGCCGTCGGTGCCATCCTGTCCGACTATCAGCGCGTACGGGTGGAGAATGTCTG 729
consensus_6168#2 ------------------------------------------------------------
consensus_6168#3 ------------------------------------------------------------
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 CACCCGGCTGAACCTTATCTCGCTCGCGTACCTGTGGCGCCGGGACCAGACCGAGCTGCT 789
consensus_6168#2 ------------------------------------------------------------
consensus_6168#3 ------------------------------------------------------------
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 GCAGGAGATGATCGACTGTCAGGTGCACGCGATCATCATCAAGGTGGCGGCGCTCGGGCT 849
consensus_6168#2 ------------------------------------------------------------
consensus_6168#3 ------------------------------------------------------------
consensus_6168#1 ------------------------------------------------------------
consensus_6168#0 CATGCCGGACCGGCACCTGGGCAAATCGCTCAAGGAGCTGCAGCCGCACCTGCTGCTGAT 909
consensus_6168#2 -------
consensus_6168#3 -------
consensus_6168#1 -------
consensus_6168#0 GCGCGAC 916
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||