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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1065 fasta sequence
[ATNGCCCCAGGATTTACAGCCGTTCGTGTGTGTGTCGTGTCGTGGAAGTTGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGCAATGATCATCGAACCCATATAGCAGAGCGTGGCTGGCACACAGTGAACAGTAGCAGCAAGCAGGCAGGGGTGTGTATGTTGGCCTTATTGATTNCTTCTAATCCATATTTGCTTTTAATTCCTTTAATCCATTGAATTACCCATCTTGGGTTTTNAAGCAATCTCAACGTGACACACCAGATTTGAAGCAATACGACTACGTANTTATGAGAGCGCTACTGGCGCCCGTGTGTNGTAGGGAAGCCGNCCCGCTATAAGCCTAANATTGACTACNTGTGGCCATNTTAGACGATTCGGGCATAGCCACNCATATTAACACGACAAACATTCCTCCGATAACCAGGCAAGACCCNGCGGCCCTACNACTNTTATNATCCCANTTCCANCAAGANCTTAGAACAACTTAGGAGAATCTTCCATTATAAGAGTAATNGTNNACGACACNANATATGNATCTTCGGCACNAACNNATGGTACAACTTCCGGCGGCCNACCAACTTGNCGAAANTCTTACGGGTANCAGTATNTTGGGCAAAAAANCANTTTGTNGGGCTTTTNCCCAACAAACCANCAGGTTGTNNAAAAAACGGGCCGACACAAGACAACANGAATTTGNCACAAGNGGGACCAAANAGGGGTCNCATCGGGAACGGTTGGTTTGTTANGACAGATAGCACTCGGTAGCGNNTANACGANNACGTCAGTACATAGCGCGCCACGAAGAGNGAGGGGTACCACGTTTCCAACCACCACAAACACTATTNGGAACCACNTATANTAGTAAACNGCNTCCCANACCATTTGGTAAACACTTTAACCGNTTGGTTAACAATCACTTACCACCATTTAACACAGCGNACTCTCCCAAGCGAATATTNACCANTANATAGANA]
[+] EMBL AL697510 [ATNGCCCCAGGATTTACAGCCGTTCGTGTGTGTGTCGTGTCGTGGAAGTTGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGCAATGATCATCGAACCCATATAGCAGAGCGTGGCTGGCACACAGTGAACAGTAGCAGCAAGCAGGCAGGGGTGTGTATGTTGGCCTTATTGATTNCTTCTAATCCATATTTGCTTTTAATTCCTTTAATCCATTGAATTACCCATCTTGGGTTTTNAAGCAATCTCAACGTGACACACCAGATTTGAAGCAATACGACTACGTANTTATGAGAGCGCTACTGGCGCCCGTGTGTNGTAGGGAAGCCGNCCCGCTATAAGCCTAANATTGACTACNTGTGGCCATNTTAGACGATTCGGGCATAGCCACNCATATTAACACGACAAACATTCCTCCGATAACCAGGCAAGACCCNGCGGCCCTACNACTNTTATNATCCCANTTCCANCAAGANCTTAGAACAACTTAGGAGAATCTTCCATTATAAGAGTAATNGTNNACGACACNANATATGNATCTTCGGCACNAACNNATGGTACAACTTCCGGCGGCCNACCAACTTGNCGAAANTCTTACGGGTANCAGTATNTTGGGCAAAAAANCANTTTGTNGGGCTTTTNCCCAACAAACCANCAGGTTGTNNAAAAAACGGGCCGACACAAGACAACANGAATTTGNCACAAGNGGGACCAAANAGGGGTCNCATCGGGAACGGTTGGTTTGTTANGACAGATAGCACTCGGTAGCGNNTANACGANNACGTCAGTACATAGCGCGCCACGAAGAGNGAGGGGTACCACGTTTCCAACCACCACAAACACTATTNGGAACCACNTATANTAGTAAACNGCNTCCCANACCATTTGGTAAACACTTTAACCGNTTGGTTAACAATCACTTACCACCATTTAACACAGCGNACTCTCCCAAGCGAATATTNACCANTANATAGANA]
consensusID : consensus_6187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 900 fasta sequence
[CCGGTGAAATCACAAGACACAAAAGAAACAACACACAGCCGTTCGTGTGTGTGTGTGTCCGTGGAAGTGGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGAATGATCATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAGAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGC-TTTTTTTTTCCTTTTTATCATGAATACCATCTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATGTTTTTTTTTTT-TATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGTTCGTTTGC-AAAACATTTGCTTTCCAAAACACGTTAAAACGCGAAAGAAGATGCAGGGCAAGGTTTGTGTGTGTGACGTTGCTGGGGTTAGGAGTTTTTTGGCGCGAAGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTACGTCCAAATTGTAATCTTACGTGTAAATCTTACACTCACGCTCTCCACGATTTTACGATTTAACGCTACGTGTTGTTGTTGGTATAGGTTGCAAAAACCAAACTCTGAGACGCCTTTTTTTGTAGGAAAAGCAAAACACGAACTCTCTCTCTCTTATTTTGCTATGAATATTGTTATCGTCGCCCTAAG]
[+] EMBL BM630908 [CCGGTGAAATCACAAGACACAAAAGAAACAACACACAGCCGTTCGTGTGTGTGTGTGTCCGTGGAAGTGGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGAATGATCATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAGAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGCTTTTTTTTTTCCTTTTTATCATGAATACCATCTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATG TTTTTTTTT TATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGTTCGTTTGC AAAACATTTGCTTTCCAAAACACGTTAAAACGCGAAAGAAGATGCAGGGCAAGGTTTGTGTGTGTGACGTTGCTGGGGTTAGGAGTTTTTTGGCGCGAAGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTACGTCCAAATTGT ]
[+] EMBL BM592819 [ ccgCGATTGCTATCAAAAGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGGAAAGCTTGTCGCGCCAAATCCCATTGTCAGTGAATGATCATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAAAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGC TTTTTTTTTCCTTTTTATCATGAATACCATTTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGGTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCgc ]
[+] EMBL BX619126 [ CATCGAACCATATAGAGAGCGTGGCGGAAAGGAACAGTAGAGCAAGAGGAGGGGTGTGTTGTGGCTTTTGATTTTCTAATCATTTTGC TTTTTTTTTCCTTTTTATCATGAATACCATCTGGTTTAAGAATCTCAACGTGACACACAGATTGAGCAATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATGTTTTTTTTTTT TATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGNNCGTTTGCAAAAACATTTGCTTTtccc ]
[+] EMBL BX602539 [ AATCGCTCGTATTTGAGGCCTCTGCCCCGTGTGTGTGGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACACATATACAGAAAATCGCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAAACTGAATCTCATTAATATGTTTTTTTTTTTAAATTTCGAAACACGAACTCCGCGCACAATGAAAATCTCGTTCGTTTGC AAAACATTTGCTTTCCAAAACACGTTAAAACGCGAAAGAAGATGCAGGGCAAGGTGTGTGTGTGTGACGTTGCT GTGTTAGGAGTTTTT GCGCG AGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTACGTCCAAATTGTAATCTTACGTGTAAATCTTACACTCACGCTCTCCACGATTTTACGATTTAACGCTACGTGTTGTTGTTGGTATAGGTTGCAAAAACCAAACTCTGAGACGCCTTTTTTTGTAGGAAAAGCAAAACACGAACTCTCTCTCTCTTATTTTGCTATGAATATTGTTATCGTCGCCCTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6187#0 ------------------ATNGCCCCAG-GATTTACAGCCGTTCGTGTGTGTGTCGTGTC 41
consensus_6187#1 CCGGTGAAATCACAAGACACAAAAGAAACAACACACAGCCGTTCGTGTGTGTGTGTGTCC 60
* * * ******************** *
consensus_6187#0 GTGGAAGTTGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAA 101
consensus_6187#1 GTGGAAGTGGTTAGAGAAAAGCGCTTTTCAAACAGAAAGCTGTTGACGATTGCTAACAAA 120
******** ***************************************************
consensus_6187#0 AGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCC 161
consensus_6187#1 AGTATTAAACAACGTAGCGGCGGGAGAAGGATACGGGAAAAGCTTGTCGCGCCAAATCCC 180
************************************************************
consensus_6187#0 ATTGTCAGTGCAATGATCATCGAACCCATATAGCAGAGCGTGGCTGGCACACAGTGAACA 221
consensus_6187#1 ATTGTCAGTG-AATGATCATCGAACC-ATATAG-AGAGCGTGGCGGA-----AAGGAACA 232
********** *************** ****** ********** * * *****
consensus_6187#0 GTAGCAGCAAGCAGGCAGGGGTGTGTATGTTGGCCTTATTGATTNCTTCTAATCCATATT 281
consensus_6187#1 GTAG-----AGCAAGAGGAGGGGTGTGTTGTGGCTT--TTGATTT--TCTAATC-AT-TT 281
**** **** * * ** **** * **** * ****** ******* ** **
consensus_6187#0 TGCTTTTAATTCCTTTAATCCATTGAATTACCCATCTTGGGTTTTNAAGCAATCTCAACG 341
consensus_6187#1 TGCTTTTTTTTTCCTTTTTATCATGAAT--ACCATCTGG----TTTAAG-AATCTCAACG 334
******* ** * ** * ***** ****** * ** *** **********
consensus_6187#0 TGACACACCAGATTTGAAGCAATACGACTACGTANTTATGAGAGCGCTACTGGCGCCCGT 401
consensus_6187#1 TGACACAC-AGATT--GAGCAATC--GCT-CGTATT--TGAGGCCTCTGC-----CCCGT 381
******** ***** ****** ** **** * **** * ** * *****
consensus_6187#0 GTGTNGTAGGGAAGCCGNCCCGCTATAAGCCTAANATTGACTACNTGTGGCCATNT-TAG 460
consensus_6187#1 GTGTGT---GGGAGCCGCCCCGTTAGCCTAATGACTCTGTGCATTAGCGATCGCATACAC 438
**** ** ***** **** ** * * ** * * * * * *
consensus_6187#0 ACGATTCGGGCATAGCCACNCATATTAACACGACAAACATTCCTCCGATAACCAGGCAAG 520
consensus_6187#1 ATATACAGAAAATCTCGATACAGAAAACCGCGCCTCACTTTTTTTCATCAAAGACTAGAA 498
* * ** * * ** * * * ** * ** ** * * ** * *
consensus_6187#0 ACCCNGCGGCCCTACNACTNTTATNATCCCANTTCC--ANCAAGANCTTAGAACAACTTA 578
consensus_6187#1 ACTGAATCTCATTAATATGTTTTTTTTTTTTATTTCGAAACACGAACTCCGCGCACAATG 558
** * ** * ** * * ** * * ** ** ** * ** *
consensus_6187#0 GGAGAATCTTCCATTATAAGAGTAATNGTNNACGACACNANATATGNATCTTCGGCACNA 638
consensus_6187#1 AAAATCTCGTTCGTTTGCAAAACATTTGCTTTC--CAAAACACGTTAAAACGCGAAA-GA 615
* ** * * ** * * * * * * ** * * * * ** * *
consensus_6187#0 ACNNATGGTACAACTTCCGGCGGCCNACCAACTTGNCGAAANTCTTACGGGTANCAGTAT 698
consensus_6187#1 AGATGCAGGGCAA--------GGTTTGTGTGTGTGACG---TTGCTGGGGTTAGGAGTTT 664
* * *** ** ** ** * * ** ** *** *
consensus_6187#0 NTTGGGCAAAAAANCANTTTGTNGGGCTTTTNCCCAACAAACCANCAGGTTGTNNAAAAA 758
consensus_6187#1 TTTGGCGCGAAGGGGGTTCAGTTCAACACAATCTTGAAACTTTGTTA---CGTCCAAATT 721
**** ** * ** * * * * * ** ***
consensus_6187#0 ACGGGCCGACACAAGACAACANGAATTTGNCACAAGNGGGACCAAANAGGGGTCNCATCG 818
consensus_6187#1 GTAATCTTACGTG--------TAAATCTTACACTCACG---------------CTCTCCA 758
* ** *** * *** * * * *
consensus_6187#0 GGAACGGTTGGTTTGTTANGACAGATAGCACTCGGTAGCGNNTANACGANNACGTCAGTA 878
consensus_6187#1 CGATTTTACGATTTAACGCTACGTGTTGTTGTTGGTATAGGTTGCA--AAAACCAAACTC 816
** * *** ** * * * **** * * * * ** * *
consensus_6187#0 CATAGCGCGCCACGAAGAGNGAGGGGTACCACGTTTCCAACCACCACAAACACTATTNGG 938
consensus_6187#1 TGAGACGCCTTTTTTTGTAGGAAAAGCAAAACA---CGAACTCTCTCTCTC-TTATTTTG 872
*** * ** * * ** * *** * * * **** *
consensus_6187#0 AACCACNTATANTAGTAAACNGCNTCCCANACCATTTGGTAAACACTTTAACCGNTTGGT 998
consensus_6187#1 --CTATGAATATT-GTTATCGTCGCCCTAAG----------------------------- 900
* * *** * ** * * * ** *
consensus_6187#0 TAACAATCACTTACCACCATTTAACACAGCGNACTCTCCCAAGCGAATATTNACCANTAN 1058
consensus_6187#1 ------------------------------------------------------------
consensus_6187#0 ATAGANA 1065
consensus_6187#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||