cluster # 6188

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 6188 cluster # 6188 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6188#0 length = 831 sequences # 4

consensus_6188#1 length = 477 sequences # 1

consensusID : consensus_6188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 831
fasta sequence

                              [TTTTTTTTAAAGTTTTTAACTGAATTTCACTTTTTGAATAGTTTATTTTCAATTTATTACAATAAGTCCTATTTATTATGTACATATTTACCGTACTAAACGCTTCTCTCTTGCTCTCCTGCTCTCTTTCTCTTGGTACAGATGCACTAGCTGCAATACATATAGGAGAAGAATCGAGTTCCCTTCCGTTCTCGCAAAACGGACTGTCACTCCATTCTTCCCACAAAACTGGCTCACTTCTTGGTTTTCCTTCCTTTCATTTTTTTTTCTTTCTTCCGTAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATTGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTT-CCCCCTTCCCTGCAGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCGTGTTATCACTGTTGCTCNTACCTACCGTGCCCAAACGCACCGTCCCGNTACACAGCAGCCTCACAGTAACCTGACCGTGTTGAGA]

[+] EMBL AGA283555            [TTTTTTTTAAAGTTTTTAACTGAATTTCACTTTTTGAATAGTTTATTTTCAATTTATTACAATAAGTCCTATTTATTATGTACATATTTACCGTACTAAACGCTTCTCTCTTGCTCTCCTGCTCTCTTTCTCTTGGTACAGATGCACTAGCTGCAATACATATAGGAGAAGAATCGAGTTCCCTTCCGTTCTCGCAAAACGGACTGTCACTCCATTCTTCCCACAAAACTGGCTCACTTCTTGGTTTTCCTTCCTTTCATTTTTTTTTCTTTCTTCCGTAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATTGTTCTCTCCGAAAACGCAATCCGT                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AGA281801            [                                                                                                                                                                                                                                                                                                                                                                               ACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTTCCCCCCTTCCCTGCAACACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATAC                                                                                                                        ]
[-] EMBL AGA284846            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTT CCCCCTTCCCTGCAGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGC                                                                                               ]
[-] EMBL AGA280103            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGCACCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTT CCCCCTTCCCTGCAGCACAAAACTGGTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCGTGTTATCACTGTTGCTCNTACCTACCGTGCCCAAACGCACCGTCCCGNTACACAGCAGCCTCACAGTAACCTGACCGTGTTGAGA]




>consensus_6188#0
TTTTTTTTAAAGTTTTTAACTGAATTTCACTTTTTGAATAGTTTATTTTCAATTTATTAC
AATAAGTCCTATTTATTATGTACATATTTACCGTACTAAACGCTTCTCTCTTGCTCTCCT
GCTCTCTTTCTCTTGGTACAGATGCACTAGCTGCAATACATATAGGAGAAGAATCGAGTT
CCCTTCCGTTCTCGCAAAACGGACTGTCACTCCATTCTTCCCACAAAACTGGCTCACTTC
TTGGTTTTCCTTCCTTTCATTTTTTTTTCTTTCTTCCGTAGTGTTTGACAATTTACATAT
CCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCG
CTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACT
TGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATTGTTCTCTCCGAAAACGCAA
TCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGA
CACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCA
CCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTTCCCCCTTCCCTGC
AGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGT
GGCAGCTGCTGCTCGCTGGATTCGCGTGTTATCACTGTTGCTCNTACCTACCGTGCCCAA
ACGCACCGTCCCGNTACACAGCAGCCTCACAGTAACCTGACCGTGTTGAGA

consensusID : consensus_6188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [AATCGCCCGAGGTAAGATATAGACGCACTAAATTGAAGAGAAGTAAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCCTGTTATCACTGTTGCTCCTACCTACCGTGCCCAAACGCACCGTCCCGCTACACAGCAGCCTCACAGTAACCTGACCGTGTTGA]

[+] EMBL AL933438             [AATCGCCCGAGGTAAGATATAGACGCACTAAATTGAAGAGAAGTAAGTGTTTGACAATTTACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGACACGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCCTGTTATCACTGTTGCTCCTACCTACCGTGCCCAAACGCACCGTCCCGCTACACAGCAGCCTCACAGTAACCTGACCGTGTTGA]




>consensus_6188#1
AATCGCCCGAGGTAAGATATAGACGCACTAAATTGAAGAGAAGTAAGTGTTTGACAATTT
ACATATCCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCG
TGCGCGCTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAG
TGAACTTGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAA
ACGCAATCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAG
CAGCGACACGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACG
CCCGGTGTGGCAGCTGCTGCTCGCTGGATTCGCCTGTTATCACTGTTGCTCCTACCTACC
GTGCCCAAACGCACCGTCCCGCTACACAGCAGCCTCACAGTAACCTGACCGTGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6188#0      TTTTTTTTAAAGTTTTTAACTGAATTTCACTTTTTGAATAGTTTATTTTCAATTTATTAC 60
consensus_6188#1      ------------------------------------------------------------
                                                                                  

consensus_6188#0      AATAAGTCCTATTTATTATGTACATATTTACCGTACTAAACGCTTCTCTCTTGCTCTCCT 120
consensus_6188#1      ------------------------------------------------------------
                                                                                  

consensus_6188#0      GCTCTCTTTCTCTTGGTACAGATGCACTAGCTGCAATACATATAGGAGAAGAATCGAGTT 180
consensus_6188#1      ------------------------------------------------------------
                                                                                  

consensus_6188#0      CCCTTCCGTTCTCGCAAAACGGACTGTCACTCCATTCTTCCCACAAAACTGGCTCACTTC 240
consensus_6188#1      ------------------------------------------------------AATCGC 6
                                                                             *   *

consensus_6188#0      TTGGTTTTCCTTCCTTTCATTTTTTTTTCTTTCTTCCGTAGTGTTTGACAATTTACATAT 300
consensus_6188#1      CCGAGGTAAGATATAGACGCACTAAATTGAAGAGAAGTAAGTGTTTGACAATTTACATAT 66
                        *   *    *     *    *   **           *********************

consensus_6188#0      CCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCG 360
consensus_6188#1      CCCTGAATTAAATACGTACTACTCAACGTTTCCCCATAATGCTTCCACCTCCCGTGCGCG 126
                      ************************************************************

consensus_6188#0      CTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACT 420
consensus_6188#1      CTCCGGCACACAACCCCGTTTGGGCCCCGATTTGTGGGCACCTAAAATGACTAGTGAACT 186
                      ************************************************************

consensus_6188#0      TGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATTGTTCTCTCCGAAAACGCAA 480
consensus_6188#1      TGTGTGTTTAACCCCCTTGTTTTGGTCCTTCGAGCCGGATCGTTCTCTCCGAAAACGCAA 246
                      **************************************** *******************

consensus_6188#0      TCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGA 540
consensus_6188#1      TCCGTTGGCATCGCAGCGACACTCAAAGCGGGCGGGTTGTGCGTGAGCCCGGAGCAGCGA 306
                      ************************************************************

consensus_6188#0      CACGGTAAGAAGAAAAGAGCACCTACCTACACAGCTACTATCAGACTAAAACGCTCTGCA 600
consensus_6188#1      CACG-------------------------------------------------------- 310
                      ****                                                        

consensus_6188#0      CCTTACCGTACTATATATACACCGCTTCTTTTAAAATTCCCCCTTTTCCCCCTTCCCTGC 660
consensus_6188#1      ------------------------------------------------------------
                                                                                  

consensus_6188#0      AGCACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGT 720
consensus_6188#1      --CACAAAACTGCTAGTCAAAAACCCAGTCTTAGTATCACGTGCGCCATACGCCCGGTGT 368
                        **********************************************************

consensus_6188#0      GGCAGCTGCTGCTCGCTGGATTCGCGTGTTATCACTGTTGCTCNTACCTACCGTGCCCAA 780
consensus_6188#1      GGCAGCTGCTGCTCGCTGGATTCGCCTGTTATCACTGTTGCTCCTACCTACCGTGCCCAA 428
                      ************************* ***************** ****************

consensus_6188#0      ACGCACCGTCCCGNTACACAGCAGCCTCACAGTAACCTGACCGTGTTGAGA 831
consensus_6188#1      ACGCACCGTCCCGCTACACAGCAGCCTCACAGTAACCTGACCGTGTTGA-- 477
                      ************* ***********************************