These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 831 fasta sequence [TTTTTTTTAAAGTTTTTAACTGAATTTCACTTTTTGAATAGTTTATTTTCAATTTATTACAATAAGTCCTATTTATTATGTACATATTTACCGTACTAAACGCTTCTCTCTTGCTCTCCTGCTCTCTTTCTCTTGGTACAGATGCACTAGCTGCAATACATATAGGAGAAGAATCGAGTTCCCTTCCGTTCTCGCAAAACGGACTGTCACTCCATTCTTCCCACAAAACTGGCTCACTTCTTGGTTTTCCTTCCTTTCATTTTTTTTTCTTTCTTCCGTAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATTGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTT-CCCCCTTCCCTGCAGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCGTGTTATCACTGTTGCTCNTACCTACCGTGCCCAAACGCACCGTCCCGNTACACAGCAGCCTCACAGTAACCTGACCGTGTTGAGA] [+] EMBL AGA283555 [TTTTTTTTAAAGTTTTTAACTGAATTTCACTTTTTGAATAGTTTATTTTCAATTTATTACAATAAGTCCTATTTATTATGTACATATTTACCGTACTAAACGCTTCTCTCTTGCTCTCCTGCTCTCTTTCTCTTGGTACAGATGCACTAGCTGCAATACATATAGGAGAAGAATCGAGTTCCCTTCCGTTCTCGCAAAACGGACTGTCACTCCATTCTTCCCACAAAACTGGCTCACTTCTTGGTTTTCCTTCCTTTCATTTTTTTTTCTTTCTTCCGTAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATTGTTCTCTCCGAAAACGCAATCCGT ] [+] EMBL AGA281801 [ ACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTTCCCCCCTTCCCTGCAACACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATAC ] [-] EMBL AGA284846 [ TCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTT CCCCCTTCCCTGCAGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGC ] [-] EMBL AGA280103 [ TGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTT CCCCCTTCCCTGCAGCACAAAACTGGTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCGTGTTATCACTGTTGCTCNTACCTACCGTGCCCAAACGCACCGTCCCGNTACACAGCAGCCTCACAGTAACCTGACCGTGTTGAGA] consensusID : consensus_6188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [AATCGCCCGAGGTAAGATATAGACGCACTAAATTGAAGAGAAGTAAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCCTGTTATCACTGTTGCTCCTACCTACCGTGCCCAAACGCACCGTCCCGCTACACAGCAGCCTCACAGTAACCTGACCGTGTTGA] [+] EMBL AL933438 [AATCGCCCGAGGTAAGATATAGACGCACTAAATTGAAGAGAAGTAAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCCTGTTATCACTGTTGCTCCTACCTACCGTGCCCAAACGCACCGTCCCGCTACACAGCAGCCTCACAGTAACCTGACCGTGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6188#0 TTTTTTTTAAAGTTTTTAACTGAATTTCACTTTTTGAATAGTTTATTTTCAATTTATTAC 60 consensus_6188#1 ------------------------------------------------------------ consensus_6188#0 AATAAGTCCTATTTATTATGTACATATTTACCGTACTAAACGCTTCTCTCTTGCTCTCCT 120 consensus_6188#1 ------------------------------------------------------------ consensus_6188#0 GCTCTCTTTCTCTTGGTACAGATGCACTAGCTGCAATACATATAGGAGAAGAATCGAGTT 180 consensus_6188#1 ------------------------------------------------------------ consensus_6188#0 CCCTTCCGTTCTCGCAAAACGGACTGTCACTCCATTCTTCCCACAAAACTGGCTCACTTC 240 consensus_6188#1 ------------------------------------------------------AATCGC 6 * * consensus_6188#0 TTGGTTTTCCTTCCTTTCATTTTTTTTTCTTTCTTCCGTAGTGTTTGACAATTTACATAT 300 consensus_6188#1 CCGAGGTAAGATATAGACGCACTAAATTGAAGAGAAGTAAGTGTTTGACAATTTACATAT 66 * * * * * ** ********************* consensus_6188#0 CCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCG 360 consensus_6188#1 CCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCG 126 ************************************************************ consensus_6188#0 CTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACT 420 consensus_6188#1 CTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACT 186 ************************************************************ consensus_6188#0 TGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATTGTTCTCTCCGAAAACGCAA 480 consensus_6188#1 TGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAA 246 **************************************** ******************* consensus_6188#0 TCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGA 540 consensus_6188#1 TCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGA 306 ************************************************************ consensus_6188#0 CACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCA 600 consensus_6188#1 CACG-------------------------------------------------------- 310 **** consensus_6188#0 CCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTTCCCCCTTCCCTGC 660 consensus_6188#1 ------------------------------------------------------------ consensus_6188#0 AGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGT 720 consensus_6188#1 --CACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGT 368 ********************************************************** consensus_6188#0 GGCAGCTGCTGCTCGCTGGATTCGCGTGTTATCACTGTTGCTCNTACCTACCGTGCCCAA 780 consensus_6188#1 GGCAGCTGCTGCTCGCTGGATTCGCCTGTTATCACTGTTGCTCCTACCTACCGTGCCCAA 428 ************************* ***************** **************** consensus_6188#0 ACGCACCGTCCCGNTACACAGCAGCCTCACAGTAACCTGACCGTGTTGAGA 831 consensus_6188#1 ACGCACCGTCCCGCTACACAGCAGCCTCACAGTAACCTGACCGTGTTGA-- 477 ************* *********************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||