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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[CAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCACTGCTCGAGTTCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGAGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACATGGTGCGCCGGTTGCAGTCGGACTCGAGGATGATGCGCACGAAAGCGTTGGCATGTCTGCAAACGATGATGGAACTGAATCCCGATCTGGTCGAACAGTGGCTGTCCGAGACGCGCAGTCCGGCGCACCCGATTGAACGGAAAGTGTTTCTGCTGTTGAGCTGCTAGAAGCGTTGTTGCGGTGTACGGGCGACAGGAAAGCGGACATACTGAGCGCATTGCAGCTAGATCACCTGTGGTTGGTCGTGTTCGAGGCGTTGGTCAGCAGGGACGCCGTGTGCCGAATGGAAGCCGTAGCCATTCTCCGGCACGCCATCGGTTACGCGATGCACTGCGAAATGAGTTTTACCGGACAGTACTTTGCCTGGTGGCCAGAGTGGGAGAAATGCTGCGATGCGTGGCAATCGATTGTTGCCGTACTGGAGAGGCTGGACGAATTCAAA]
[+] EMBL CNS09GV6 [CAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCACTGCTCGAGTTCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGAGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACATGGTGCGCCGGTTGCAGTCGGACTCGAGGATGATGCGCACGAAAGCGTTGGCATGTCTGCAAACGATGATGGAACTGAATCCCGATCTGGTCGAACAGTGGCTGTCCGAGACGCGCAGTCCGGCGCACCCGATTGAACGGAAAGTGTTTCTGCTGTTGAGCTGCTAGAAGCGTTGTTGCGGTGTACGGGCGACAGGAAAGCGGACATACTGAGCGCATTGCAGCTAGATCACCTGTGGTTGGTCGTGTTCGAGGCGTTGGTCAGCAGGGACGCCGTGTGCCGAATGGAAGCCGTAGCCATTCTCCGGCACGCCATCGGTTACGCGATGCACTGCGAAATGAGTTTTACCGGACAGTACTTTGCCTGGTGGCCAGAGTGGGAGAAATGCTGCGATGCGTGGCAATCGATTGTTGCCGTACTGGAGAGGCTGGACGAATTCAAA]
consensusID : consensus_6180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[ATCGCCCTTGCATGGTCTGCGTAGTCGAAGCTTTGCAACCGCTCGTCTACAAATGCTTGCAATTCCTTCATCAGACTCATCATACCGCTCAAATTTGGCGGATAATCAAATTTCCTCTTGTCAACTGCTTCCTGCAG-AGCGATCAGCTGCTCACGCACAGCGAATGCTTGCTGCGGTATACGTTCGCCTGCTTCCTGCGCCTGTCTGATGCTATCCACCGCAGATTGAAAGTTATTGCAAATGTTATTAAATACGCTGTTAACTGATTCGGGCATATGTCCCAACAGCTTGCAACAAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGTTTTTAGCTCTTTGTGCCAGCACCTGCTCGATGAGAAAAGTGTCCGCAGGGCTGACCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTAGGCGGTCCAGGAACAAGCTGCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCATTTCCGCGACTACGGCCAGCAGAACGGCCGCATCGCGGGTCGGTTCGGCAACCTCATTGACAAAATCCAAAA]
[-] EMBL BM578497 [ATCGCCCTTGCATGGTCTGCGTAGTCGAAGCTTTGCAACCGCTCGTCTACAAATGCTTGCAATTCCTTCATCAGACTCATCATACCGCTCAAATTTGGCGGATAATCAAATTTCCTCTTGTCAACTGCTTCCTGCAG AGCGATCAGCTGCTCACGCACAGCGAATGCTTGCTGCGGTATACGTTCGCCTGCTTCCTGCGCCTGTCTGATGCTATCCACCGCAGATTGAAAGTTATTGCAAATGTTATTAAATACGCTGTTAACTGATTCGGGCATATGTCCCAACAGCTTGCAACAAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGTTTTTAGCTCTTTGTGCCAGCACCTGCTCGATGAGAAAAGTGTCCGCAGGGCTGACCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTAGGCGGTCCAGGAACAAGCTGCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCATTTCCGCGACTACGGCCAGCAGAACGGCCGCATCGCGG ]
[+] EMBL CNS09GV7 [ CTTGCATGGTCTGCGTA TCAAAGCTTTGCAACCGTTCATCTACGAATGCTTGCAATTCCTTCATCAGCCTCATCATACCGCTCAAATTTGGCCGATAATCAAATTTCCTCTTGTCAACTGCTTCCTGCAGCAGCGATCAGCTGCTCACGCACAGCGAATGCTTGCTGCGGTATACGTTCGCCTGCTTCCTGCGCCTGTCTGATGCTGTCCACCGCAGATTGAAAGTTTTTGCAAATGCTATCAAATACGCTGTTAACTAATTCGGGCATATGTCCCAACAGCTTGCAACAAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGTTTTTAGCTCTTTGTACCAGCACCTGCTCGATGAGAAAAGTGTCCGCA GGCTGACCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTAGGCGGTCCAGGAACAAGCTGCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCATTTCCGCGACTACGGCCAGCAGAACGGCCGCATCGGTCGTCGGTTCGGCAACCTCATTGACAAAATCCAAAA]
consensusID : consensus_6180#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 582 fasta sequence
[CTGCACCGACAGTCGTTCAAAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATGACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAGCTGATACAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACGACCGCCTGCAAGGGGATAGCGATTCACTCCGCTGGACTTTGAGCGCCCTAGCGCTGACGGCACTGCTCGAGTCCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGCGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACACTTTTCTCATCGAGCAGGTGCTGGGTACAAAGAGCTAAAAACAGCCT]
[+] EMBL BM598185 [CTGCACCGACAGTCGTTCAAAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATGACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAGCTGATACAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACGACCGCCTGCAAGGGGATAGCGATTCACTCCGCTGGACTTTGAGCGCCCTAGCGCTGACGGCACTGCTCGAGTCCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGTTCGAGCGGGAGCTGCACGCAACGCCGGTCTACTATGATGTGTTGCAAACGTTTCTCATCCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACACTTTTCTCATCGAGCAGGTGCTGGGTACAAAGAGCTAAAAACAGCCT]
[+] EMBL BM592591 [ ccgAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATGACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAGCTGATACAGCTCGCACAGAGCGAGCAAATCTTCCTGCAGAATGTGCACAATCTGCACAAACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCGCCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACGACCGCCTGCAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6180#0 ------------------------------------------------------------
consensus_6180#2 CTGCACCGACAGTCGTTCAAAGCAAAGCAACTACGTCGCATCGAATCTCACCCGAAAATG 60
consensus_6180#1 ------------------------------------------------------------
consensus_6180#0 ------------------------------------------------------------
consensus_6180#2 ACCTTCCAATCAAAATTTGTGCAAGATTTATGCACAACCGATACGGAAGCGCACGAGCAG 120
consensus_6180#1 -----------------------------------------------------------A 1
consensus_6180#0 ------CAGCTCGCACAGAGCGAGCAAATCTTC-CTGCAGAATGTGCACAA-TCTGCACA 52
consensus_6180#2 CTGATACAGCTCGCACAGAGCGAGCAAATCTTC-CTGCAGAATGTGCACAA-TCTGCACA 178
consensus_6180#1 TCGCCCTTGCATGGTCTGCGTAGTCGAAGCTTTGCAACCGCTCGTCTACAAATGCTTGCA 61
** * * * * * ** *** * * * ** **** * **
consensus_6180#0 AACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCG 112
consensus_6180#2 AACCATCGCTCGAAGCCCTGGTGTACGCGCTGCTGATGAAGCAGCGGGGAAAACTACCCG 238
consensus_6180#1 ATTCCTTCATCAGACTCATCATAC---CGCT-CAAATTTGGCGGATAATCAAATT-TCCT 116
* * * ** * * * * **** * ** ** * *** * **
consensus_6180#0 CCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCA------ 166
consensus_6180#2 CCTCGCTGCTGCATGGCGTTAACCTGCAAACTATCCTGTCGCTCGTGGACGGCAACCACG 298
consensus_6180#1 CTTGTCAACTGCTT--------CCTGCAGAGCGATCAGCTGCTCACGCACAGCGAATGCT 168
* * * **** * ****** * * * **** * ** **
consensus_6180#0 ------------------------------------------------------------
consensus_6180#2 ACCGCCTGCAAGGGGATAGCGATTCACTCCGCTGGACTTTGAGCGCCCTAGCGCTGACGG 358
consensus_6180#1 ---------------------------------------------------TGCTGCGGT 177
consensus_6180#0 --CTGCTCGAGTTCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGT 224
consensus_6180#2 CACTGCTCGAGTCCGATCTGCAGATCGTGATCCGGGAGCTGACAACGTTTGTGGATCGGT 418
consensus_6180#1 ATACGTTCGCCTGCTTCCTGC-GCCTGTCTGATGCTATCCACCGCAGATTGAAAGTTATT 236
* *** * * **** * ** * * * * * *** * *
consensus_6180#0 TCGAGAGGGAGCTGCACGCAACGCCGGTCTACTATG--ATGTGTTGCAAACGTTTCTCAT 282
consensus_6180#2 TCGAGCGGGAGCTGCACGCAACGCCGGTCTACTATG--ATGTGTTGCAAACGTTTCTCAT 476
consensus_6180#1 GCAAATGTTA-TTAAATACGCTGTTAACTGATTCGGGCATATGTCCCAACAGCTTGCAAC 295
* * * * * * * * * * * ** *** *** * ** *
consensus_6180#0 CCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACAT 342
consensus_6180#2 CCTAGCACAAGAGCTTCCCGAGCTGGTTGCCATCTGCAACCGAGCTAACGGTGCGGACAC 536
consensus_6180#1 AAACGGAAATATTCGATTCCAGCATATGGCTACTCAACTCAAGGCAAGCGTATAGGCTGT 355
* * * * * *** * ** * * ** * ** **
consensus_6180#0 GGTGCGCCGGTTGCAGTCGGACTCGAGGATGATGCGCACGAAAGCGTTGGCATGTCTGCA 402
consensus_6180#2 --TTTTCTCATCG-AGCAGGTGCTGGGTACAAAGAGCTAAAAACAGCCT----------- 582
consensus_6180#1 TTTTAGCTCTTTGTGCCAGCACCT--GCTCGATGAG---AAAAGTGTCCGCAGGGCTG-A 409
* * * * * * * * * *** *
consensus_6180#0 AACGATGATGGAACTGAATCCCGATCTGGTCGAACAGTGGCTGTCCGAGACGCGCAGTCC 462
consensus_6180#2 ------------------------------------------------------------
consensus_6180#1 CCCTTCCCCAGTGCGGCTCCAGGGCATCATTCGTTA--GGCGGTCCAGGA---ACAAGCT 464
consensus_6180#0 GGCGCACCCGATTGAACGGAAAGTGTTTCTGCTGTTGAGCTGCTAGAAGCGTTGTTGCGG 522
consensus_6180#2 ------------------------------------------------------------
consensus_6180#1 GCCATCCGGACTGCGAAAGTGTTCCTGGGTGATGGCGAACATTGGGGTAAGCTTCTGCAT 524
consensus_6180#0 TGTACGGGCGACAGGAAAGCGGACATACTGAGCGCATTGCAGCTAGATCACCTGTGGTTG 582
consensus_6180#2 ------------------------------------------------------------
consensus_6180#1 TTCCGCGACTACGGCCAGCAGAACGGCCGCATCGCGGGTCGGTTCGGCAACCT--CATTG 582
consensus_6180#0 GTCGTGTTCGAGGCGTTGGTCAGCAGGGACGCCGTGTGCCGAATGGAAGCCGTAGCCATT 642
consensus_6180#2 ------------------------------------------------------------
consensus_6180#1 ACAAAATCCAAAA----------------------------------------------- 595
consensus_6180#0 CTCCGGCACGCCATCGGTTACGCGATGCACTGCGAAATGAGTTTTACCGGACAGTACTTT 702
consensus_6180#2 ------------------------------------------------------------
consensus_6180#1 ------------------------------------------------------------
consensus_6180#0 GCCTGGTGGCCAGAGTGGGAGAAATGCTGCGATGCGTGGCAATCGATTGTTGCCGTACTG 762
consensus_6180#2 ------------------------------------------------------------
consensus_6180#1 ------------------------------------------------------------
consensus_6180#0 GAGAGGCTGGACGAATTCAAA 783
consensus_6180#2 ---------------------
consensus_6180#1 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||