cluster # 6178

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Anopheles gambiae
cluster # 6178 cluster # 6178 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6178#0 length = 755 sequences # 1
consensus_6178#1 length = 646 sequences # 1

consensus_6178#2 length = 446 sequences # 2
consensus_6178#3 length = 427 sequences # 1

consensusID : consensus_6178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 755
fasta sequence

                              [GCAGAATCGGCACGTNGGCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGATGCTAAACAAGCTGCTGGACGAGAACGAATTCTTGGCCGTCTATTTCTTCGAGGAAGATCACGAGGAGAGCGAGGCCGTGCTGGAAAGGCTCGAGCTGATCGACAGCGAAACGGACAACCTGGACATCACCTTCGTCAAGATGGGCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTATTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCGATTTTTGCTACAGTGCTTCAAGCCTGCTCCGGCCGCACCGGTACCGGCATCCGGAAGGCAAAACTAATTGCTAAGCGGAAACCGGGNCCGGGCGCACTCTCGTCGTTTTAGGGGGTTACATTATTTGCGTTCCAGGTGGGTAAGGCCGGTTAGGANCAAGAACAGAGGCNATCNNCGAGANTTGNCAGGCACGGAAACGAAGTCAAAGGATGACAGGCTTACACGAANCGGCTAAGGTNNGATCCGGTGCATCGAATNAGAAGTGGTGGGACC]

[+] EMBL BX468336             [GCAGAATCGGCACGTNGGCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGATGCTAAACAAGCTGCTGGACGAGAACGAATTCTTGGCCGTCTATTTCTTCGAGGAAGATCACGAGGAGAGCGAGGCCGTGCTGGAAAGGCTCGAGCTGATCGACAGCGAAACGGACAACCTGGACATCACCTTCGTCAAGATGGGCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTATTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCGATTTTTGCTACAGTGCTTCAAGCCTGCTCCGGCCGCACCGGTACCGGCATCCGGAAGGCAAAACTAATTGCTAAGCGGAAACCGGGNCCGGGCGCACTCTCGTCGTTTTAGGGGGTTACATTATTTGCGTTCCAGGTGGGTAAGGCCGGTTAGGANCAAGAACAGAGGCNATCNNCGAGANTTGNCAGGCACGGAAACGAAGTCAAAGGATGACAGGCTTACACGAANCGGCTAAGGTNNGATCCGGTGCATCGAATNAGAAGTGGTGGGACC]




>consensus_6178#0
GCAGAATCGGCACGTNGGCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCA
TGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATC
GCAAGATGCTAAACAAGCTGCTGGACGAGAACGAATTCTTGGCCGTCTATTTCTTCGAGG
AAGATCACGAGGAGAGCGAGGCCGTGCTGGAAAGGCTCGAGCTGATCGACAGCGAAACGG
ACAACCTGGACATCACCTTCGTCAAGATGGGCGATCCGCGGTACGCGCGCAAGTGGGGCG
TCACCAAGCTGCCCGCGATCGTGTATTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCG
ACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGG
AGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTG
CGATTTTTGCTACAGTGCTTCAAGCCTGCTCCGGCCGCACCGGTACCGGCATCCGGAAGG
CAAAACTAATTGCTAAGCGGAAACCGGGNCCGGGCGCACTCTCGTCGTTTTAGGGGGTTA
CATTATTTGCGTTCCAGGTGGGTAAGGCCGGTTAGGANCAAGAACAGAGGCNATCNNCGA
GANTTGNCAGGCACGGAAACGAAGTCAAAGGATGACAGGCTTACACGAANCGGCTAAGGT
NNGATCCGGTGCATCGAATNAGAAGTGGTGGGACC

consensusID : consensus_6178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [GGCGAGGTGGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAAGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAGTGGCGGGGCGAAGAAGGGCGGCA]

[+] EMBL BX609127             [GGCGAGGTGGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAAGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAGTGGCGGGGCGAAGAAGGGCGGCA]




>consensus_6178#1
GGCGAGGTGGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACAC
AAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAAGCAGATCCCGATGCTG
TACGACGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTG
TTCGAGATCAAGAACGAAATCGAGGAGGTGAATCGCAAGTGGGGCGTCACCAAGCTGCCC
GCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGGGGCGACATGTACGACGAG
CAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTC
ATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAG
TGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCG
AACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAG
ACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGT
GCTCGATAGCGTGTGGACAAAAGTGGCGGGGCGAAGAAGGGCGGCA

consensusID : consensus_6178#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 446
fasta sequence

                              [GTGTATTCAGAAACGGTAACCCACTGATCTACGAGGGTGATCTTCAGAACGAGCAGTCCGTGCTGGAGTGGCTGGTGGACGATGACAACCGTGAGCTGGCGGACGAGATCGAGGAAGTTAACGAGCGTATGTGGATCGGTTGATGGAACAGTCGCCACTGCTGTGTGTGTTCTACTACGATGAAGACTGTGCCGAGTGTGACGACATCCTGGAGGAGCTGGAGCTGATCGACGGTGAGGTGGACCTGTAC-GGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACGACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAGAGCAGATCCCGATGCTGTACGATGGTGACATGCACGATCACGAGCGT-GTCATGAA-CTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGCAAAAATCCGCACGGC]

[+] EMBL CNS08JD1             [GTGTATTCAGAAACGGTAACCCACTGATCTACGAGGGTGATCTTCAGAACGAGCAGTCCGTGCTGGAGTGGCTGGTGGACGATGACAACCGTGAGCTGGCGGACGAGATCGAGGAAGTTAACGAGCGTATGTGGATCGGTTGATGGAACAGTCGCCACTGCTGTGTGTGTTCTACTACGATGAAGACTGTGCCGAGTGTGACGACATCCTGGAGGAGCTGGAGCTGATCGACGGTGAGGTGGACCTGTAC GGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACGACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAGAGCAGATCCCGATGCTGTACGATGGTGACATGCACGATCACGAGCGT GTCATGAA CTGGCTCACGTCGCAGGACGTGTT                              ]
[+] EMBL AL933523             [                                                                                                                                                                                                      TGACCACAT CTGTAGGAGCTGGAGCTGATCGACGGCGA GTGGACCTGTACGGGTATCGACTTTGTCAA GTGGCCAGCCTGGACGCGGCAC ACAAGTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCA AGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGGTCATGAACCTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGCAAAAATCCGCACGGC]




>consensus_6178#2
GTGTATTCAGAAACGGTAACCCACTGATCTACGAGGGTGATCTTCAGAACGAGCAGTCCG
TGCTGGAGTGGCTGGTGGACGATGACAACCGTGAGCTGGCGGACGAGATCGAGGAAGTTA
ACGAGCGTATGTGGATCGGTTGATGGAACAGTCGCCACTGCTGTGTGTGTTCTACTACGA
TGAAGACTGTGCCGAGTGTGACGACATCCTGGAGGAGCTGGAGCTGATCGACGGTGAGGT
GGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACGACAAGTATG
GCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAGAGCAGATCCCGATGCTGTACGAT
GGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAG
ATCAAGAACGCAAAAATCCGCACGGC

consensusID : consensus_6178#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [GCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGTGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAG]

[+] EMBL BX613217             [GCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCAAGCGCTTCCCCAGCATCTACCGTGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCACTCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAATGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGGACAAAAG]




>consensus_6178#3
GCGATCCGCGGTACGCGCGCAAGTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCC
GCAAGCGCTTCCCCAGCATCTACCGTGGCGACATGTACGACGAGCAGGACGTCCTCGAGT
GGCTGCGCAAGAACCGATTCCGCCAGCCGGAGCTGAACATCTTCATGTACGCACTGATCG
CGCTCGGACTCGGGTTCGTCATCTACACTGCATTTTTGCTACAGTGCTTCAAGCCTGCTC
CGCCCGCACCGGTACCGCATCCGAAGCAAAACTAATGCTAAGCGAACCGGCCGGGCGCAC
TCTCTCTTTAGGGTACATATTCTTCCAGTGTAAGCGTTAGACAGACAGAGAAAAAAAAAA
TGCAGCCGAACAATCAAGTGCAGCTACGATCGTTAGTTGATCGTGCTCGATAGCGTGTGG
ACAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6178#0      ------GCAGAATCGGCACGTNGGCGATGCTGTACGACGGTGACATGCACGATCACGAGC 54
consensus_6178#3      ------------------------------------------------------------
consensus_6178#1      ------------------------------------------------------------
consensus_6178#2      GTGTATTCAGAAACGGTAACCCACTGATC---TACGAGGGTGATCTTCAGAACGAGCAGT 57
                                                                                  

consensus_6178#0      GTGTCATGAACTGGCTCACGTCGCAGGACGTGTTCGAGATCAAGAACGAAATCGAGGAGG 114
consensus_6178#3      ------------------------------------------------------------
consensus_6178#1      -----------------GGCGAGGTGGACCTGTACGGTATCG---ACTTTGTCAAGGTGG 40
consensus_6178#2      CCGTGCTGGAGTGGCTGGTGGACGATGACAACCGTGAGCTGGCGGACGAGATCGAGGAAG 117
                                                                                  

consensus_6178#0      TGAATCGCAAGATGCTAAACAAGCTGCTGGACGAGAACGAATTCTTGGCCGTCTATTTCT 174
consensus_6178#3      ------------------------------------------------------------
consensus_6178#1      CCAGCCTGGACGCGGCACACAAG-TATGGCGTCACGACGATCCCGTCCCTGGTGTACTAC 99
consensus_6178#2      TTAACGAGCGTATG-TGGATCGGTTGATGGAACAGTCGCCACTGCTGTGTGTGTTCTACT 176
                                                                                  

consensus_6178#0      TCGAGGAAGATCACGAGGA-GAGCGAGGCCGTGCTGGAAAGGCTCGAGCTGATCGACAGC 233
consensus_6178#3      ------------------------------------------------------------
consensus_6178#1      CGCAAGCAGATCCCGATGCTGTACGACGGTGACATGCACGATCACGAGCGTGTCATGAAC 159
consensus_6178#2      ACGATGAAGACTGTGCCGA-GTGTGACGACATCCTGGAGGAGCTGGAGCTGATCGACGGT 235
                                                                                  

consensus_6178#0      GAAACGGACAACCTGGACATCACCTTCGTCAAGATGGGCGATCCGCGGTACGCG-CGCAA 292
consensus_6178#3      -------------------------------------GCGATCCGCGGTACGCG-CGCAA 22
consensus_6178#1      TGGCTCACGTCGCAGGACGTGTTCGAGATCAAGA-ACGAAATCGAGGAGGTGAATCGCAA 218
consensus_6178#2      GAGGTGGACCTGTACGGTATCGACTTTGTCAAGGTGGCCAGCCTGGACGCGGCACGACAA 295
                                                                *        *     ***

consensus_6178#0      GTGGGGCGTCACCAAGCTGCCCGCGATCGTGTATTTCCGCA-AGCGCTTCCCCAGCATCT 351
consensus_6178#3      GTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCA-AGCGCTTCCCCAGCATCT 81
consensus_6178#1      GTGGGGCGTCACCAAGCTGCCCGCGATCGTGTACTTCCGCA-AGCGCTTCCCCAGCATCT 277
consensus_6178#2      GTATGGCGTCACGACGATCCCGTCCCTGGTGTACTACCGCAGAGCAGATCCCGATGCTGT 355
                      **  ******** * * * **  *  * ***** * ***** ***   **** *   * *

consensus_6178#0      ACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCT-GCG-CAAGAACCGATT 409
consensus_6178#3      ACCGTGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCT-GCG-CAAGAACCGATT 139
consensus_6178#1      ACCGGGGCGACATGTACGACGAGCAGGACGTCCTCGAGTGGCT-GCG-CAAGAACCGATT 335
consensus_6178#2      ACGATGGTGACATGCACGATCACGAGCGTGTCATGAACTGGCTCACGTCGCAGGACGTGT 415
                      **   ** ****** ****  *  **   *** *  * *****  ** *      **  *

consensus_6178#0      CCGCCAGCCGGAGC-TGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCG 468
consensus_6178#3      CCGCCAGCCGGAGC-TGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCG 198
consensus_6178#1      CCGCCAGCCGGAGC-TGAACATCTTCATGTACGCACTGATCGCGCTCGGACTCGGGTTCG 394
consensus_6178#2      TCGAGATCAAGAACGCAAAAATCCGCACGGC----------------------------- 446
                       **  * *  ** *   ** ***  ** *                               

consensus_6178#0      TCATCTACACTGCGATTTTTGCTACAGTGCTTCAAGCCTGCTCCGGCCGCACCGGTACCG 528
consensus_6178#3      TCATCTACACTGC-ATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCG 257
consensus_6178#1      TCATCTACACTGC-ATTTTTGCTACAGTGCTTCAAGCCTGCTCCGCCCGCACCGGTACCG 453
consensus_6178#2      ------------------------------------------------------------
                                                                                  

consensus_6178#0      GCATCCGGAAGGCAAAACTAATTGCTAAGCGGAAACCGGGNCCGGGCGCACTCTCGTCGT 588
consensus_6178#3      -CATCCGAA--GCAAAACTAAT-GCTAAGCG--AACCG--GCCGGGCGCACTCTC----T 305
consensus_6178#1      -CATCCGAA--GCAAAACTAAT-GCTAAGCG--AACCG--GCCGGGCGCACTCTC----T 501
consensus_6178#2      ------------------------------------------------------------
                                                                                  

consensus_6178#0      TTTAGGGGGTTACATTATTTGCGTTCCAGGTGGGTAAGGCCGGTTAGGANCAAGAACAGA 648
consensus_6178#3      CTTTAGGGTACATATTCTTCCAGTGTAAGC---GTTAGACAGAC--AGAGAAAAAAAAAA 360
consensus_6178#1      CTTTAGGGTACATATTCTTCCAGTGTAAGC---GTTAGACAGAC--AGAGAAAAAAAAAA 556
consensus_6178#2      ------------------------------------------------------------
                                                                                  

consensus_6178#0      GGCNATCNNCGAGANTTGNCAGGCACGGAAACGAAGTCAAAGGATGACAGGCTTACACGA 708
consensus_6178#3      TGCAGCC-----GAACAATCAAGTGCAGCTACGA--TCGTTAGTTGATCG---TGCTCGA 410
consensus_6178#1      TGCAGCC-----GAACAATCAAGTGCAGCTACGA--TCGTTAGTTGATCG---TGCTCGA 606
consensus_6178#2      ------------------------------------------------------------
                                                                                  

consensus_6178#0      ANCGGCTAAGGTNNGATCCGGTGCATCGAATNAGAAGTGGTGGGACC 755
consensus_6178#3      TAGCGTGTGGACAAAAG------------------------------ 427
consensus_6178#1      TAGCGTGTGGACAAAAGT-GGCGGGGCGAAGAAGG-GCGGCA----- 646
consensus_6178#2      -----------------------------------------------